Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1394

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1391 and B158DRAFT_1392 are separated by 9 nucleotidesB158DRAFT_1392 and B158DRAFT_1393 are separated by 5 nucleotidesB158DRAFT_1393 and B158DRAFT_1394 are separated by 137 nucleotidesB158DRAFT_1394 and B158DRAFT_1395 are separated by 20 nucleotidesB158DRAFT_1395 and B158DRAFT_1396 are separated by 208 nucleotides B158DRAFT_1391: B158DRAFT_1391 - sulfur relay protein TusB/DsrH, at 1,435,837 to 1,436,109 _1391 B158DRAFT_1392: B158DRAFT_1392 - sulfur relay protein TusC/DsrF, at 1,436,119 to 1,436,484 _1392 B158DRAFT_1393: B158DRAFT_1393 - sulfur relay protein TusD/DsrE, at 1,436,490 to 1,436,882 _1393 B158DRAFT_1394: B158DRAFT_1394 - Peptidase family M49., at 1,437,020 to 1,438,753 _1394 B158DRAFT_1395: B158DRAFT_1395 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 1,438,774 to 1,439,505 _1395 B158DRAFT_1396: B158DRAFT_1396 - hypothetical protein, at 1,439,714 to 1,440,946 _1396 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1 2at 1436.117 kb on - strandat 1436.915 kb on - strandat 1436.915 kb on - strandat 1436.915 kb on - strandat 1436.915 kb on - strandat 1436.915 kb on - strandat 1436.930 kb on - strandat 1436.947 kb on - strandat 1437.006 kb on + strandat 1437.022 kb on + strandat 1437.047 kb on - strandat 1437.047 kb on - strandat 1437.235 kb on + strand, within B158DRAFT_1394at 1437.236 kb on - strand, within B158DRAFT_1394at 1437.345 kb on + strand, within B158DRAFT_1394at 1437.345 kb on + strand, within B158DRAFT_1394at 1437.345 kb on + strand, within B158DRAFT_1394at 1437.348 kb on - strand, within B158DRAFT_1394at 1437.353 kb on - strand, within B158DRAFT_1394at 1437.353 kb on - strand, within B158DRAFT_1394at 1437.358 kb on - strand, within B158DRAFT_1394at 1437.383 kb on - strand, within B158DRAFT_1394at 1437.442 kb on - strand, within B158DRAFT_1394at 1437.461 kb on - strand, within B158DRAFT_1394at 1437.559 kb on + strand, within B158DRAFT_1394at 1437.601 kb on - strand, within B158DRAFT_1394at 1437.693 kb on + strand, within B158DRAFT_1394at 1437.727 kb on + strand, within B158DRAFT_1394at 1437.741 kb on + strand, within B158DRAFT_1394at 1437.763 kb on + strand, within B158DRAFT_1394at 1437.766 kb on - strand, within B158DRAFT_1394at 1437.766 kb on - strand, within B158DRAFT_1394at 1437.768 kb on + strand, within B158DRAFT_1394at 1437.810 kb on - strand, within B158DRAFT_1394at 1437.827 kb on + strand, within B158DRAFT_1394at 1437.835 kb on - strand, within B158DRAFT_1394at 1437.850 kb on - strand, within B158DRAFT_1394at 1437.961 kb on - strand, within B158DRAFT_1394at 1438.017 kb on + strand, within B158DRAFT_1394at 1438.022 kb on + strand, within B158DRAFT_1394at 1438.030 kb on - strand, within B158DRAFT_1394at 1438.035 kb on - strand, within B158DRAFT_1394at 1438.080 kb on - strand, within B158DRAFT_1394at 1438.084 kb on + strand, within B158DRAFT_1394at 1438.092 kb on - strand, within B158DRAFT_1394at 1438.092 kb on - strand, within B158DRAFT_1394at 1438.108 kb on + strand, within B158DRAFT_1394at 1438.182 kb on - strand, within B158DRAFT_1394at 1438.248 kb on + strand, within B158DRAFT_1394at 1438.264 kb on - strand, within B158DRAFT_1394at 1438.266 kb on - strand, within B158DRAFT_1394at 1438.266 kb on - strand, within B158DRAFT_1394at 1438.301 kb on - strand, within B158DRAFT_1394at 1438.301 kb on - strand, within B158DRAFT_1394at 1438.353 kb on + strand, within B158DRAFT_1394at 1438.424 kb on + strand, within B158DRAFT_1394at 1438.425 kb on + strand, within B158DRAFT_1394at 1438.480 kb on - strand, within B158DRAFT_1394at 1438.485 kb on - strand, within B158DRAFT_1394at 1438.540 kb on - strand, within B158DRAFT_1394at 1438.572 kb on - strand, within B158DRAFT_1394at 1438.572 kb on - strand, within B158DRAFT_1394at 1438.613 kb on - strandat 1438.743 kb on + strandat 1438.810 kb on - strandat 1438.812 kb on + strandat 1438.812 kb on + strandat 1438.820 kb on - strandat 1438.918 kb on + strand, within B158DRAFT_1395at 1439.036 kb on - strand, within B158DRAFT_1395at 1439.036 kb on - strand, within B158DRAFT_1395at 1439.056 kb on - strand, within B158DRAFT_1395at 1439.068 kb on - strand, within B158DRAFT_1395at 1439.127 kb on + strand, within B158DRAFT_1395at 1439.142 kb on - strand, within B158DRAFT_1395at 1439.144 kb on + strand, within B158DRAFT_1395at 1439.183 kb on + strand, within B158DRAFT_1395at 1439.184 kb on + strand, within B158DRAFT_1395at 1439.191 kb on - strand, within B158DRAFT_1395at 1439.191 kb on - strand, within B158DRAFT_1395at 1439.191 kb on - strand, within B158DRAFT_1395at 1439.263 kb on + strand, within B158DRAFT_1395at 1439.353 kb on + strand, within B158DRAFT_1395at 1439.410 kb on + strand, within B158DRAFT_1395at 1439.412 kb on + strand, within B158DRAFT_1395at 1439.420 kb on - strand, within B158DRAFT_1395at 1439.420 kb on - strand, within B158DRAFT_1395at 1439.438 kb on + strandat 1439.534 kb on + strandat 1439.542 kb on - strandat 1439.565 kb on + strandat 1439.611 kb on - strandat 1439.661 kb on - strandat 1439.738 kb on - strandat 1439.745 kb on + strandat 1439.753 kb on - strandat 1439.753 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
remove
1,436,117 - -0.1
1,436,915 - -1.3
1,436,915 - -1.1
1,436,915 - -0.4
1,436,915 - -1.6
1,436,915 - -2.4
1,436,930 - -1.0
1,436,947 - -0.2
1,437,006 + -0.2
1,437,022 + +0.1
1,437,047 - -0.4
1,437,047 - -0.2
1,437,235 + B158DRAFT_1394 0.12 -0.9
1,437,236 - B158DRAFT_1394 0.12 +0.2
1,437,345 + B158DRAFT_1394 0.19 -0.1
1,437,345 + B158DRAFT_1394 0.19 -0.4
1,437,345 + B158DRAFT_1394 0.19 +0.1
1,437,348 - B158DRAFT_1394 0.19 -0.2
1,437,353 - B158DRAFT_1394 0.19 -0.4
1,437,353 - B158DRAFT_1394 0.19 -0.8
1,437,358 - B158DRAFT_1394 0.19 +0.3
1,437,383 - B158DRAFT_1394 0.21 -0.4
1,437,442 - B158DRAFT_1394 0.24 -1.1
1,437,461 - B158DRAFT_1394 0.25 -1.0
1,437,559 + B158DRAFT_1394 0.31 -0.7
1,437,601 - B158DRAFT_1394 0.34 -0.5
1,437,693 + B158DRAFT_1394 0.39 +0.1
1,437,727 + B158DRAFT_1394 0.41 +0.5
1,437,741 + B158DRAFT_1394 0.42 +0.2
1,437,763 + B158DRAFT_1394 0.43 -0.4
1,437,766 - B158DRAFT_1394 0.43 -1.4
1,437,766 - B158DRAFT_1394 0.43 +0.1
1,437,768 + B158DRAFT_1394 0.43 -0.5
1,437,810 - B158DRAFT_1394 0.46 +0.1
1,437,827 + B158DRAFT_1394 0.47 +1.1
1,437,835 - B158DRAFT_1394 0.47 -0.1
1,437,850 - B158DRAFT_1394 0.48 -0.0
1,437,961 - B158DRAFT_1394 0.54 +0.5
1,438,017 + B158DRAFT_1394 0.57 -0.8
1,438,022 + B158DRAFT_1394 0.58 +0.3
1,438,030 - B158DRAFT_1394 0.58 -0.4
1,438,035 - B158DRAFT_1394 0.59 -0.4
1,438,080 - B158DRAFT_1394 0.61 +0.4
1,438,084 + B158DRAFT_1394 0.61 -0.3
1,438,092 - B158DRAFT_1394 0.62 -0.2
1,438,092 - B158DRAFT_1394 0.62 -0.4
1,438,108 + B158DRAFT_1394 0.63 -0.7
1,438,182 - B158DRAFT_1394 0.67 -0.0
1,438,248 + B158DRAFT_1394 0.71 +0.1
1,438,264 - B158DRAFT_1394 0.72 +0.0
1,438,266 - B158DRAFT_1394 0.72 -1.6
1,438,266 - B158DRAFT_1394 0.72 -0.7
1,438,301 - B158DRAFT_1394 0.74 -0.1
1,438,301 - B158DRAFT_1394 0.74 +0.5
1,438,353 + B158DRAFT_1394 0.77 -0.0
1,438,424 + B158DRAFT_1394 0.81 -0.9
1,438,425 + B158DRAFT_1394 0.81 -0.9
1,438,480 - B158DRAFT_1394 0.84 -1.0
1,438,485 - B158DRAFT_1394 0.84 -0.5
1,438,540 - B158DRAFT_1394 0.88 -0.4
1,438,572 - B158DRAFT_1394 0.90 +0.4
1,438,572 - B158DRAFT_1394 0.90 -0.2
1,438,613 - -0.1
1,438,743 + -0.3
1,438,810 - +0.1
1,438,812 + +0.3
1,438,812 + +0.0
1,438,820 - +0.0
1,438,918 + B158DRAFT_1395 0.20 -0.6
1,439,036 - B158DRAFT_1395 0.36 +0.7
1,439,036 - B158DRAFT_1395 0.36 +1.0
1,439,056 - B158DRAFT_1395 0.39 +0.0
1,439,068 - B158DRAFT_1395 0.40 +1.2
1,439,127 + B158DRAFT_1395 0.48 +0.4
1,439,142 - B158DRAFT_1395 0.50 +0.3
1,439,144 + B158DRAFT_1395 0.51 +2.3
1,439,183 + B158DRAFT_1395 0.56 +0.2
1,439,184 + B158DRAFT_1395 0.56 +0.4
1,439,191 - B158DRAFT_1395 0.57 +0.4
1,439,191 - B158DRAFT_1395 0.57 +0.4
1,439,191 - B158DRAFT_1395 0.57 -0.1
1,439,263 + B158DRAFT_1395 0.67 +0.3
1,439,353 + B158DRAFT_1395 0.79 -0.4
1,439,410 + B158DRAFT_1395 0.87 -0.1
1,439,412 + B158DRAFT_1395 0.87 +0.5
1,439,420 - B158DRAFT_1395 0.88 +0.9
1,439,420 - B158DRAFT_1395 0.88 -0.1
1,439,438 + +0.7
1,439,534 + -0.0
1,439,542 - +0.4
1,439,565 + +0.3
1,439,611 - +0.0
1,439,661 - +0.2
1,439,738 - -0.2
1,439,745 + +0.8
1,439,753 - -0.0
1,439,753 - -0.5

Or see this region's nucleotide sequence