Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1339 and B158DRAFT_1340 are separated by 130 nucleotides B158DRAFT_1340 and B158DRAFT_1341 overlap by 8 nucleotides B158DRAFT_1341 and B158DRAFT_1342 are separated by 179 nucleotides
B158DRAFT_1339: B158DRAFT_1339 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 1,380,566 to 1,381,939
_1339
B158DRAFT_1340: B158DRAFT_1340 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 1,382,070 to 1,382,633
_1340
B158DRAFT_1341: B158DRAFT_1341 - aminodeoxychorismate synthase, component I, bacterial clade, at 1,382,626 to 1,384,044
_1341
B158DRAFT_1342: B158DRAFT_1342 - fumarase, class I, homodimeric (EC 4.2.1.2), at 1,384,224 to 1,385,729
_1342
Position (kb)
1382
1383
1384
1385 Strain fitness (log2 ratio)
-1
0
1 at 1381.741 kb on - strand, within B158DRAFT_1339 at 1381.761 kb on + strand, within B158DRAFT_1339 at 1381.762 kb on - strand, within B158DRAFT_1339 at 1381.762 kb on - strand, within B158DRAFT_1339 at 1381.774 kb on + strand, within B158DRAFT_1339 at 1381.854 kb on - strand at 1381.854 kb on - strand at 1381.868 kb on + strand at 1381.873 kb on + strand at 1381.873 kb on + strand at 1381.873 kb on + strand at 1381.873 kb on + strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.881 kb on - strand at 1381.892 kb on + strand at 1381.892 kb on + strand at 1381.898 kb on + strand at 1381.916 kb on - strand at 1381.990 kb on + strand at 1382.000 kb on + strand at 1382.003 kb on - strand at 1382.068 kb on + strand at 1382.068 kb on + strand at 1382.075 kb on - strand at 1382.077 kb on - strand at 1382.077 kb on - strand at 1382.138 kb on + strand, within B158DRAFT_1340 at 1382.166 kb on + strand, within B158DRAFT_1340 at 1382.199 kb on - strand, within B158DRAFT_1340 at 1382.204 kb on - strand, within B158DRAFT_1340 at 1382.242 kb on - strand, within B158DRAFT_1340 at 1382.267 kb on + strand, within B158DRAFT_1340 at 1382.299 kb on + strand, within B158DRAFT_1340 at 1382.300 kb on + strand, within B158DRAFT_1340 at 1382.382 kb on - strand, within B158DRAFT_1340 at 1382.395 kb on + strand, within B158DRAFT_1340 at 1382.395 kb on + strand, within B158DRAFT_1340 at 1382.400 kb on + strand, within B158DRAFT_1340 at 1382.403 kb on - strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.405 kb on + strand, within B158DRAFT_1340 at 1382.408 kb on - strand, within B158DRAFT_1340 at 1382.410 kb on + strand, within B158DRAFT_1340 at 1382.413 kb on - strand, within B158DRAFT_1340 at 1382.413 kb on - strand, within B158DRAFT_1340 at 1382.418 kb on - strand, within B158DRAFT_1340 at 1382.460 kb on + strand, within B158DRAFT_1340 at 1382.460 kb on + strand, within B158DRAFT_1340 at 1382.503 kb on + strand, within B158DRAFT_1340 at 1382.503 kb on + strand, within B158DRAFT_1340 at 1382.556 kb on + strand, within B158DRAFT_1340 at 1382.558 kb on + strand, within B158DRAFT_1340 at 1382.558 kb on + strand, within B158DRAFT_1340 at 1382.598 kb on + strand at 1382.604 kb on + strand at 1382.609 kb on + strand at 1382.612 kb on - strand at 1382.614 kb on + strand at 1382.644 kb on + strand at 1382.645 kb on + strand at 1382.653 kb on - strand at 1382.701 kb on - strand at 1382.707 kb on + strand at 1382.715 kb on - strand at 1382.715 kb on - strand at 1382.758 kb on + strand at 1382.803 kb on + strand, within B158DRAFT_1341 at 1382.803 kb on + strand, within B158DRAFT_1341 at 1382.803 kb on + strand, within B158DRAFT_1341 at 1382.808 kb on + strand, within B158DRAFT_1341 at 1382.816 kb on - strand, within B158DRAFT_1341 at 1382.823 kb on + strand, within B158DRAFT_1341 at 1382.834 kb on - strand, within B158DRAFT_1341 at 1382.859 kb on + strand, within B158DRAFT_1341 at 1382.867 kb on - strand, within B158DRAFT_1341 at 1382.872 kb on + strand, within B158DRAFT_1341 at 1382.872 kb on + strand, within B158DRAFT_1341 at 1382.872 kb on + strand, within B158DRAFT_1341 at 1382.880 kb on - strand, within B158DRAFT_1341 at 1382.880 kb on - strand, within B158DRAFT_1341 at 1382.963 kb on + strand, within B158DRAFT_1341 at 1382.994 kb on - strand, within B158DRAFT_1341 at 1383.380 kb on - strand, within B158DRAFT_1341 at 1383.395 kb on - strand, within B158DRAFT_1341 at 1383.417 kb on + strand, within B158DRAFT_1341 at 1383.417 kb on + strand, within B158DRAFT_1341 at 1383.422 kb on + strand, within B158DRAFT_1341 at 1383.425 kb on - strand, within B158DRAFT_1341 at 1383.430 kb on - strand, within B158DRAFT_1341 at 1383.698 kb on - strand, within B158DRAFT_1341 at 1383.765 kb on + strand, within B158DRAFT_1341 at 1383.805 kb on + strand, within B158DRAFT_1341 at 1383.805 kb on + strand, within B158DRAFT_1341 at 1383.805 kb on + strand, within B158DRAFT_1341 at 1383.805 kb on + strand, within B158DRAFT_1341 at 1383.813 kb on - strand, within B158DRAFT_1341 at 1383.818 kb on + strand, within B158DRAFT_1341 at 1383.818 kb on + strand, within B158DRAFT_1341 at 1383.818 kb on + strand, within B158DRAFT_1341 at 1383.826 kb on - strand, within B158DRAFT_1341 at 1383.894 kb on + strand, within B158DRAFT_1341 at 1383.894 kb on + strand, within B158DRAFT_1341 at 1383.902 kb on - strand, within B158DRAFT_1341 at 1383.902 kb on - strand, within B158DRAFT_1341 at 1383.944 kb on + strand at 1383.949 kb on + strand at 1383.952 kb on - strand at 1383.957 kb on - strand at 1383.979 kb on + strand at 1383.979 kb on + strand at 1383.986 kb on + strand at 1383.992 kb on - strand at 1384.000 kb on - strand at 1384.136 kb on - strand at 1384.178 kb on + strand at 1384.178 kb on + strand at 1384.191 kb on + strand at 1384.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml remove 1,381,741 - B158DRAFT_1339 0.86 -0.2 1,381,761 + B158DRAFT_1339 0.87 -0.9 1,381,762 - B158DRAFT_1339 0.87 +0.2 1,381,762 - B158DRAFT_1339 0.87 -0.2 1,381,774 + B158DRAFT_1339 0.88 -1.3 1,381,854 - -1.4 1,381,854 - -0.5 1,381,868 + -0.4 1,381,873 + -1.2 1,381,873 + -0.9 1,381,873 + -0.7 1,381,873 + -0.2 1,381,881 - -1.0 1,381,881 - -0.5 1,381,881 - -1.1 1,381,881 - -1.1 1,381,881 - -0.6 1,381,881 - -0.4 1,381,892 + -1.1 1,381,892 + -0.2 1,381,898 + -1.2 1,381,916 - -0.8 1,381,990 + -0.4 1,382,000 + -0.1 1,382,003 - +0.2 1,382,068 + -0.1 1,382,068 + -0.1 1,382,075 - +0.2 1,382,077 - -0.3 1,382,077 - +0.2 1,382,138 + B158DRAFT_1340 0.12 -0.5 1,382,166 + B158DRAFT_1340 0.17 +0.4 1,382,199 - B158DRAFT_1340 0.23 -0.3 1,382,204 - B158DRAFT_1340 0.24 +0.0 1,382,242 - B158DRAFT_1340 0.30 -0.3 1,382,267 + B158DRAFT_1340 0.35 -0.3 1,382,299 + B158DRAFT_1340 0.41 -0.5 1,382,300 + B158DRAFT_1340 0.41 +0.2 1,382,382 - B158DRAFT_1340 0.55 -0.5 1,382,395 + B158DRAFT_1340 0.58 +0.2 1,382,395 + B158DRAFT_1340 0.58 +0.1 1,382,400 + B158DRAFT_1340 0.59 -0.7 1,382,403 - B158DRAFT_1340 0.59 -0.3 1,382,405 + B158DRAFT_1340 0.59 +0.1 1,382,405 + B158DRAFT_1340 0.59 +0.4 1,382,405 + B158DRAFT_1340 0.59 -0.5 1,382,405 + B158DRAFT_1340 0.59 +0.1 1,382,408 - B158DRAFT_1340 0.60 +0.2 1,382,410 + B158DRAFT_1340 0.60 -0.5 1,382,413 - B158DRAFT_1340 0.61 -0.0 1,382,413 - B158DRAFT_1340 0.61 +0.6 1,382,418 - B158DRAFT_1340 0.62 +0.4 1,382,460 + B158DRAFT_1340 0.69 +0.1 1,382,460 + B158DRAFT_1340 0.69 -0.1 1,382,503 + B158DRAFT_1340 0.77 -0.1 1,382,503 + B158DRAFT_1340 0.77 -0.5 1,382,556 + B158DRAFT_1340 0.86 -0.8 1,382,558 + B158DRAFT_1340 0.87 -0.2 1,382,558 + B158DRAFT_1340 0.87 +0.4 1,382,598 + -0.2 1,382,604 + +0.6 1,382,609 + +0.2 1,382,612 - -0.2 1,382,614 + -0.2 1,382,644 + -0.5 1,382,645 + -0.3 1,382,653 - -0.5 1,382,701 - -0.4 1,382,707 + +0.3 1,382,715 - +0.6 1,382,715 - -0.1 1,382,758 + -0.1 1,382,803 + B158DRAFT_1341 0.12 -0.4 1,382,803 + B158DRAFT_1341 0.12 -0.1 1,382,803 + B158DRAFT_1341 0.12 +0.1 1,382,808 + B158DRAFT_1341 0.13 +0.0 1,382,816 - B158DRAFT_1341 0.13 -0.0 1,382,823 + B158DRAFT_1341 0.14 +0.1 1,382,834 - B158DRAFT_1341 0.15 +0.5 1,382,859 + B158DRAFT_1341 0.16 +0.8 1,382,867 - B158DRAFT_1341 0.17 +1.0 1,382,872 + B158DRAFT_1341 0.17 -0.1 1,382,872 + B158DRAFT_1341 0.17 -0.5 1,382,872 + B158DRAFT_1341 0.17 +0.3 1,382,880 - B158DRAFT_1341 0.18 -0.3 1,382,880 - B158DRAFT_1341 0.18 -0.8 1,382,963 + B158DRAFT_1341 0.24 +0.3 1,382,994 - B158DRAFT_1341 0.26 -0.1 1,383,380 - B158DRAFT_1341 0.53 +0.0 1,383,395 - B158DRAFT_1341 0.54 -0.2 1,383,417 + B158DRAFT_1341 0.56 -0.3 1,383,417 + B158DRAFT_1341 0.56 -0.7 1,383,422 + B158DRAFT_1341 0.56 -0.3 1,383,425 - B158DRAFT_1341 0.56 +0.3 1,383,430 - B158DRAFT_1341 0.57 +0.6 1,383,698 - B158DRAFT_1341 0.76 +0.1 1,383,765 + B158DRAFT_1341 0.80 +0.7 1,383,805 + B158DRAFT_1341 0.83 -0.3 1,383,805 + B158DRAFT_1341 0.83 +0.4 1,383,805 + B158DRAFT_1341 0.83 +0.2 1,383,805 + B158DRAFT_1341 0.83 -0.4 1,383,813 - B158DRAFT_1341 0.84 +0.6 1,383,818 + B158DRAFT_1341 0.84 +0.2 1,383,818 + B158DRAFT_1341 0.84 +0.0 1,383,818 + B158DRAFT_1341 0.84 +1.4 1,383,826 - B158DRAFT_1341 0.85 -0.2 1,383,894 + B158DRAFT_1341 0.89 -0.4 1,383,894 + B158DRAFT_1341 0.89 +1.4 1,383,902 - B158DRAFT_1341 0.90 -0.5 1,383,902 - B158DRAFT_1341 0.90 -0.3 1,383,944 + +0.1 1,383,949 + -0.3 1,383,952 - +0.0 1,383,957 - +0.1 1,383,979 + -0.5 1,383,979 + +1.0 1,383,986 + -0.1 1,383,992 - -0.2 1,384,000 - -0.6 1,384,136 - -0.7 1,384,178 + +0.0 1,384,178 + +0.6 1,384,191 + +1.3 1,384,213 + -1.4
Or see this region's nucleotide sequence