Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0990

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0989 and B158DRAFT_0990 are separated by 258 nucleotidesB158DRAFT_0990 and B158DRAFT_0991 overlap by 8 nucleotidesB158DRAFT_0991 and B158DRAFT_0992 overlap by 4 nucleotides B158DRAFT_0989: B158DRAFT_0989 - Predicted membrane protein, at 1,023,255 to 1,024,241 _0989 B158DRAFT_0990: B158DRAFT_0990 - Predicted transcriptional regulators, at 1,024,500 to 1,024,874 _0990 B158DRAFT_0991: B158DRAFT_0991 - ABC-type multidrug transport system, ATPase component, at 1,024,867 to 1,025,724 _0991 B158DRAFT_0992: B158DRAFT_0992 - hypothetical protein, at 1,025,721 to 1,026,677 _0992 Position (kb) 1024 1025Strain fitness (log2 ratio) -1 0 1at 1023.505 kb on + strand, within B158DRAFT_0989at 1023.517 kb on - strand, within B158DRAFT_0989at 1023.518 kb on - strand, within B158DRAFT_0989at 1023.596 kb on - strand, within B158DRAFT_0989at 1023.611 kb on + strand, within B158DRAFT_0989at 1023.612 kb on + strand, within B158DRAFT_0989at 1023.620 kb on - strand, within B158DRAFT_0989at 1023.754 kb on - strand, within B158DRAFT_0989at 1023.871 kb on + strand, within B158DRAFT_0989at 1023.879 kb on - strand, within B158DRAFT_0989at 1023.879 kb on - strand, within B158DRAFT_0989at 1023.907 kb on + strand, within B158DRAFT_0989at 1023.907 kb on + strand, within B158DRAFT_0989at 1023.907 kb on + strand, within B158DRAFT_0989at 1023.912 kb on + strand, within B158DRAFT_0989at 1023.921 kb on + strand, within B158DRAFT_0989at 1023.921 kb on + strand, within B158DRAFT_0989at 1023.921 kb on + strand, within B158DRAFT_0989at 1023.929 kb on - strand, within B158DRAFT_0989at 1023.968 kb on + strand, within B158DRAFT_0989at 1023.979 kb on + strand, within B158DRAFT_0989at 1023.979 kb on + strand, within B158DRAFT_0989at 1023.979 kb on + strand, within B158DRAFT_0989at 1023.987 kb on - strand, within B158DRAFT_0989at 1023.987 kb on - strand, within B158DRAFT_0989at 1023.999 kb on - strand, within B158DRAFT_0989at 1023.999 kb on - strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.001 kb on + strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.009 kb on - strand, within B158DRAFT_0989at 1024.027 kb on + strand, within B158DRAFT_0989at 1024.027 kb on + strand, within B158DRAFT_0989at 1024.027 kb on + strand, within B158DRAFT_0989at 1024.035 kb on - strand, within B158DRAFT_0989at 1024.035 kb on - strand, within B158DRAFT_0989at 1024.044 kb on + strand, within B158DRAFT_0989at 1024.058 kb on + strand, within B158DRAFT_0989at 1024.058 kb on - strand, within B158DRAFT_0989at 1024.060 kb on + strand, within B158DRAFT_0989at 1024.068 kb on - strand, within B158DRAFT_0989at 1024.092 kb on - strand, within B158DRAFT_0989at 1024.169 kb on + strandat 1024.179 kb on - strandat 1024.179 kb on - strandat 1024.189 kb on - strandat 1024.244 kb on + strandat 1024.244 kb on + strandat 1024.246 kb on + strandat 1024.301 kb on - strandat 1024.303 kb on + strandat 1024.303 kb on + strandat 1024.303 kb on + strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.311 kb on - strandat 1024.467 kb on - strandat 1024.474 kb on + strandat 1024.482 kb on - strandat 1024.556 kb on - strand, within B158DRAFT_0990at 1024.597 kb on - strand, within B158DRAFT_0990at 1024.616 kb on - strand, within B158DRAFT_0990at 1024.652 kb on + strand, within B158DRAFT_0990at 1024.660 kb on - strand, within B158DRAFT_0990at 1024.660 kb on - strand, within B158DRAFT_0990at 1024.766 kb on + strand, within B158DRAFT_0990at 1024.766 kb on + strand, within B158DRAFT_0990at 1024.766 kb on + strand, within B158DRAFT_0990at 1024.766 kb on + strand, within B158DRAFT_0990at 1024.766 kb on - strand, within B158DRAFT_0990at 1024.774 kb on - strand, within B158DRAFT_0990at 1024.774 kb on - strand, within B158DRAFT_0990at 1024.774 kb on - strand, within B158DRAFT_0990at 1024.774 kb on - strand, within B158DRAFT_0990at 1024.774 kb on - strand, within B158DRAFT_0990at 1024.774 kb on - strand, within B158DRAFT_0990at 1024.774 kb on - strand, within B158DRAFT_0990at 1024.782 kb on - strand, within B158DRAFT_0990at 1024.783 kb on + strand, within B158DRAFT_0990at 1024.835 kb on + strand, within B158DRAFT_0990at 1024.844 kb on + strandat 1024.844 kb on + strandat 1024.852 kb on - strandat 1024.857 kb on - strandat 1024.859 kb on - strandat 1025.020 kb on + strand, within B158DRAFT_0991at 1025.021 kb on + strand, within B158DRAFT_0991at 1025.021 kb on + strand, within B158DRAFT_0991at 1025.021 kb on + strand, within B158DRAFT_0991at 1025.021 kb on + strand, within B158DRAFT_0991at 1025.029 kb on - strand, within B158DRAFT_0991at 1025.029 kb on - strand, within B158DRAFT_0991at 1025.065 kb on - strand, within B158DRAFT_0991at 1025.130 kb on - strand, within B158DRAFT_0991at 1025.135 kb on + strand, within B158DRAFT_0991at 1025.143 kb on - strand, within B158DRAFT_0991at 1025.159 kb on + strand, within B158DRAFT_0991at 1025.164 kb on + strand, within B158DRAFT_0991at 1025.167 kb on - strand, within B158DRAFT_0991at 1025.167 kb on - strand, within B158DRAFT_0991at 1025.179 kb on - strand, within B158DRAFT_0991at 1025.179 kb on - strand, within B158DRAFT_0991at 1025.189 kb on + strand, within B158DRAFT_0991at 1025.189 kb on + strand, within B158DRAFT_0991at 1025.189 kb on + strand, within B158DRAFT_0991at 1025.189 kb on + strand, within B158DRAFT_0991at 1025.190 kb on - strand, within B158DRAFT_0991at 1025.197 kb on - strand, within B158DRAFT_0991at 1025.197 kb on - strand, within B158DRAFT_0991at 1025.197 kb on - strand, within B158DRAFT_0991at 1025.197 kb on - strand, within B158DRAFT_0991at 1025.197 kb on - strand, within B158DRAFT_0991at 1025.197 kb on - strand, within B158DRAFT_0991at 1025.197 kb on - strand, within B158DRAFT_0991at 1025.252 kb on - strand, within B158DRAFT_0991at 1025.281 kb on + strand, within B158DRAFT_0991at 1025.287 kb on + strand, within B158DRAFT_0991at 1025.287 kb on + strand, within B158DRAFT_0991at 1025.287 kb on + strand, within B158DRAFT_0991at 1025.287 kb on + strand, within B158DRAFT_0991at 1025.294 kb on - strand, within B158DRAFT_0991at 1025.295 kb on - strand, within B158DRAFT_0991at 1025.295 kb on - strand, within B158DRAFT_0991at 1025.330 kb on + strand, within B158DRAFT_0991at 1025.344 kb on - strand, within B158DRAFT_0991at 1025.366 kb on - strand, within B158DRAFT_0991at 1025.560 kb on - strand, within B158DRAFT_0991at 1025.560 kb on - strand, within B158DRAFT_0991at 1025.622 kb on + strand, within B158DRAFT_0991at 1025.630 kb on - strand, within B158DRAFT_0991at 1025.630 kb on - strand, within B158DRAFT_0991at 1025.638 kb on - strand, within B158DRAFT_0991at 1025.649 kb on - strandat 1025.728 kb on - strandat 1025.730 kb on + strandat 1025.730 kb on + strandat 1025.730 kb on + strandat 1025.738 kb on - strandat 1025.780 kb on - strandat 1025.780 kb on - strandat 1025.813 kb on + strandat 1025.838 kb on + strand, within B158DRAFT_0992at 1025.856 kb on + strand, within B158DRAFT_0992at 1025.861 kb on + strand, within B158DRAFT_0992at 1025.869 kb on - strand, within B158DRAFT_0992

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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1,023,505 + B158DRAFT_0989 0.25 +0.2
1,023,517 - B158DRAFT_0989 0.27 -0.2
1,023,518 - B158DRAFT_0989 0.27 +0.1
1,023,596 - B158DRAFT_0989 0.35 -0.0
1,023,611 + B158DRAFT_0989 0.36 +0.3
1,023,612 + B158DRAFT_0989 0.36 -0.2
1,023,620 - B158DRAFT_0989 0.37 -0.0
1,023,754 - B158DRAFT_0989 0.51 -0.2
1,023,871 + B158DRAFT_0989 0.62 -0.8
1,023,879 - B158DRAFT_0989 0.63 -0.3
1,023,879 - B158DRAFT_0989 0.63 -0.5
1,023,907 + B158DRAFT_0989 0.66 -0.1
1,023,907 + B158DRAFT_0989 0.66 -0.4
1,023,907 + B158DRAFT_0989 0.66 +0.0
1,023,912 + B158DRAFT_0989 0.67 -0.0
1,023,921 + B158DRAFT_0989 0.67 -0.4
1,023,921 + B158DRAFT_0989 0.67 -1.0
1,023,921 + B158DRAFT_0989 0.67 +0.4
1,023,929 - B158DRAFT_0989 0.68 +0.3
1,023,968 + B158DRAFT_0989 0.72 +0.6
1,023,979 + B158DRAFT_0989 0.73 -0.1
1,023,979 + B158DRAFT_0989 0.73 +0.2
1,023,979 + B158DRAFT_0989 0.73 -0.0
1,023,987 - B158DRAFT_0989 0.74 -0.1
1,023,987 - B158DRAFT_0989 0.74 +0.3
1,023,999 - B158DRAFT_0989 0.75 -0.7
1,023,999 - B158DRAFT_0989 0.75 -0.1
1,024,001 + B158DRAFT_0989 0.76 +0.8
1,024,001 + B158DRAFT_0989 0.76 -0.5
1,024,001 + B158DRAFT_0989 0.76 -0.3
1,024,001 + B158DRAFT_0989 0.76 +0.1
1,024,001 + B158DRAFT_0989 0.76 -0.6
1,024,001 + B158DRAFT_0989 0.76 -0.1
1,024,001 + B158DRAFT_0989 0.76 -0.5
1,024,001 + B158DRAFT_0989 0.76 +0.1
1,024,001 + B158DRAFT_0989 0.76 -0.5
1,024,001 + B158DRAFT_0989 0.76 -0.3
1,024,009 - B158DRAFT_0989 0.76 -0.7
1,024,009 - B158DRAFT_0989 0.76 -0.1
1,024,009 - B158DRAFT_0989 0.76 -0.0
1,024,009 - B158DRAFT_0989 0.76 -0.7
1,024,009 - B158DRAFT_0989 0.76 -0.4
1,024,009 - B158DRAFT_0989 0.76 -0.4
1,024,009 - B158DRAFT_0989 0.76 +0.3
1,024,009 - B158DRAFT_0989 0.76 -0.7
1,024,027 + B158DRAFT_0989 0.78 +0.3
1,024,027 + B158DRAFT_0989 0.78 -0.0
1,024,027 + B158DRAFT_0989 0.78 -0.3
1,024,035 - B158DRAFT_0989 0.79 -0.3
1,024,035 - B158DRAFT_0989 0.79 +0.3
1,024,044 + B158DRAFT_0989 0.80 +0.1
1,024,058 + B158DRAFT_0989 0.81 +0.6
1,024,058 - B158DRAFT_0989 0.81 +0.1
1,024,060 + B158DRAFT_0989 0.82 +0.2
1,024,068 - B158DRAFT_0989 0.82 +0.7
1,024,092 - B158DRAFT_0989 0.85 -0.4
1,024,169 + +0.3
1,024,179 - +0.3
1,024,179 - +0.4
1,024,189 - +0.2
1,024,244 + +0.7
1,024,244 + +0.4
1,024,246 + +0.1
1,024,301 - +0.0
1,024,303 + +0.3
1,024,303 + +0.4
1,024,303 + -0.7
1,024,311 - -0.0
1,024,311 - -1.1
1,024,311 - +0.3
1,024,311 - +0.3
1,024,311 - -0.1
1,024,311 - +0.0
1,024,311 - -0.2
1,024,311 - -0.8
1,024,311 - +0.6
1,024,311 - -0.2
1,024,311 - +0.0
1,024,311 - -0.0
1,024,311 - +0.3
1,024,311 - -0.0
1,024,467 - -0.0
1,024,474 + -0.3
1,024,482 - -0.2
1,024,556 - B158DRAFT_0990 0.15 +0.7
1,024,597 - B158DRAFT_0990 0.26 -0.3
1,024,616 - B158DRAFT_0990 0.31 -0.4
1,024,652 + B158DRAFT_0990 0.41 +0.8
1,024,660 - B158DRAFT_0990 0.43 -0.2
1,024,660 - B158DRAFT_0990 0.43 -0.2
1,024,766 + B158DRAFT_0990 0.71 +0.3
1,024,766 + B158DRAFT_0990 0.71 +0.5
1,024,766 + B158DRAFT_0990 0.71 +0.9
1,024,766 + B158DRAFT_0990 0.71 +0.2
1,024,766 - B158DRAFT_0990 0.71 +0.3
1,024,774 - B158DRAFT_0990 0.73 +0.2
1,024,774 - B158DRAFT_0990 0.73 -0.1
1,024,774 - B158DRAFT_0990 0.73 -0.1
1,024,774 - B158DRAFT_0990 0.73 -0.9
1,024,774 - B158DRAFT_0990 0.73 -0.3
1,024,774 - B158DRAFT_0990 0.73 -0.7
1,024,774 - B158DRAFT_0990 0.73 -0.1
1,024,782 - B158DRAFT_0990 0.75 +0.1
1,024,783 + B158DRAFT_0990 0.75 +0.8
1,024,835 + B158DRAFT_0990 0.89 -0.1
1,024,844 + -1.0
1,024,844 + +0.2
1,024,852 - -0.4
1,024,857 - -0.5
1,024,859 - +0.1
1,025,020 + B158DRAFT_0991 0.18 +0.1
1,025,021 + B158DRAFT_0991 0.18 +0.1
1,025,021 + B158DRAFT_0991 0.18 -0.8
1,025,021 + B158DRAFT_0991 0.18 +0.2
1,025,021 + B158DRAFT_0991 0.18 -0.3
1,025,029 - B158DRAFT_0991 0.19 -0.0
1,025,029 - B158DRAFT_0991 0.19 +0.0
1,025,065 - B158DRAFT_0991 0.23 +0.3
1,025,130 - B158DRAFT_0991 0.31 +0.1
1,025,135 + B158DRAFT_0991 0.31 +0.0
1,025,143 - B158DRAFT_0991 0.32 +0.1
1,025,159 + B158DRAFT_0991 0.34 +0.1
1,025,164 + B158DRAFT_0991 0.35 +0.4
1,025,167 - B158DRAFT_0991 0.35 -0.5
1,025,167 - B158DRAFT_0991 0.35 +0.1
1,025,179 - B158DRAFT_0991 0.36 -0.4
1,025,179 - B158DRAFT_0991 0.36 -0.4
1,025,189 + B158DRAFT_0991 0.38 -0.2
1,025,189 + B158DRAFT_0991 0.38 -0.3
1,025,189 + B158DRAFT_0991 0.38 +0.4
1,025,189 + B158DRAFT_0991 0.38 -0.3
1,025,190 - B158DRAFT_0991 0.38 +0.0
1,025,197 - B158DRAFT_0991 0.38 -0.2
1,025,197 - B158DRAFT_0991 0.38 +0.1
1,025,197 - B158DRAFT_0991 0.38 -0.4
1,025,197 - B158DRAFT_0991 0.38 -0.7
1,025,197 - B158DRAFT_0991 0.38 -0.1
1,025,197 - B158DRAFT_0991 0.38 +0.5
1,025,197 - B158DRAFT_0991 0.38 +0.7
1,025,252 - B158DRAFT_0991 0.45 -0.4
1,025,281 + B158DRAFT_0991 0.48 +0.7
1,025,287 + B158DRAFT_0991 0.49 +0.0
1,025,287 + B158DRAFT_0991 0.49 -0.1
1,025,287 + B158DRAFT_0991 0.49 +0.4
1,025,287 + B158DRAFT_0991 0.49 -0.5
1,025,294 - B158DRAFT_0991 0.50 -0.1
1,025,295 - B158DRAFT_0991 0.50 -0.2
1,025,295 - B158DRAFT_0991 0.50 +0.1
1,025,330 + B158DRAFT_0991 0.54 -0.5
1,025,344 - B158DRAFT_0991 0.56 -0.9
1,025,366 - B158DRAFT_0991 0.58 -0.2
1,025,560 - B158DRAFT_0991 0.81 +0.3
1,025,560 - B158DRAFT_0991 0.81 +0.3
1,025,622 + B158DRAFT_0991 0.88 -0.1
1,025,630 - B158DRAFT_0991 0.89 +0.3
1,025,630 - B158DRAFT_0991 0.89 -0.5
1,025,638 - B158DRAFT_0991 0.90 +0.3
1,025,649 - -0.1
1,025,728 - +0.2
1,025,730 + +0.6
1,025,730 + -0.2
1,025,730 + +0.0
1,025,738 - -0.0
1,025,780 - +0.2
1,025,780 - -0.2
1,025,813 + -0.4
1,025,838 + B158DRAFT_0992 0.12 +0.1
1,025,856 + B158DRAFT_0992 0.14 +0.8
1,025,861 + B158DRAFT_0992 0.15 +0.1
1,025,869 - B158DRAFT_0992 0.15 +0.1

Or see this region's nucleotide sequence