Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0921

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0920 and B158DRAFT_0921 are separated by 44 nucleotidesB158DRAFT_0921 and B158DRAFT_0922 are separated by 82 nucleotides B158DRAFT_0920: B158DRAFT_0920 - Major Facilitator Superfamily., at 947,114 to 948,493 _0920 B158DRAFT_0921: B158DRAFT_0921 - hypothetical protein, at 948,538 to 949,296 _0921 B158DRAFT_0922: B158DRAFT_0922 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1, at 949,379 to 950,215 _0922 Position (kb) 948 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 947.676 kb on + strand, within B158DRAFT_0920at 947.676 kb on - strand, within B158DRAFT_0920at 947.676 kb on - strand, within B158DRAFT_0920at 947.676 kb on - strand, within B158DRAFT_0920at 947.676 kb on - strand, within B158DRAFT_0920at 947.676 kb on - strand, within B158DRAFT_0920at 947.676 kb on - strand, within B158DRAFT_0920at 947.676 kb on - strand, within B158DRAFT_0920at 947.684 kb on - strand, within B158DRAFT_0920at 947.684 kb on - strand, within B158DRAFT_0920at 948.091 kb on + strand, within B158DRAFT_0920at 948.097 kb on - strand, within B158DRAFT_0920at 948.159 kb on - strand, within B158DRAFT_0920at 948.188 kb on + strand, within B158DRAFT_0920at 948.196 kb on - strand, within B158DRAFT_0920at 948.196 kb on - strand, within B158DRAFT_0920at 948.196 kb on - strand, within B158DRAFT_0920at 948.201 kb on - strand, within B158DRAFT_0920at 948.233 kb on + strand, within B158DRAFT_0920at 948.436 kb on - strandat 948.436 kb on - strandat 948.654 kb on - strand, within B158DRAFT_0921at 948.738 kb on + strand, within B158DRAFT_0921at 948.741 kb on - strand, within B158DRAFT_0921at 948.746 kb on - strand, within B158DRAFT_0921at 948.768 kb on + strand, within B158DRAFT_0921at 948.784 kb on + strand, within B158DRAFT_0921at 948.784 kb on + strand, within B158DRAFT_0921at 948.792 kb on - strand, within B158DRAFT_0921at 948.827 kb on - strand, within B158DRAFT_0921at 948.835 kb on + strand, within B158DRAFT_0921at 948.840 kb on + strand, within B158DRAFT_0921at 948.840 kb on + strand, within B158DRAFT_0921at 948.855 kb on + strand, within B158DRAFT_0921at 948.897 kb on + strand, within B158DRAFT_0921at 948.905 kb on - strand, within B158DRAFT_0921at 948.954 kb on - strand, within B158DRAFT_0921at 949.004 kb on + strand, within B158DRAFT_0921at 949.012 kb on - strand, within B158DRAFT_0921at 949.012 kb on - strand, within B158DRAFT_0921at 949.012 kb on - strand, within B158DRAFT_0921at 949.030 kb on + strand, within B158DRAFT_0921at 949.030 kb on + strand, within B158DRAFT_0921at 949.032 kb on - strand, within B158DRAFT_0921at 949.032 kb on - strand, within B158DRAFT_0921at 949.098 kb on - strand, within B158DRAFT_0921at 949.177 kb on - strand, within B158DRAFT_0921at 949.177 kb on - strand, within B158DRAFT_0921at 949.248 kb on - strandat 949.268 kb on - strandat 949.271 kb on - strandat 949.333 kb on + strandat 949.362 kb on + strandat 949.362 kb on + strandat 949.370 kb on - strandat 949.370 kb on - strandat 949.370 kb on - strandat 949.393 kb on + strandat 949.393 kb on + strandat 949.436 kb on - strandat 949.540 kb on - strand, within B158DRAFT_0922at 949.618 kb on + strand, within B158DRAFT_0922at 949.656 kb on - strand, within B158DRAFT_0922at 949.679 kb on + strand, within B158DRAFT_0922at 949.680 kb on + strand, within B158DRAFT_0922at 949.710 kb on - strand, within B158DRAFT_0922at 949.778 kb on + strand, within B158DRAFT_0922at 949.824 kb on - strand, within B158DRAFT_0922at 949.824 kb on - strand, within B158DRAFT_0922at 949.824 kb on - strand, within B158DRAFT_0922at 949.901 kb on + strand, within B158DRAFT_0922at 949.901 kb on + strand, within B158DRAFT_0922at 949.919 kb on + strand, within B158DRAFT_0922at 949.927 kb on - strand, within B158DRAFT_0922at 949.936 kb on + strand, within B158DRAFT_0922at 949.951 kb on + strand, within B158DRAFT_0922at 949.959 kb on - strand, within B158DRAFT_0922at 949.979 kb on + strand, within B158DRAFT_0922at 949.987 kb on - strand, within B158DRAFT_0922at 950.012 kb on + strand, within B158DRAFT_0922at 950.025 kb on - strand, within B158DRAFT_0922at 950.033 kb on - strand, within B158DRAFT_0922at 950.033 kb on - strand, within B158DRAFT_0922at 950.033 kb on - strand, within B158DRAFT_0922at 950.080 kb on + strand, within B158DRAFT_0922at 950.080 kb on + strand, within B158DRAFT_0922at 950.088 kb on - strand, within B158DRAFT_0922at 950.088 kb on - strand, within B158DRAFT_0922at 950.088 kb on - strand, within B158DRAFT_0922at 950.088 kb on - strand, within B158DRAFT_0922at 950.088 kb on - strand, within B158DRAFT_0922at 950.102 kb on + strand, within B158DRAFT_0922at 950.136 kb on + strandat 950.141 kb on + strandat 950.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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947,676 + B158DRAFT_0920 0.41 -0.4
947,676 - B158DRAFT_0920 0.41 -1.4
947,676 - B158DRAFT_0920 0.41 -0.4
947,676 - B158DRAFT_0920 0.41 -1.8
947,676 - B158DRAFT_0920 0.41 -1.4
947,676 - B158DRAFT_0920 0.41 -2.7
947,676 - B158DRAFT_0920 0.41 -0.4
947,676 - B158DRAFT_0920 0.41 -0.3
947,684 - B158DRAFT_0920 0.41 -1.8
947,684 - B158DRAFT_0920 0.41 -2.9
948,091 + B158DRAFT_0920 0.71 -2.1
948,097 - B158DRAFT_0920 0.71 -1.8
948,159 - B158DRAFT_0920 0.76 -2.4
948,188 + B158DRAFT_0920 0.78 -1.4
948,196 - B158DRAFT_0920 0.78 -1.0
948,196 - B158DRAFT_0920 0.78 -2.3
948,196 - B158DRAFT_0920 0.78 -1.4
948,201 - B158DRAFT_0920 0.79 -1.4
948,233 + B158DRAFT_0920 0.81 -0.5
948,436 - +0.2
948,436 - -0.8
948,654 - B158DRAFT_0921 0.15 +1.2
948,738 + B158DRAFT_0921 0.26 +1.4
948,741 - B158DRAFT_0921 0.27 +1.4
948,746 - B158DRAFT_0921 0.27 +0.9
948,768 + B158DRAFT_0921 0.30 +1.9
948,784 + B158DRAFT_0921 0.32 +1.3
948,784 + B158DRAFT_0921 0.32 +1.7
948,792 - B158DRAFT_0921 0.33 +1.6
948,827 - B158DRAFT_0921 0.38 +1.2
948,835 + B158DRAFT_0921 0.39 +1.2
948,840 + B158DRAFT_0921 0.40 +1.9
948,840 + B158DRAFT_0921 0.40 +1.0
948,855 + B158DRAFT_0921 0.42 +1.7
948,897 + B158DRAFT_0921 0.47 +1.4
948,905 - B158DRAFT_0921 0.48 +1.7
948,954 - B158DRAFT_0921 0.55 +1.9
949,004 + B158DRAFT_0921 0.61 +1.4
949,012 - B158DRAFT_0921 0.62 +1.6
949,012 - B158DRAFT_0921 0.62 +1.8
949,012 - B158DRAFT_0921 0.62 +1.3
949,030 + B158DRAFT_0921 0.65 +1.2
949,030 + B158DRAFT_0921 0.65 +1.5
949,032 - B158DRAFT_0921 0.65 +1.6
949,032 - B158DRAFT_0921 0.65 +1.4
949,098 - B158DRAFT_0921 0.74 +1.2
949,177 - B158DRAFT_0921 0.84 +1.5
949,177 - B158DRAFT_0921 0.84 +2.0
949,248 - +1.9
949,268 - +2.1
949,271 - +1.5
949,333 + +1.3
949,362 + +0.2
949,362 + -0.1
949,370 - +0.0
949,370 - +0.4
949,370 - -0.2
949,393 + -1.0
949,393 + -0.1
949,436 - -0.0
949,540 - B158DRAFT_0922 0.19 -0.3
949,618 + B158DRAFT_0922 0.29 -0.8
949,656 - B158DRAFT_0922 0.33 -0.0
949,679 + B158DRAFT_0922 0.36 -0.7
949,680 + B158DRAFT_0922 0.36 -0.1
949,710 - B158DRAFT_0922 0.40 -0.4
949,778 + B158DRAFT_0922 0.48 -0.2
949,824 - B158DRAFT_0922 0.53 -0.2
949,824 - B158DRAFT_0922 0.53 +0.1
949,824 - B158DRAFT_0922 0.53 -0.6
949,901 + B158DRAFT_0922 0.62 +0.3
949,901 + B158DRAFT_0922 0.62 -2.2
949,919 + B158DRAFT_0922 0.65 +0.1
949,927 - B158DRAFT_0922 0.65 -0.2
949,936 + B158DRAFT_0922 0.67 -0.0
949,951 + B158DRAFT_0922 0.68 +0.6
949,959 - B158DRAFT_0922 0.69 +0.2
949,979 + B158DRAFT_0922 0.72 +0.2
949,987 - B158DRAFT_0922 0.73 -0.1
950,012 + B158DRAFT_0922 0.76 -0.5
950,025 - B158DRAFT_0922 0.77 -0.1
950,033 - B158DRAFT_0922 0.78 +0.6
950,033 - B158DRAFT_0922 0.78 -0.1
950,033 - B158DRAFT_0922 0.78 -0.2
950,080 + B158DRAFT_0922 0.84 -0.6
950,080 + B158DRAFT_0922 0.84 -0.5
950,088 - B158DRAFT_0922 0.85 +0.1
950,088 - B158DRAFT_0922 0.85 +0.8
950,088 - B158DRAFT_0922 0.85 -0.1
950,088 - B158DRAFT_0922 0.85 -0.0
950,088 - B158DRAFT_0922 0.85 -0.1
950,102 + B158DRAFT_0922 0.86 -0.2
950,136 + +0.3
950,141 + -0.3
950,141 + -0.5

Or see this region's nucleotide sequence