Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0837

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0836 and B158DRAFT_0837 overlap by 1 nucleotidesB158DRAFT_0837 and B158DRAFT_0838 overlap by 11 nucleotides B158DRAFT_0836: B158DRAFT_0836 - Type II secretory pathway, component ExeA (predicted ATPase), at 846,046 to 847,779 _0836 B158DRAFT_0837: B158DRAFT_0837 - hypothetical protein, at 847,779 to 848,597 _0837 B158DRAFT_0838: B158DRAFT_0838 - Predicted Zn-dependent peptidases, at 848,587 to 851,451 _0838 Position (kb) 847 848 849Strain fitness (log2 ratio) -2 -1 0 1 2 3at 846.782 kb on - strand, within B158DRAFT_0836at 846.811 kb on - strand, within B158DRAFT_0836at 846.811 kb on - strand, within B158DRAFT_0836at 846.822 kb on + strand, within B158DRAFT_0836at 846.912 kb on - strand, within B158DRAFT_0836at 846.929 kb on + strand, within B158DRAFT_0836at 846.937 kb on - strand, within B158DRAFT_0836at 847.005 kb on - strand, within B158DRAFT_0836at 847.026 kb on + strand, within B158DRAFT_0836at 847.026 kb on + strand, within B158DRAFT_0836at 847.026 kb on + strand, within B158DRAFT_0836at 847.034 kb on - strand, within B158DRAFT_0836at 847.055 kb on + strand, within B158DRAFT_0836at 847.062 kb on + strand, within B158DRAFT_0836at 847.179 kb on - strand, within B158DRAFT_0836at 847.302 kb on + strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.388 kb on - strand, within B158DRAFT_0836at 847.483 kb on + strand, within B158DRAFT_0836at 847.491 kb on - strand, within B158DRAFT_0836at 847.491 kb on - strand, within B158DRAFT_0836at 847.865 kb on - strand, within B158DRAFT_0837at 848.000 kb on - strand, within B158DRAFT_0837at 848.084 kb on + strand, within B158DRAFT_0837at 848.220 kb on - strand, within B158DRAFT_0837at 848.318 kb on - strand, within B158DRAFT_0837at 848.330 kb on - strand, within B158DRAFT_0837at 848.404 kb on + strand, within B158DRAFT_0837at 848.411 kb on - strand, within B158DRAFT_0837at 848.416 kb on - strand, within B158DRAFT_0837at 848.479 kb on + strand, within B158DRAFT_0837at 848.479 kb on + strand, within B158DRAFT_0837at 848.487 kb on - strand, within B158DRAFT_0837at 848.568 kb on + strandat 848.574 kb on + strandat 848.804 kb on + strandat 848.804 kb on + strandat 848.804 kb on + strandat 848.829 kb on - strandat 848.855 kb on + strandat 848.864 kb on - strandat 849.093 kb on + strand, within B158DRAFT_0838at 849.101 kb on - strand, within B158DRAFT_0838at 849.101 kb on - strand, within B158DRAFT_0838at 849.101 kb on - strand, within B158DRAFT_0838at 849.155 kb on + strand, within B158DRAFT_0838at 849.220 kb on - strand, within B158DRAFT_0838at 849.400 kb on + strand, within B158DRAFT_0838at 849.418 kb on - strand, within B158DRAFT_0838at 849.464 kb on + strand, within B158DRAFT_0838at 849.464 kb on + strand, within B158DRAFT_0838at 849.469 kb on + strand, within B158DRAFT_0838at 849.469 kb on + strand, within B158DRAFT_0838at 849.469 kb on + strand, within B158DRAFT_0838at 849.474 kb on + strand, within B158DRAFT_0838at 849.507 kb on + strand, within B158DRAFT_0838

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
remove
846,782 - B158DRAFT_0836 0.42 -0.2
846,811 - B158DRAFT_0836 0.44 -0.2
846,811 - B158DRAFT_0836 0.44 -0.3
846,822 + B158DRAFT_0836 0.45 -0.4
846,912 - B158DRAFT_0836 0.50 +0.0
846,929 + B158DRAFT_0836 0.51 +0.2
846,937 - B158DRAFT_0836 0.51 +0.3
847,005 - B158DRAFT_0836 0.55 -0.4
847,026 + B158DRAFT_0836 0.57 -0.2
847,026 + B158DRAFT_0836 0.57 -0.0
847,026 + B158DRAFT_0836 0.57 -0.4
847,034 - B158DRAFT_0836 0.57 +0.2
847,055 + B158DRAFT_0836 0.58 +0.1
847,062 + B158DRAFT_0836 0.59 +0.0
847,179 - B158DRAFT_0836 0.65 +0.0
847,302 + B158DRAFT_0836 0.72 +0.1
847,388 - B158DRAFT_0836 0.77 +0.2
847,388 - B158DRAFT_0836 0.77 -0.3
847,388 - B158DRAFT_0836 0.77 -0.3
847,388 - B158DRAFT_0836 0.77 +0.1
847,483 + B158DRAFT_0836 0.83 -1.1
847,491 - B158DRAFT_0836 0.83 +0.5
847,491 - B158DRAFT_0836 0.83 +0.1
847,865 - B158DRAFT_0837 0.11 +0.4
848,000 - B158DRAFT_0837 0.27 +0.0
848,084 + B158DRAFT_0837 0.37 -0.3
848,220 - B158DRAFT_0837 0.54 -0.1
848,318 - B158DRAFT_0837 0.66 +2.9
848,330 - B158DRAFT_0837 0.67 -0.4
848,404 + B158DRAFT_0837 0.76 +0.0
848,411 - B158DRAFT_0837 0.77 -0.5
848,416 - B158DRAFT_0837 0.78 -0.1
848,479 + B158DRAFT_0837 0.85 +0.4
848,479 + B158DRAFT_0837 0.85 -0.4
848,487 - B158DRAFT_0837 0.86 +0.2
848,568 + -0.9
848,574 + +0.2
848,804 + -0.0
848,804 + -0.0
848,804 + -2.1
848,829 - -0.0
848,855 + -0.4
848,864 - -0.2
849,093 + B158DRAFT_0838 0.18 -0.5
849,101 - B158DRAFT_0838 0.18 -0.8
849,101 - B158DRAFT_0838 0.18 +0.4
849,101 - B158DRAFT_0838 0.18 +0.2
849,155 + B158DRAFT_0838 0.20 +0.1
849,220 - B158DRAFT_0838 0.22 -0.1
849,400 + B158DRAFT_0838 0.28 -0.1
849,418 - B158DRAFT_0838 0.29 +0.3
849,464 + B158DRAFT_0838 0.31 -0.1
849,464 + B158DRAFT_0838 0.31 -0.0
849,469 + B158DRAFT_0838 0.31 +0.2
849,469 + B158DRAFT_0838 0.31 -0.4
849,469 + B158DRAFT_0838 0.31 +0.1
849,474 + B158DRAFT_0838 0.31 +0.1
849,507 + B158DRAFT_0838 0.32 +0.3

Or see this region's nucleotide sequence