Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0102

Experiment: m.b. Doxycycline hyclate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0101 and B158DRAFT_0102 are separated by 728 nucleotidesB158DRAFT_0102 and B158DRAFT_0103 are separated by 436 nucleotides B158DRAFT_0101: B158DRAFT_0101 - YceI-like domain., at 95,556 to 96,170 _0101 B158DRAFT_0102: B158DRAFT_0102 - hypothetical protein, at 96,899 to 97,384 _0102 B158DRAFT_0103: B158DRAFT_0103 - Zinc metalloprotease (elastase), at 97,821 to 100,025 _0103 Position (kb) 96 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 95.991 kb on + strand, within B158DRAFT_0101at 96.058 kb on + strand, within B158DRAFT_0101at 96.058 kb on + strand, within B158DRAFT_0101at 96.058 kb on + strand, within B158DRAFT_0101at 96.066 kb on - strand, within B158DRAFT_0101at 96.066 kb on - strand, within B158DRAFT_0101at 96.066 kb on - strand, within B158DRAFT_0101at 96.403 kb on - strandat 96.403 kb on - strandat 96.403 kb on - strandat 96.403 kb on - strandat 96.436 kb on + strandat 96.456 kb on + strandat 96.482 kb on + strandat 96.482 kb on + strandat 96.490 kb on - strandat 96.596 kb on + strandat 96.682 kb on + strandat 96.734 kb on - strandat 96.744 kb on - strandat 96.764 kb on + strandat 96.764 kb on + strandat 96.771 kb on - strandat 97.056 kb on + strand, within B158DRAFT_0102at 97.056 kb on + strand, within B158DRAFT_0102at 97.056 kb on + strand, within B158DRAFT_0102at 97.056 kb on + strand, within B158DRAFT_0102at 97.056 kb on + strand, within B158DRAFT_0102at 97.056 kb on + strand, within B158DRAFT_0102at 97.056 kb on + strand, within B158DRAFT_0102at 97.056 kb on + strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.064 kb on - strand, within B158DRAFT_0102at 97.125 kb on + strand, within B158DRAFT_0102at 97.130 kb on + strandat 97.158 kb on - strand, within B158DRAFT_0102at 97.158 kb on - strand, within B158DRAFT_0102at 97.211 kb on + strand, within B158DRAFT_0102at 97.211 kb on + strand, within B158DRAFT_0102at 97.211 kb on + strand, within B158DRAFT_0102at 97.294 kb on + strand, within B158DRAFT_0102at 97.299 kb on + strand, within B158DRAFT_0102at 97.331 kb on - strand, within B158DRAFT_0102at 97.392 kb on + strandat 97.392 kb on + strandat 97.392 kb on + strandat 97.392 kb on + strandat 97.400 kb on + strandat 97.400 kb on - strandat 97.414 kb on - strandat 97.414 kb on - strandat 97.442 kb on + strandat 97.450 kb on - strandat 97.496 kb on + strandat 97.504 kb on - strandat 97.539 kb on - strandat 97.539 kb on - strandat 97.576 kb on + strandat 97.587 kb on + strandat 97.733 kb on + strandat 97.741 kb on - strandat 97.756 kb on + strandat 97.823 kb on - strandat 97.871 kb on + strandat 97.944 kb on + strandat 98.011 kb on + strandat 98.011 kb on + strandat 98.011 kb on + strandat 98.014 kb on - strandat 98.019 kb on - strandat 98.020 kb on - strandat 98.021 kb on + strandat 98.152 kb on + strand, within B158DRAFT_0103at 98.152 kb on + strand, within B158DRAFT_0103at 98.160 kb on - strand, within B158DRAFT_0103at 98.167 kb on + strand, within B158DRAFT_0103at 98.181 kb on - strand, within B158DRAFT_0103at 98.212 kb on + strand, within B158DRAFT_0103at 98.212 kb on + strand, within B158DRAFT_0103at 98.336 kb on + strand, within B158DRAFT_0103at 98.372 kb on + strand, within B158DRAFT_0103at 98.375 kb on - strand, within B158DRAFT_0103at 98.375 kb on - strand, within B158DRAFT_0103

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.0625 mg/ml
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95,991 + B158DRAFT_0101 0.71 -0.1
96,058 + B158DRAFT_0101 0.82 +0.1
96,058 + B158DRAFT_0101 0.82 +0.1
96,058 + B158DRAFT_0101 0.82 +0.9
96,066 - B158DRAFT_0101 0.83 +0.3
96,066 - B158DRAFT_0101 0.83 -0.6
96,066 - B158DRAFT_0101 0.83 -0.3
96,403 - +0.3
96,403 - -2.0
96,403 - -0.0
96,403 - -0.3
96,436 + -0.0
96,456 + -0.1
96,482 + -0.7
96,482 + +0.2
96,490 - -0.2
96,596 + -0.5
96,682 + -0.7
96,734 - -0.5
96,744 - +0.3
96,764 + +0.3
96,764 + +0.5
96,771 - +0.3
97,056 + B158DRAFT_0102 0.32 -0.6
97,056 + B158DRAFT_0102 0.32 +0.1
97,056 + B158DRAFT_0102 0.32 -0.8
97,056 + B158DRAFT_0102 0.32 -0.2
97,056 + B158DRAFT_0102 0.32 +0.0
97,056 + B158DRAFT_0102 0.32 +0.6
97,056 + B158DRAFT_0102 0.32 -0.6
97,056 + B158DRAFT_0102 0.32 -0.4
97,064 - B158DRAFT_0102 0.34 -0.2
97,064 - B158DRAFT_0102 0.34 -0.3
97,064 - B158DRAFT_0102 0.34 +0.2
97,064 - B158DRAFT_0102 0.34 -0.1
97,064 - B158DRAFT_0102 0.34 +0.0
97,064 - B158DRAFT_0102 0.34 -0.1
97,064 - B158DRAFT_0102 0.34 -0.4
97,064 - B158DRAFT_0102 0.34 +0.5
97,064 - B158DRAFT_0102 0.34 +0.0
97,064 - B158DRAFT_0102 0.34 -0.4
97,064 - B158DRAFT_0102 0.34 -0.0
97,125 + B158DRAFT_0102 0.47 -0.6
97,130 + +1.9
97,158 - B158DRAFT_0102 0.53 +0.2
97,158 - B158DRAFT_0102 0.53 -0.2
97,211 + B158DRAFT_0102 0.64 -0.3
97,211 + B158DRAFT_0102 0.64 -0.1
97,211 + B158DRAFT_0102 0.64 -0.1
97,294 + B158DRAFT_0102 0.81 -0.3
97,299 + B158DRAFT_0102 0.82 -0.4
97,331 - B158DRAFT_0102 0.89 -0.1
97,392 + +1.0
97,392 + -0.4
97,392 + -0.2
97,392 + -0.3
97,400 + -0.0
97,400 - -0.1
97,414 - +0.2
97,414 - +0.3
97,442 + -1.8
97,450 - +0.5
97,496 + -0.1
97,504 - +0.0
97,539 - -0.0
97,539 - -2.3
97,576 + +0.0
97,587 + +0.4
97,733 + +0.2
97,741 - +0.1
97,756 + +0.0
97,823 - +0.5
97,871 + +0.4
97,944 + -0.8
98,011 + +0.2
98,011 + +0.3
98,011 + +0.5
98,014 - -0.2
98,019 - -0.6
98,020 - +1.4
98,021 + -0.0
98,152 + B158DRAFT_0103 0.15 -0.2
98,152 + B158DRAFT_0103 0.15 -0.1
98,160 - B158DRAFT_0103 0.15 -0.2
98,167 + B158DRAFT_0103 0.16 -0.6
98,181 - B158DRAFT_0103 0.16 +0.3
98,212 + B158DRAFT_0103 0.18 -0.5
98,212 + B158DRAFT_0103 0.18 +0.1
98,336 + B158DRAFT_0103 0.23 -0.6
98,372 + B158DRAFT_0103 0.25 -0.3
98,375 - B158DRAFT_0103 0.25 +0.3
98,375 - B158DRAFT_0103 0.25 +0.2

Or see this region's nucleotide sequence