Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2540

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2538 and B158DRAFT_2539 are separated by 16 nucleotidesB158DRAFT_2539 and B158DRAFT_2540 are separated by 60 nucleotidesB158DRAFT_2540 and B158DRAFT_2541 are separated by 57 nucleotidesB158DRAFT_2541 and B158DRAFT_2542 are separated by 183 nucleotides B158DRAFT_2538: B158DRAFT_2538 - hypothetical protein, at 729,264 to 730,010 _2538 B158DRAFT_2539: B158DRAFT_2539 - hypothetical protein, at 730,027 to 730,596 _2539 B158DRAFT_2540: B158DRAFT_2540 - hypothetical protein, at 730,657 to 731,133 _2540 B158DRAFT_2541: B158DRAFT_2541 - Protein of unknown function (DUF3579)., at 731,191 to 731,472 _2541 B158DRAFT_2542: B158DRAFT_2542 - Phosphatidylserine synthase, at 731,656 to 732,459 _2542 Position (kb) 730 731 732Strain fitness (log2 ratio) -2 -1 0 1 2at 729.660 kb on - strand, within B158DRAFT_2538at 729.677 kb on - strand, within B158DRAFT_2538at 729.713 kb on + strand, within B158DRAFT_2538at 729.735 kb on - strand, within B158DRAFT_2538at 729.735 kb on - strand, within B158DRAFT_2538at 729.785 kb on - strand, within B158DRAFT_2538at 729.804 kb on + strand, within B158DRAFT_2538at 729.813 kb on + strand, within B158DRAFT_2538at 729.822 kb on - strand, within B158DRAFT_2538at 729.846 kb on + strand, within B158DRAFT_2538at 729.856 kb on + strand, within B158DRAFT_2538at 729.856 kb on + strand, within B158DRAFT_2538at 729.856 kb on + strand, within B158DRAFT_2538at 729.856 kb on + strand, within B158DRAFT_2538at 729.856 kb on + strand, within B158DRAFT_2538at 729.864 kb on - strand, within B158DRAFT_2538at 729.864 kb on - strand, within B158DRAFT_2538at 729.864 kb on - strand, within B158DRAFT_2538at 729.864 kb on - strand, within B158DRAFT_2538at 729.864 kb on - strand, within B158DRAFT_2538at 729.928 kb on + strand, within B158DRAFT_2538at 729.928 kb on + strand, within B158DRAFT_2538at 729.936 kb on - strandat 730.094 kb on + strand, within B158DRAFT_2539at 730.094 kb on + strand, within B158DRAFT_2539at 730.094 kb on + strand, within B158DRAFT_2539at 730.094 kb on + strand, within B158DRAFT_2539at 730.094 kb on + strand, within B158DRAFT_2539at 730.094 kb on + strand, within B158DRAFT_2539at 730.095 kb on + strand, within B158DRAFT_2539at 730.102 kb on - strand, within B158DRAFT_2539at 730.104 kb on + strand, within B158DRAFT_2539at 730.104 kb on + strand, within B158DRAFT_2539at 730.308 kb on + strand, within B158DRAFT_2539at 730.311 kb on - strand, within B158DRAFT_2539at 730.311 kb on - strand, within B158DRAFT_2539at 730.343 kb on + strand, within B158DRAFT_2539at 730.357 kb on + strand, within B158DRAFT_2539at 730.357 kb on + strand, within B158DRAFT_2539at 730.357 kb on + strand, within B158DRAFT_2539at 730.365 kb on - strand, within B158DRAFT_2539at 730.365 kb on - strand, within B158DRAFT_2539at 730.367 kb on + strand, within B158DRAFT_2539at 730.377 kb on - strand, within B158DRAFT_2539at 730.377 kb on - strand, within B158DRAFT_2539at 730.398 kb on + strand, within B158DRAFT_2539at 730.442 kb on - strand, within B158DRAFT_2539at 730.442 kb on - strand, within B158DRAFT_2539at 730.515 kb on + strand, within B158DRAFT_2539at 730.541 kb on + strandat 730.555 kb on + strandat 730.719 kb on + strand, within B158DRAFT_2540at 730.719 kb on + strand, within B158DRAFT_2540at 730.727 kb on - strand, within B158DRAFT_2540at 730.898 kb on + strand, within B158DRAFT_2540at 730.914 kb on - strand, within B158DRAFT_2540at 730.939 kb on + strand, within B158DRAFT_2540at 731.064 kb on - strand, within B158DRAFT_2540at 731.074 kb on - strand, within B158DRAFT_2540at 731.089 kb on - strandat 731.236 kb on + strand, within B158DRAFT_2541at 731.255 kb on + strand, within B158DRAFT_2541at 731.263 kb on - strand, within B158DRAFT_2541at 731.273 kb on - strand, within B158DRAFT_2541at 731.273 kb on - strand, within B158DRAFT_2541at 731.299 kb on + strand, within B158DRAFT_2541at 731.299 kb on + strand, within B158DRAFT_2541at 731.299 kb on - strand, within B158DRAFT_2541at 731.307 kb on - strand, within B158DRAFT_2541at 731.336 kb on + strand, within B158DRAFT_2541at 731.336 kb on + strand, within B158DRAFT_2541at 731.336 kb on + strand, within B158DRAFT_2541at 731.339 kb on - strand, within B158DRAFT_2541at 731.402 kb on + strand, within B158DRAFT_2541at 731.402 kb on + strand, within B158DRAFT_2541at 731.405 kb on - strand, within B158DRAFT_2541at 731.410 kb on - strand, within B158DRAFT_2541at 731.411 kb on - strand, within B158DRAFT_2541at 731.455 kb on + strandat 731.463 kb on - strandat 731.493 kb on + strandat 731.527 kb on + strandat 731.573 kb on - strandat 731.575 kb on + strandat 731.575 kb on + strandat 731.583 kb on - strandat 731.596 kb on + strandat 731.596 kb on + strandat 731.596 kb on + strandat 731.606 kb on + strandat 731.606 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
remove
729,660 - B158DRAFT_2538 0.53 -0.5
729,677 - B158DRAFT_2538 0.55 +0.5
729,713 + B158DRAFT_2538 0.60 -0.2
729,735 - B158DRAFT_2538 0.63 -0.4
729,735 - B158DRAFT_2538 0.63 -0.5
729,785 - B158DRAFT_2538 0.70 -0.4
729,804 + B158DRAFT_2538 0.72 +0.1
729,813 + B158DRAFT_2538 0.73 +0.3
729,822 - B158DRAFT_2538 0.75 -0.6
729,846 + B158DRAFT_2538 0.78 -0.6
729,856 + B158DRAFT_2538 0.79 -0.0
729,856 + B158DRAFT_2538 0.79 +1.2
729,856 + B158DRAFT_2538 0.79 -0.4
729,856 + B158DRAFT_2538 0.79 +0.3
729,856 + B158DRAFT_2538 0.79 -0.1
729,864 - B158DRAFT_2538 0.80 +0.2
729,864 - B158DRAFT_2538 0.80 +0.2
729,864 - B158DRAFT_2538 0.80 +0.2
729,864 - B158DRAFT_2538 0.80 -0.6
729,864 - B158DRAFT_2538 0.80 +0.9
729,928 + B158DRAFT_2538 0.89 -0.9
729,928 + B158DRAFT_2538 0.89 -0.2
729,936 - -0.2
730,094 + B158DRAFT_2539 0.12 -0.4
730,094 + B158DRAFT_2539 0.12 +0.4
730,094 + B158DRAFT_2539 0.12 +0.1
730,094 + B158DRAFT_2539 0.12 -0.1
730,094 + B158DRAFT_2539 0.12 +0.2
730,094 + B158DRAFT_2539 0.12 +0.6
730,095 + B158DRAFT_2539 0.12 -0.0
730,102 - B158DRAFT_2539 0.13 -1.2
730,104 + B158DRAFT_2539 0.14 +0.4
730,104 + B158DRAFT_2539 0.14 +1.3
730,308 + B158DRAFT_2539 0.49 +0.2
730,311 - B158DRAFT_2539 0.50 -0.0
730,311 - B158DRAFT_2539 0.50 -0.5
730,343 + B158DRAFT_2539 0.55 -0.2
730,357 + B158DRAFT_2539 0.58 +0.0
730,357 + B158DRAFT_2539 0.58 +0.0
730,357 + B158DRAFT_2539 0.58 -1.3
730,365 - B158DRAFT_2539 0.59 -0.1
730,365 - B158DRAFT_2539 0.59 -0.2
730,367 + B158DRAFT_2539 0.60 +0.9
730,377 - B158DRAFT_2539 0.61 +0.5
730,377 - B158DRAFT_2539 0.61 -0.3
730,398 + B158DRAFT_2539 0.65 -0.2
730,442 - B158DRAFT_2539 0.73 +0.0
730,442 - B158DRAFT_2539 0.73 -0.4
730,515 + B158DRAFT_2539 0.86 -0.6
730,541 + +0.2
730,555 + -0.5
730,719 + B158DRAFT_2540 0.13 -0.2
730,719 + B158DRAFT_2540 0.13 -0.2
730,727 - B158DRAFT_2540 0.15 -0.0
730,898 + B158DRAFT_2540 0.51 -1.0
730,914 - B158DRAFT_2540 0.54 -0.3
730,939 + B158DRAFT_2540 0.59 +0.1
731,064 - B158DRAFT_2540 0.85 -0.2
731,074 - B158DRAFT_2540 0.87 -1.7
731,089 - -0.6
731,236 + B158DRAFT_2541 0.16 -0.1
731,255 + B158DRAFT_2541 0.23 -0.1
731,263 - B158DRAFT_2541 0.26 -0.8
731,273 - B158DRAFT_2541 0.29 -1.3
731,273 - B158DRAFT_2541 0.29 +0.6
731,299 + B158DRAFT_2541 0.38 +0.1
731,299 + B158DRAFT_2541 0.38 -0.2
731,299 - B158DRAFT_2541 0.38 -0.3
731,307 - B158DRAFT_2541 0.41 +0.3
731,336 + B158DRAFT_2541 0.51 +0.2
731,336 + B158DRAFT_2541 0.51 -2.7
731,336 + B158DRAFT_2541 0.51 -0.3
731,339 - B158DRAFT_2541 0.52 +0.0
731,402 + B158DRAFT_2541 0.75 +0.0
731,402 + B158DRAFT_2541 0.75 -0.7
731,405 - B158DRAFT_2541 0.76 -0.2
731,410 - B158DRAFT_2541 0.78 +0.2
731,411 - B158DRAFT_2541 0.78 +0.5
731,455 + +0.8
731,463 - -1.0
731,493 + +0.0
731,527 + +0.2
731,573 - -0.3
731,575 + -0.8
731,575 + -0.3
731,583 - -0.2
731,596 + +2.6
731,596 + -0.1
731,596 + -0.7
731,606 + -1.5
731,606 + -1.1

Or see this region's nucleotide sequence