Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2458

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2456 and B158DRAFT_2457 are separated by 66 nucleotidesB158DRAFT_2457 and B158DRAFT_2458 are separated by 170 nucleotidesB158DRAFT_2458 and B158DRAFT_2459 overlap by 4 nucleotides B158DRAFT_2456: B158DRAFT_2456 - cysteine synthase A, at 631,692 to 632,639 _2456 B158DRAFT_2457: B158DRAFT_2457 - methionine repressor, MetJ, at 632,706 to 633,002 _2457 B158DRAFT_2458: B158DRAFT_2458 - Homoserine acetyltransferase, at 633,173 to 634,192 _2458 B158DRAFT_2459: B158DRAFT_2459 - cystathionine gamma-synthase (EC 2.5.1.48), at 634,189 to 635,367 _2459 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1at 632.319 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456at 632.319 kb on + strand, within B158DRAFT_2456at 632.439 kb on + strand, within B158DRAFT_2456at 632.439 kb on + strand, within B158DRAFT_2456at 632.447 kb on - strand, within B158DRAFT_2456at 632.495 kb on - strand, within B158DRAFT_2456at 632.506 kb on + strand, within B158DRAFT_2456at 632.532 kb on - strand, within B158DRAFT_2456at 632.584 kb on + strandat 632.693 kb on - strandat 632.753 kb on - strand, within B158DRAFT_2457at 632.800 kb on + strand, within B158DRAFT_2457at 632.800 kb on + strand, within B158DRAFT_2457at 632.808 kb on - strand, within B158DRAFT_2457at 633.014 kb on - strandat 633.051 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.137 kb on + strandat 633.139 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.145 kb on - strandat 633.200 kb on + strandat 633.200 kb on + strandat 633.215 kb on - strandat 633.216 kb on - strandat 633.227 kb on + strandat 633.235 kb on - strandat 633.235 kb on - strandat 633.240 kb on + strandat 633.240 kb on + strandat 633.240 kb on + strandat 633.250 kb on + strandat 633.266 kb on - strandat 633.285 kb on - strand, within B158DRAFT_2458at 633.317 kb on - strand, within B158DRAFT_2458at 633.317 kb on - strand, within B158DRAFT_2458at 633.317 kb on - strand, within B158DRAFT_2458at 633.351 kb on + strand, within B158DRAFT_2458at 633.358 kb on + strand, within B158DRAFT_2458at 633.481 kb on + strand, within B158DRAFT_2458at 633.538 kb on + strand, within B158DRAFT_2458at 633.538 kb on + strand, within B158DRAFT_2458at 633.538 kb on + strand, within B158DRAFT_2458at 633.541 kb on - strand, within B158DRAFT_2458at 633.546 kb on - strand, within B158DRAFT_2458at 633.546 kb on - strand, within B158DRAFT_2458at 633.546 kb on - strand, within B158DRAFT_2458at 633.672 kb on + strand, within B158DRAFT_2458at 633.688 kb on + strand, within B158DRAFT_2458at 633.700 kb on + strand, within B158DRAFT_2458at 633.797 kb on + strand, within B158DRAFT_2458at 633.951 kb on + strand, within B158DRAFT_2458at 633.959 kb on - strand, within B158DRAFT_2458at 634.142 kb on + strandat 634.151 kb on - strandat 634.169 kb on - strandat 634.264 kb on + strandat 634.321 kb on + strand, within B158DRAFT_2459at 634.368 kb on - strand, within B158DRAFT_2459at 634.382 kb on + strand, within B158DRAFT_2459at 634.436 kb on - strand, within B158DRAFT_2459at 634.482 kb on - strand, within B158DRAFT_2459at 634.509 kb on + strand, within B158DRAFT_2459at 634.557 kb on + strand, within B158DRAFT_2459at 634.560 kb on - strand, within B158DRAFT_2459at 634.565 kb on - strand, within B158DRAFT_2459at 634.631 kb on - strand, within B158DRAFT_2459at 634.806 kb on - strand, within B158DRAFT_2459at 634.865 kb on + strand, within B158DRAFT_2459at 634.865 kb on + strand, within B158DRAFT_2459at 634.865 kb on + strand, within B158DRAFT_2459at 634.865 kb on + strand, within B158DRAFT_2459at 634.865 kb on + strand, within B158DRAFT_2459at 634.873 kb on - strand, within B158DRAFT_2459at 634.873 kb on - strand, within B158DRAFT_2459at 634.873 kb on - strand, within B158DRAFT_2459at 634.873 kb on - strand, within B158DRAFT_2459at 634.907 kb on + strand, within B158DRAFT_2459at 634.914 kb on - strand, within B158DRAFT_2459at 634.930 kb on - strand, within B158DRAFT_2459at 635.140 kb on - strand, within B158DRAFT_2459at 635.142 kb on + strand, within B158DRAFT_2459at 635.150 kb on - strand, within B158DRAFT_2459at 635.168 kb on - strand, within B158DRAFT_2459at 635.184 kb on + strand, within B158DRAFT_2459

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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632,319 + B158DRAFT_2456 0.66 +0.1
632,319 + B158DRAFT_2456 0.66 -0.8
632,319 + B158DRAFT_2456 0.66 -0.4
632,439 + B158DRAFT_2456 0.79 -0.5
632,439 + B158DRAFT_2456 0.79 -0.9
632,447 - B158DRAFT_2456 0.80 -1.1
632,495 - B158DRAFT_2456 0.85 +0.3
632,506 + B158DRAFT_2456 0.86 -0.3
632,532 - B158DRAFT_2456 0.89 -0.2
632,584 + -0.2
632,693 - -0.0
632,753 - B158DRAFT_2457 0.16 -0.0
632,800 + B158DRAFT_2457 0.32 -1.0
632,800 + B158DRAFT_2457 0.32 -1.8
632,808 - B158DRAFT_2457 0.34 +0.6
633,014 - +0.8
633,051 + -0.1
633,137 + +1.4
633,137 + -2.3
633,137 + +0.6
633,137 + -0.2
633,137 + +0.2
633,137 + +0.1
633,139 - +0.3
633,145 - -0.0
633,145 - -0.4
633,145 - +0.1
633,145 - +0.2
633,145 - -0.1
633,200 + +0.2
633,200 + +0.3
633,215 - -0.4
633,216 - -0.6
633,227 + -0.2
633,235 - -0.0
633,235 - -0.1
633,240 + +0.4
633,240 + -0.6
633,240 + -0.7
633,250 + -0.1
633,266 - +0.5
633,285 - B158DRAFT_2458 0.11 -0.5
633,317 - B158DRAFT_2458 0.14 +0.2
633,317 - B158DRAFT_2458 0.14 -0.1
633,317 - B158DRAFT_2458 0.14 -0.1
633,351 + B158DRAFT_2458 0.17 -0.8
633,358 + B158DRAFT_2458 0.18 +0.1
633,481 + B158DRAFT_2458 0.30 -0.2
633,538 + B158DRAFT_2458 0.36 -0.4
633,538 + B158DRAFT_2458 0.36 -0.1
633,538 + B158DRAFT_2458 0.36 -0.6
633,541 - B158DRAFT_2458 0.36 -0.0
633,546 - B158DRAFT_2458 0.37 +0.2
633,546 - B158DRAFT_2458 0.37 -0.4
633,546 - B158DRAFT_2458 0.37 -0.2
633,672 + B158DRAFT_2458 0.49 +0.2
633,688 + B158DRAFT_2458 0.50 -0.6
633,700 + B158DRAFT_2458 0.52 +0.1
633,797 + B158DRAFT_2458 0.61 -0.2
633,951 + B158DRAFT_2458 0.76 -0.1
633,959 - B158DRAFT_2458 0.77 +0.1
634,142 + -0.1
634,151 - -0.6
634,169 - -0.3
634,264 + -1.2
634,321 + B158DRAFT_2459 0.11 -0.1
634,368 - B158DRAFT_2459 0.15 +0.3
634,382 + B158DRAFT_2459 0.16 -0.3
634,436 - B158DRAFT_2459 0.21 -0.1
634,482 - B158DRAFT_2459 0.25 -0.0
634,509 + B158DRAFT_2459 0.27 +0.5
634,557 + B158DRAFT_2459 0.31 +0.0
634,560 - B158DRAFT_2459 0.31 -2.1
634,565 - B158DRAFT_2459 0.32 +0.4
634,631 - B158DRAFT_2459 0.37 +0.0
634,806 - B158DRAFT_2459 0.52 +0.2
634,865 + B158DRAFT_2459 0.57 +0.2
634,865 + B158DRAFT_2459 0.57 -0.3
634,865 + B158DRAFT_2459 0.57 -0.1
634,865 + B158DRAFT_2459 0.57 -0.4
634,865 + B158DRAFT_2459 0.57 +0.9
634,873 - B158DRAFT_2459 0.58 -0.0
634,873 - B158DRAFT_2459 0.58 -0.1
634,873 - B158DRAFT_2459 0.58 +0.8
634,873 - B158DRAFT_2459 0.58 -0.1
634,907 + B158DRAFT_2459 0.61 -0.3
634,914 - B158DRAFT_2459 0.61 -1.0
634,930 - B158DRAFT_2459 0.63 -0.2
635,140 - B158DRAFT_2459 0.81 +0.2
635,142 + B158DRAFT_2459 0.81 -0.8
635,150 - B158DRAFT_2459 0.82 -0.2
635,168 - B158DRAFT_2459 0.83 -0.6
635,184 + B158DRAFT_2459 0.84 -1.5

Or see this region's nucleotide sequence