Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0604

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0603 and B158DRAFT_0604 are separated by 58 nucleotidesB158DRAFT_0604 and B158DRAFT_0605 are separated by 51 nucleotidesB158DRAFT_0605 and B158DRAFT_0606 are separated by 82 nucleotides B158DRAFT_0603: B158DRAFT_0603 - heat-inducible transcription repressor HrcA, at 607,926 to 608,954 _0603 B158DRAFT_0604: B158DRAFT_0604 - Molecular chaperone GrpE (heat shock protein), at 609,013 to 609,648 _0604 B158DRAFT_0605: B158DRAFT_0605 - Uncharacterized protein conserved in bacteria, at 609,700 to 610,347 _0605 B158DRAFT_0606: B158DRAFT_0606 - Uncharacterized conserved protein, at 610,430 to 611,146 _0606 Position (kb) 609 610Strain fitness (log2 ratio) -2 -1 0 1at 608.057 kb on + strand, within B158DRAFT_0603at 608.065 kb on - strand, within B158DRAFT_0603at 608.083 kb on + strand, within B158DRAFT_0603at 608.134 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.249 kb on + strand, within B158DRAFT_0603at 608.252 kb on - strand, within B158DRAFT_0603at 608.254 kb on + strand, within B158DRAFT_0603at 608.254 kb on + strand, within B158DRAFT_0603at 608.260 kb on + strand, within B158DRAFT_0603at 608.261 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.268 kb on - strand, within B158DRAFT_0603at 608.278 kb on - strand, within B158DRAFT_0603at 608.278 kb on - strand, within B158DRAFT_0603at 608.300 kb on - strand, within B158DRAFT_0603at 608.327 kb on + strand, within B158DRAFT_0603at 608.335 kb on - strand, within B158DRAFT_0603at 608.358 kb on - strand, within B158DRAFT_0603at 608.400 kb on + strand, within B158DRAFT_0603at 608.425 kb on + strand, within B158DRAFT_0603at 608.433 kb on - strand, within B158DRAFT_0603at 608.493 kb on + strand, within B158DRAFT_0603at 608.495 kb on + strand, within B158DRAFT_0603at 608.501 kb on - strand, within B158DRAFT_0603at 608.501 kb on - strand, within B158DRAFT_0603at 608.503 kb on - strand, within B158DRAFT_0603at 608.536 kb on - strand, within B158DRAFT_0603at 608.573 kb on - strand, within B158DRAFT_0603at 608.604 kb on + strand, within B158DRAFT_0603at 608.622 kb on + strand, within B158DRAFT_0603at 608.622 kb on + strand, within B158DRAFT_0603at 608.624 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.630 kb on - strand, within B158DRAFT_0603at 608.659 kb on - strand, within B158DRAFT_0603at 608.669 kb on - strand, within B158DRAFT_0603at 608.760 kb on - strand, within B158DRAFT_0603at 608.842 kb on + strand, within B158DRAFT_0603at 608.844 kb on + strand, within B158DRAFT_0603at 608.852 kb on + strandat 608.860 kb on - strandat 608.862 kb on + strandat 608.869 kb on - strandat 608.888 kb on - strandat 608.900 kb on - strandat 608.900 kb on - strandat 608.997 kb on + strandat 608.997 kb on + strandat 608.997 kb on + strandat 608.997 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.007 kb on + strandat 609.107 kb on + strand, within B158DRAFT_0604at 609.107 kb on + strand, within B158DRAFT_0604at 609.107 kb on + strand, within B158DRAFT_0604at 609.117 kb on + strand, within B158DRAFT_0604at 609.117 kb on + strand, within B158DRAFT_0604at 609.117 kb on + strand, within B158DRAFT_0604at 609.653 kb on - strandat 609.668 kb on + strandat 609.675 kb on - strandat 609.725 kb on + strandat 609.757 kb on + strandat 609.824 kb on + strand, within B158DRAFT_0605at 609.832 kb on - strand, within B158DRAFT_0605at 609.843 kb on - strand, within B158DRAFT_0605at 609.910 kb on - strand, within B158DRAFT_0605at 609.924 kb on - strand, within B158DRAFT_0605at 609.929 kb on - strand, within B158DRAFT_0605at 609.934 kb on - strand, within B158DRAFT_0605at 609.934 kb on - strand, within B158DRAFT_0605at 609.934 kb on - strand, within B158DRAFT_0605at 609.951 kb on + strand, within B158DRAFT_0605at 609.976 kb on + strand, within B158DRAFT_0605at 610.130 kb on - strand, within B158DRAFT_0605at 610.181 kb on + strand, within B158DRAFT_0605at 610.189 kb on - strand, within B158DRAFT_0605at 610.189 kb on - strand, within B158DRAFT_0605at 610.223 kb on - strand, within B158DRAFT_0605at 610.299 kb on - strandat 610.349 kb on - strandat 610.356 kb on + strandat 610.356 kb on + strandat 610.356 kb on + strandat 610.366 kb on + strandat 610.368 kb on + strandat 610.376 kb on + strandat 610.376 kb on - strandat 610.384 kb on - strandat 610.398 kb on + strandat 610.442 kb on + strandat 610.442 kb on + strandat 610.442 kb on + strandat 610.500 kb on - strandat 610.517 kb on + strand, within B158DRAFT_0606at 610.527 kb on + strand, within B158DRAFT_0606at 610.537 kb on + strand, within B158DRAFT_0606at 610.537 kb on + strand, within B158DRAFT_0606at 610.545 kb on - strand, within B158DRAFT_0606at 610.545 kb on - strand, within B158DRAFT_0606at 610.565 kb on + strand, within B158DRAFT_0606at 610.568 kb on - strand, within B158DRAFT_0606at 610.573 kb on - strand, within B158DRAFT_0606at 610.575 kb on + strand, within B158DRAFT_0606at 610.583 kb on - strand, within B158DRAFT_0606at 610.619 kb on + strand, within B158DRAFT_0606at 610.627 kb on - strand, within B158DRAFT_0606at 610.636 kb on - strand, within B158DRAFT_0606at 610.640 kb on + strand, within B158DRAFT_0606at 610.640 kb on + strand, within B158DRAFT_0606at 610.648 kb on - strand, within B158DRAFT_0606

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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608,057 + B158DRAFT_0603 0.13 +0.4
608,065 - B158DRAFT_0603 0.14 -0.4
608,083 + B158DRAFT_0603 0.15 +0.1
608,134 + B158DRAFT_0603 0.20 -0.8
608,249 + B158DRAFT_0603 0.31 +0.4
608,249 + B158DRAFT_0603 0.31 +0.1
608,249 + B158DRAFT_0603 0.31 -0.5
608,252 - B158DRAFT_0603 0.32 +0.1
608,254 + B158DRAFT_0603 0.32 -0.4
608,254 + B158DRAFT_0603 0.32 +0.1
608,260 + B158DRAFT_0603 0.32 -0.1
608,261 - B158DRAFT_0603 0.33 -0.2
608,268 - B158DRAFT_0603 0.33 +0.3
608,268 - B158DRAFT_0603 0.33 -0.1
608,268 - B158DRAFT_0603 0.33 -0.0
608,268 - B158DRAFT_0603 0.33 +0.8
608,278 - B158DRAFT_0603 0.34 +0.2
608,278 - B158DRAFT_0603 0.34 +0.3
608,300 - B158DRAFT_0603 0.36 -0.0
608,327 + B158DRAFT_0603 0.39 +0.3
608,335 - B158DRAFT_0603 0.40 -1.4
608,358 - B158DRAFT_0603 0.42 +0.0
608,400 + B158DRAFT_0603 0.46 -0.2
608,425 + B158DRAFT_0603 0.48 -0.7
608,433 - B158DRAFT_0603 0.49 -0.5
608,493 + B158DRAFT_0603 0.55 -0.6
608,495 + B158DRAFT_0603 0.55 -0.1
608,501 - B158DRAFT_0603 0.56 -0.3
608,501 - B158DRAFT_0603 0.56 -0.5
608,503 - B158DRAFT_0603 0.56 -0.4
608,536 - B158DRAFT_0603 0.59 -0.1
608,573 - B158DRAFT_0603 0.63 -0.5
608,604 + B158DRAFT_0603 0.66 +0.5
608,622 + B158DRAFT_0603 0.68 -0.2
608,622 + B158DRAFT_0603 0.68 -0.9
608,624 - B158DRAFT_0603 0.68 -0.1
608,630 - B158DRAFT_0603 0.68 -0.1
608,630 - B158DRAFT_0603 0.68 -0.5
608,630 - B158DRAFT_0603 0.68 +0.1
608,659 - B158DRAFT_0603 0.71 +0.1
608,669 - B158DRAFT_0603 0.72 -0.5
608,760 - B158DRAFT_0603 0.81 +0.2
608,842 + B158DRAFT_0603 0.89 +0.0
608,844 + B158DRAFT_0603 0.89 -0.4
608,852 + +0.4
608,860 - +0.2
608,862 + +0.4
608,869 - -0.1
608,888 - -0.1
608,900 - -0.3
608,900 - -0.5
608,997 + -0.2
608,997 + -0.5
608,997 + -0.1
608,997 + -0.3
609,007 + +0.4
609,007 + -1.1
609,007 + -1.0
609,007 + -0.0
609,007 + +1.2
609,107 + B158DRAFT_0604 0.15 -1.5
609,107 + B158DRAFT_0604 0.15 -0.3
609,107 + B158DRAFT_0604 0.15 -0.6
609,117 + B158DRAFT_0604 0.16 -0.7
609,117 + B158DRAFT_0604 0.16 +1.3
609,117 + B158DRAFT_0604 0.16 -0.1
609,653 - -0.0
609,668 + -0.4
609,675 - -0.0
609,725 + +0.5
609,757 + +0.2
609,824 + B158DRAFT_0605 0.19 -0.0
609,832 - B158DRAFT_0605 0.20 -0.2
609,843 - B158DRAFT_0605 0.22 -0.1
609,910 - B158DRAFT_0605 0.32 -0.3
609,924 - B158DRAFT_0605 0.35 +0.6
609,929 - B158DRAFT_0605 0.35 +0.2
609,934 - B158DRAFT_0605 0.36 +0.5
609,934 - B158DRAFT_0605 0.36 -0.1
609,934 - B158DRAFT_0605 0.36 -0.6
609,951 + B158DRAFT_0605 0.39 +0.2
609,976 + B158DRAFT_0605 0.43 -0.2
610,130 - B158DRAFT_0605 0.66 +0.4
610,181 + B158DRAFT_0605 0.74 +0.1
610,189 - B158DRAFT_0605 0.75 -0.9
610,189 - B158DRAFT_0605 0.75 -0.6
610,223 - B158DRAFT_0605 0.81 +0.3
610,299 - -0.2
610,349 - -0.1
610,356 + -0.4
610,356 + +0.1
610,356 + +0.5
610,366 + +0.1
610,368 + -1.6
610,376 + +0.1
610,376 - +0.1
610,384 - -2.2
610,398 + +0.3
610,442 + +0.3
610,442 + +0.5
610,442 + +0.3
610,500 - -0.7
610,517 + B158DRAFT_0606 0.12 +0.1
610,527 + B158DRAFT_0606 0.14 -0.8
610,537 + B158DRAFT_0606 0.15 +0.1
610,537 + B158DRAFT_0606 0.15 +0.3
610,545 - B158DRAFT_0606 0.16 +0.0
610,545 - B158DRAFT_0606 0.16 +0.2
610,565 + B158DRAFT_0606 0.19 -0.5
610,568 - B158DRAFT_0606 0.19 -0.1
610,573 - B158DRAFT_0606 0.20 +0.1
610,575 + B158DRAFT_0606 0.20 -0.8
610,583 - B158DRAFT_0606 0.21 +0.1
610,619 + B158DRAFT_0606 0.26 -0.0
610,627 - B158DRAFT_0606 0.27 -1.0
610,636 - B158DRAFT_0606 0.29 -0.3
610,640 + B158DRAFT_0606 0.29 -0.3
610,640 + B158DRAFT_0606 0.29 +0.1
610,648 - B158DRAFT_0606 0.30 -0.8

Or see this region's nucleotide sequence