Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1543

Experiment: m.b. A22 0.04375 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1542 and B158DRAFT_1543 are separated by 6 nucleotidesB158DRAFT_1543 and B158DRAFT_1544 are separated by 162 nucleotidesB158DRAFT_1544 and B158DRAFT_1546 are separated by 308 nucleotides B158DRAFT_1542: B158DRAFT_1542 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,596,968 to 1,599,334 _1542 B158DRAFT_1543: B158DRAFT_1543 - Multidrug resistance efflux pump, at 1,599,341 to 1,600,543 _1543 B158DRAFT_1544: B158DRAFT_1544 - tRNA_Arg_ACG, at 1,600,706 to 1,600,782 _1544 B158DRAFT_1546: B158DRAFT_1546 - hypothetical protein, at 1,601,091 to 1,601,315 _1546 Position (kb) 1599 1600 1601Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1598.381 kb on + strand, within B158DRAFT_1542at 1598.389 kb on - strand, within B158DRAFT_1542at 1598.389 kb on - strand, within B158DRAFT_1542at 1598.439 kb on - strand, within B158DRAFT_1542at 1598.571 kb on + strand, within B158DRAFT_1542at 1598.574 kb on - strand, within B158DRAFT_1542at 1598.574 kb on - strand, within B158DRAFT_1542at 1598.579 kb on - strand, within B158DRAFT_1542at 1598.588 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.602 kb on + strand, within B158DRAFT_1542at 1598.609 kb on - strand, within B158DRAFT_1542at 1598.610 kb on - strand, within B158DRAFT_1542at 1598.610 kb on - strand, within B158DRAFT_1542at 1598.610 kb on - strand, within B158DRAFT_1542at 1598.610 kb on - strand, within B158DRAFT_1542at 1598.628 kb on - strand, within B158DRAFT_1542at 1598.690 kb on - strand, within B158DRAFT_1542at 1598.809 kb on - strand, within B158DRAFT_1542at 1598.842 kb on + strand, within B158DRAFT_1542at 1598.852 kb on + strand, within B158DRAFT_1542at 1598.852 kb on + strand, within B158DRAFT_1542at 1598.852 kb on + strand, within B158DRAFT_1542at 1598.860 kb on - strand, within B158DRAFT_1542at 1598.860 kb on - strand, within B158DRAFT_1542at 1598.860 kb on - strand, within B158DRAFT_1542at 1598.890 kb on + strand, within B158DRAFT_1542at 1598.975 kb on - strand, within B158DRAFT_1542at 1599.027 kb on + strand, within B158DRAFT_1542at 1599.027 kb on + strand, within B158DRAFT_1542at 1599.032 kb on + strand, within B158DRAFT_1542at 1599.035 kb on - strand, within B158DRAFT_1542at 1599.067 kb on + strand, within B158DRAFT_1542at 1599.103 kb on - strandat 1599.124 kb on + strandat 1599.125 kb on + strandat 1599.125 kb on + strandat 1599.133 kb on - strandat 1599.133 kb on - strandat 1599.149 kb on + strandat 1599.221 kb on + strandat 1599.221 kb on + strandat 1599.222 kb on + strandat 1599.297 kb on + strandat 1599.305 kb on - strandat 1599.314 kb on + strandat 1599.314 kb on + strandat 1599.316 kb on + strandat 1599.337 kb on + strandat 1599.557 kb on - strand, within B158DRAFT_1543at 1599.563 kb on - strand, within B158DRAFT_1543at 1599.563 kb on - strand, within B158DRAFT_1543at 1599.567 kb on - strand, within B158DRAFT_1543at 1599.627 kb on + strand, within B158DRAFT_1543at 1599.627 kb on + strand, within B158DRAFT_1543at 1599.627 kb on + strand, within B158DRAFT_1543at 1599.635 kb on - strand, within B158DRAFT_1543at 1599.642 kb on + strand, within B158DRAFT_1543at 1599.652 kb on + strand, within B158DRAFT_1543at 1599.674 kb on + strand, within B158DRAFT_1543at 1599.682 kb on - strand, within B158DRAFT_1543at 1599.682 kb on - strand, within B158DRAFT_1543at 1599.682 kb on - strand, within B158DRAFT_1543at 1599.682 kb on - strand, within B158DRAFT_1543at 1599.686 kb on - strand, within B158DRAFT_1543at 1599.757 kb on + strand, within B158DRAFT_1543at 1599.799 kb on + strand, within B158DRAFT_1543at 1599.881 kb on + strand, within B158DRAFT_1543at 1599.889 kb on - strand, within B158DRAFT_1543at 1599.891 kb on - strand, within B158DRAFT_1543at 1599.893 kb on + strand, within B158DRAFT_1543at 1599.939 kb on - strand, within B158DRAFT_1543at 1599.956 kb on - strand, within B158DRAFT_1543at 1599.977 kb on + strand, within B158DRAFT_1543at 1599.985 kb on - strand, within B158DRAFT_1543at 1599.991 kb on - strand, within B158DRAFT_1543at 1599.999 kb on + strand, within B158DRAFT_1543at 1600.009 kb on + strand, within B158DRAFT_1543at 1600.009 kb on + strand, within B158DRAFT_1543at 1600.009 kb on + strand, within B158DRAFT_1543at 1600.017 kb on - strand, within B158DRAFT_1543at 1600.017 kb on - strand, within B158DRAFT_1543at 1600.127 kb on + strand, within B158DRAFT_1543at 1600.145 kb on + strand, within B158DRAFT_1543at 1600.172 kb on - strand, within B158DRAFT_1543at 1600.199 kb on + strand, within B158DRAFT_1543at 1600.229 kb on - strand, within B158DRAFT_1543at 1600.229 kb on - strand, within B158DRAFT_1543at 1600.238 kb on + strand, within B158DRAFT_1543at 1600.248 kb on + strand, within B158DRAFT_1543at 1600.248 kb on + strand, within B158DRAFT_1543at 1600.250 kb on + strand, within B158DRAFT_1543at 1600.256 kb on - strand, within B158DRAFT_1543at 1600.256 kb on - strand, within B158DRAFT_1543at 1600.321 kb on - strand, within B158DRAFT_1543at 1600.334 kb on - strand, within B158DRAFT_1543at 1600.385 kb on + strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.391 kb on - strand, within B158DRAFT_1543at 1600.393 kb on - strand, within B158DRAFT_1543at 1600.411 kb on - strand, within B158DRAFT_1543at 1600.413 kb on + strand, within B158DRAFT_1543at 1600.420 kb on + strand, within B158DRAFT_1543at 1600.421 kb on - strand, within B158DRAFT_1543at 1600.421 kb on - strand, within B158DRAFT_1543at 1600.461 kb on + strandat 1600.461 kb on + strandat 1600.469 kb on - strandat 1600.833 kb on + strandat 1600.840 kb on - strandat 1601.009 kb on - strandat 1601.009 kb on - strandat 1601.057 kb on - strandat 1601.067 kb on - strandat 1601.087 kb on - strandat 1601.283 kb on - strand, within B158DRAFT_1546at 1601.338 kb on + strandat 1601.340 kb on - strandat 1601.415 kb on - strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.419 kb on + strandat 1601.427 kb on - strandat 1601.454 kb on + strandat 1601.462 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04375 mg/ml
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1,598,381 + B158DRAFT_1542 0.60 +0.2
1,598,389 - B158DRAFT_1542 0.60 -0.0
1,598,389 - B158DRAFT_1542 0.60 -0.0
1,598,439 - B158DRAFT_1542 0.62 +0.2
1,598,571 + B158DRAFT_1542 0.68 +0.2
1,598,574 - B158DRAFT_1542 0.68 +0.1
1,598,574 - B158DRAFT_1542 0.68 -0.0
1,598,579 - B158DRAFT_1542 0.68 -0.0
1,598,588 + B158DRAFT_1542 0.68 -0.3
1,598,602 + B158DRAFT_1542 0.69 -0.6
1,598,602 + B158DRAFT_1542 0.69 +0.0
1,598,602 + B158DRAFT_1542 0.69 -0.4
1,598,602 + B158DRAFT_1542 0.69 +0.2
1,598,602 + B158DRAFT_1542 0.69 -0.2
1,598,602 + B158DRAFT_1542 0.69 -0.1
1,598,602 + B158DRAFT_1542 0.69 -0.2
1,598,602 + B158DRAFT_1542 0.69 -0.9
1,598,609 - B158DRAFT_1542 0.69 -1.0
1,598,610 - B158DRAFT_1542 0.69 +1.0
1,598,610 - B158DRAFT_1542 0.69 -0.2
1,598,610 - B158DRAFT_1542 0.69 +0.0
1,598,610 - B158DRAFT_1542 0.69 +0.3
1,598,628 - B158DRAFT_1542 0.70 +0.4
1,598,690 - B158DRAFT_1542 0.73 -0.7
1,598,809 - B158DRAFT_1542 0.78 +0.0
1,598,842 + B158DRAFT_1542 0.79 -0.1
1,598,852 + B158DRAFT_1542 0.80 +0.2
1,598,852 + B158DRAFT_1542 0.80 +0.1
1,598,852 + B158DRAFT_1542 0.80 +0.5
1,598,860 - B158DRAFT_1542 0.80 -0.4
1,598,860 - B158DRAFT_1542 0.80 -4.3
1,598,860 - B158DRAFT_1542 0.80 +0.0
1,598,890 + B158DRAFT_1542 0.81 +0.4
1,598,975 - B158DRAFT_1542 0.85 -0.3
1,599,027 + B158DRAFT_1542 0.87 +0.7
1,599,027 + B158DRAFT_1542 0.87 -0.5
1,599,032 + B158DRAFT_1542 0.87 -0.3
1,599,035 - B158DRAFT_1542 0.87 -0.1
1,599,067 + B158DRAFT_1542 0.89 +0.1
1,599,103 - -0.3
1,599,124 + +0.3
1,599,125 + -0.2
1,599,125 + -0.0
1,599,133 - +0.1
1,599,133 - +0.0
1,599,149 + +0.1
1,599,221 + -0.4
1,599,221 + -0.5
1,599,222 + +0.1
1,599,297 + -0.2
1,599,305 - -0.3
1,599,314 + -0.4
1,599,314 + -0.4
1,599,316 + -0.1
1,599,337 + -0.3
1,599,557 - B158DRAFT_1543 0.18 -0.2
1,599,563 - B158DRAFT_1543 0.18 -0.4
1,599,563 - B158DRAFT_1543 0.18 -0.1
1,599,567 - B158DRAFT_1543 0.19 +0.2
1,599,627 + B158DRAFT_1543 0.24 +0.4
1,599,627 + B158DRAFT_1543 0.24 -0.1
1,599,627 + B158DRAFT_1543 0.24 +0.0
1,599,635 - B158DRAFT_1543 0.24 -0.1
1,599,642 + B158DRAFT_1543 0.25 +0.0
1,599,652 + B158DRAFT_1543 0.26 -0.2
1,599,674 + B158DRAFT_1543 0.28 +0.2
1,599,682 - B158DRAFT_1543 0.28 -1.1
1,599,682 - B158DRAFT_1543 0.28 -0.0
1,599,682 - B158DRAFT_1543 0.28 -1.0
1,599,682 - B158DRAFT_1543 0.28 +0.4
1,599,686 - B158DRAFT_1543 0.29 -0.3
1,599,757 + B158DRAFT_1543 0.35 -0.1
1,599,799 + B158DRAFT_1543 0.38 +0.1
1,599,881 + B158DRAFT_1543 0.45 -0.3
1,599,889 - B158DRAFT_1543 0.46 -0.1
1,599,891 - B158DRAFT_1543 0.46 -0.5
1,599,893 + B158DRAFT_1543 0.46 -0.2
1,599,939 - B158DRAFT_1543 0.50 -0.5
1,599,956 - B158DRAFT_1543 0.51 -0.2
1,599,977 + B158DRAFT_1543 0.53 +0.1
1,599,985 - B158DRAFT_1543 0.54 -0.1
1,599,991 - B158DRAFT_1543 0.54 -0.7
1,599,999 + B158DRAFT_1543 0.55 +0.1
1,600,009 + B158DRAFT_1543 0.56 -0.6
1,600,009 + B158DRAFT_1543 0.56 -0.1
1,600,009 + B158DRAFT_1543 0.56 -0.1
1,600,017 - B158DRAFT_1543 0.56 +0.6
1,600,017 - B158DRAFT_1543 0.56 +0.1
1,600,127 + B158DRAFT_1543 0.65 -1.0
1,600,145 + B158DRAFT_1543 0.67 -2.2
1,600,172 - B158DRAFT_1543 0.69 +0.4
1,600,199 + B158DRAFT_1543 0.71 +1.0
1,600,229 - B158DRAFT_1543 0.74 -0.3
1,600,229 - B158DRAFT_1543 0.74 -0.4
1,600,238 + B158DRAFT_1543 0.75 +0.1
1,600,248 + B158DRAFT_1543 0.75 +0.4
1,600,248 + B158DRAFT_1543 0.75 +2.4
1,600,250 + B158DRAFT_1543 0.76 -0.3
1,600,256 - B158DRAFT_1543 0.76 +0.1
1,600,256 - B158DRAFT_1543 0.76 +1.5
1,600,321 - B158DRAFT_1543 0.81 +0.4
1,600,334 - B158DRAFT_1543 0.83 -0.3
1,600,385 + B158DRAFT_1543 0.87 +0.1
1,600,391 - B158DRAFT_1543 0.87 +0.5
1,600,391 - B158DRAFT_1543 0.87 -0.4
1,600,391 - B158DRAFT_1543 0.87 +0.4
1,600,393 - B158DRAFT_1543 0.87 +0.2
1,600,411 - B158DRAFT_1543 0.89 -1.1
1,600,413 + B158DRAFT_1543 0.89 +0.3
1,600,420 + B158DRAFT_1543 0.90 -0.0
1,600,421 - B158DRAFT_1543 0.90 -0.1
1,600,421 - B158DRAFT_1543 0.90 +0.1
1,600,461 + -0.2
1,600,461 + -0.1
1,600,469 - +0.6
1,600,833 + -0.1
1,600,840 - +0.2
1,601,009 - -0.2
1,601,009 - +0.4
1,601,057 - -0.2
1,601,067 - -0.3
1,601,087 - -0.4
1,601,283 - B158DRAFT_1546 0.85 -0.0
1,601,338 + +0.5
1,601,340 - +0.3
1,601,415 - +0.3
1,601,419 + -0.2
1,601,419 + -0.1
1,601,419 + -0.2
1,601,419 + +0.3
1,601,427 - -0.2
1,601,454 + +0.1
1,601,462 - -0.3

Or see this region's nucleotide sequence