Experiment: m.b. A22 0.04375 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1322 and B158DRAFT_1323 are separated by 23 nucleotides B158DRAFT_1323 and B158DRAFT_1324 overlap by 1 nucleotides B158DRAFT_1324 and B158DRAFT_1325 are separated by 55 nucleotides
B158DRAFT_1322: B158DRAFT_1322 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 1,365,842 to 1,366,918
_1322
B158DRAFT_1323: B158DRAFT_1323 - heme ABC exporter, ATP-binding protein CcmA, at 1,366,942 to 1,367,568
_1323
B158DRAFT_1324: B158DRAFT_1324 - heme exporter protein CcmB, at 1,367,568 to 1,368,239
_1324
B158DRAFT_1325: B158DRAFT_1325 - heme exporter protein CcmC, at 1,368,295 to 1,369,068
_1325
Position (kb)
1366
1367
1368 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1365.951 kb on - strand, within B158DRAFT_1322 at 1365.981 kb on + strand, within B158DRAFT_1322 at 1366.000 kb on + strand, within B158DRAFT_1322 at 1366.054 kb on - strand, within B158DRAFT_1322 at 1366.151 kb on + strand, within B158DRAFT_1322 at 1366.178 kb on + strand, within B158DRAFT_1322 at 1366.220 kb on + strand, within B158DRAFT_1322 at 1366.294 kb on + strand, within B158DRAFT_1322 at 1366.496 kb on + strand, within B158DRAFT_1322 at 1366.518 kb on - strand, within B158DRAFT_1322 at 1366.539 kb on + strand, within B158DRAFT_1322 at 1366.539 kb on + strand, within B158DRAFT_1322 at 1366.549 kb on - strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.657 kb on + strand, within B158DRAFT_1322 at 1366.663 kb on + strand, within B158DRAFT_1322 at 1366.663 kb on + strand, within B158DRAFT_1322 at 1366.663 kb on + strand, within B158DRAFT_1322 at 1366.665 kb on - strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.679 kb on + strand, within B158DRAFT_1322 at 1366.714 kb on - strand, within B158DRAFT_1322 at 1366.719 kb on - strand, within B158DRAFT_1322 at 1366.731 kb on + strand, within B158DRAFT_1322 at 1366.846 kb on + strand at 1366.846 kb on + strand at 1366.846 kb on + strand at 1366.846 kb on + strand at 1366.846 kb on + strand at 1366.846 kb on + strand at 1366.854 kb on - strand at 1366.854 kb on - strand at 1366.969 kb on + strand at 1366.969 kb on + strand at 1367.014 kb on + strand, within B158DRAFT_1323 at 1367.068 kb on + strand, within B158DRAFT_1323 at 1367.076 kb on - strand, within B158DRAFT_1323 at 1367.111 kb on - strand, within B158DRAFT_1323 at 1367.271 kb on + strand, within B158DRAFT_1323 at 1367.296 kb on + strand, within B158DRAFT_1323 at 1367.296 kb on + strand, within B158DRAFT_1323 at 1367.304 kb on - strand, within B158DRAFT_1323 at 1367.327 kb on - strand, within B158DRAFT_1323 at 1367.369 kb on - strand, within B158DRAFT_1323 at 1367.495 kb on + strand, within B158DRAFT_1323 at 1367.562 kb on + strand at 1367.582 kb on + strand at 1367.582 kb on + strand at 1367.678 kb on + strand, within B158DRAFT_1324 at 1367.683 kb on + strand, within B158DRAFT_1324 at 1367.691 kb on - strand, within B158DRAFT_1324 at 1367.691 kb on - strand, within B158DRAFT_1324 at 1367.736 kb on + strand, within B158DRAFT_1324 at 1367.736 kb on + strand, within B158DRAFT_1324 at 1367.741 kb on + strand, within B158DRAFT_1324 at 1367.741 kb on + strand, within B158DRAFT_1324 at 1367.741 kb on + strand, within B158DRAFT_1324 at 1367.749 kb on - strand, within B158DRAFT_1324 at 1367.810 kb on - strand, within B158DRAFT_1324 at 1367.810 kb on - strand, within B158DRAFT_1324 at 1367.975 kb on + strand, within B158DRAFT_1324 at 1367.983 kb on - strand, within B158DRAFT_1324 at 1367.986 kb on + strand, within B158DRAFT_1324 at 1367.986 kb on - strand, within B158DRAFT_1324 at 1367.986 kb on - strand, within B158DRAFT_1324 at 1368.023 kb on - strand, within B158DRAFT_1324 at 1368.198 kb on - strand at 1368.414 kb on + strand, within B158DRAFT_1325 at 1368.422 kb on - strand, within B158DRAFT_1325 at 1368.448 kb on + strand, within B158DRAFT_1325
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04375 mg/ml remove 1,365,951 - B158DRAFT_1322 0.10 -0.6 1,365,981 + B158DRAFT_1322 0.13 +0.1 1,366,000 + B158DRAFT_1322 0.15 -1.0 1,366,054 - B158DRAFT_1322 0.20 +0.6 1,366,151 + B158DRAFT_1322 0.29 -0.7 1,366,178 + B158DRAFT_1322 0.31 +0.1 1,366,220 + B158DRAFT_1322 0.35 +0.4 1,366,294 + B158DRAFT_1322 0.42 +0.3 1,366,496 + B158DRAFT_1322 0.61 +0.2 1,366,518 - B158DRAFT_1322 0.63 +1.2 1,366,539 + B158DRAFT_1322 0.65 +0.3 1,366,539 + B158DRAFT_1322 0.65 +0.3 1,366,549 - B158DRAFT_1322 0.66 +0.3 1,366,657 + B158DRAFT_1322 0.76 -0.4 1,366,657 + B158DRAFT_1322 0.76 +0.0 1,366,657 + B158DRAFT_1322 0.76 -0.4 1,366,657 + B158DRAFT_1322 0.76 -0.2 1,366,663 + B158DRAFT_1322 0.76 -0.1 1,366,663 + B158DRAFT_1322 0.76 +0.2 1,366,663 + B158DRAFT_1322 0.76 +0.1 1,366,665 - B158DRAFT_1322 0.76 +0.8 1,366,679 + B158DRAFT_1322 0.78 -0.5 1,366,679 + B158DRAFT_1322 0.78 +1.0 1,366,679 + B158DRAFT_1322 0.78 -0.2 1,366,679 + B158DRAFT_1322 0.78 -0.2 1,366,714 - B158DRAFT_1322 0.81 -3.3 1,366,719 - B158DRAFT_1322 0.81 +0.3 1,366,731 + B158DRAFT_1322 0.83 -0.1 1,366,846 + -0.5 1,366,846 + +0.2 1,366,846 + -0.5 1,366,846 + +0.1 1,366,846 + -0.5 1,366,846 + -0.3 1,366,854 - -2.2 1,366,854 - -3.5 1,366,969 + -2.5 1,366,969 + -1.5 1,367,014 + B158DRAFT_1323 0.11 -2.8 1,367,068 + B158DRAFT_1323 0.20 -1.2 1,367,076 - B158DRAFT_1323 0.21 -4.8 1,367,111 - B158DRAFT_1323 0.27 -1.9 1,367,271 + B158DRAFT_1323 0.52 -3.2 1,367,296 + B158DRAFT_1323 0.56 +0.4 1,367,296 + B158DRAFT_1323 0.56 -3.0 1,367,304 - B158DRAFT_1323 0.58 -2.2 1,367,327 - B158DRAFT_1323 0.61 -2.5 1,367,369 - B158DRAFT_1323 0.68 -3.6 1,367,495 + B158DRAFT_1323 0.88 -2.7 1,367,562 + -0.1 1,367,582 + -1.6 1,367,582 + -1.4 1,367,678 + B158DRAFT_1324 0.16 -2.5 1,367,683 + B158DRAFT_1324 0.17 -3.6 1,367,691 - B158DRAFT_1324 0.18 -1.8 1,367,691 - B158DRAFT_1324 0.18 -0.8 1,367,736 + B158DRAFT_1324 0.25 -1.0 1,367,736 + B158DRAFT_1324 0.25 -3.0 1,367,741 + B158DRAFT_1324 0.26 -3.7 1,367,741 + B158DRAFT_1324 0.26 -4.2 1,367,741 + B158DRAFT_1324 0.26 -2.8 1,367,749 - B158DRAFT_1324 0.27 -2.0 1,367,810 - B158DRAFT_1324 0.36 -1.5 1,367,810 - B158DRAFT_1324 0.36 -2.7 1,367,975 + B158DRAFT_1324 0.61 -2.5 1,367,983 - B158DRAFT_1324 0.62 -1.6 1,367,986 + B158DRAFT_1324 0.62 -3.3 1,367,986 - B158DRAFT_1324 0.62 -3.5 1,367,986 - B158DRAFT_1324 0.62 -2.9 1,368,023 - B158DRAFT_1324 0.68 -5.1 1,368,198 - -3.0 1,368,414 + B158DRAFT_1325 0.15 -2.2 1,368,422 - B158DRAFT_1325 0.16 -2.5 1,368,448 + B158DRAFT_1325 0.20 -1.5
Or see this region's nucleotide sequence