Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2240

Experiment: m.b. Cephalothin 0.009765625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2239 and B158DRAFT_2240 are separated by 50 nucleotidesB158DRAFT_2240 and B158DRAFT_2241 are separated by 148 nucleotides B158DRAFT_2239: B158DRAFT_2239 - peptide chain release factor 3, at 395,659 to 397,248 _2239 B158DRAFT_2240: B158DRAFT_2240 - Mg-dependent DNase, at 397,299 to 398,096 _2240 B158DRAFT_2241: B158DRAFT_2241 - Outer membrane cobalamin receptor protein, at 398,245 to 401,133 _2241 Position (kb) 397 398 399Strain fitness (log2 ratio) -2 -1 0 1at 396.346 kb on + strand, within B158DRAFT_2239at 396.357 kb on + strand, within B158DRAFT_2239at 396.474 kb on + strand, within B158DRAFT_2239at 396.482 kb on - strand, within B158DRAFT_2239at 396.493 kb on + strand, within B158DRAFT_2239at 396.501 kb on - strand, within B158DRAFT_2239at 396.516 kb on - strand, within B158DRAFT_2239at 396.517 kb on + strand, within B158DRAFT_2239at 396.521 kb on + strand, within B158DRAFT_2239at 396.524 kb on - strand, within B158DRAFT_2239at 396.524 kb on - strand, within B158DRAFT_2239at 396.589 kb on - strand, within B158DRAFT_2239at 396.641 kb on - strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.731 kb on - strand, within B158DRAFT_2239at 396.742 kb on + strand, within B158DRAFT_2239at 396.816 kb on + strand, within B158DRAFT_2239at 396.816 kb on + strand, within B158DRAFT_2239at 396.824 kb on - strand, within B158DRAFT_2239at 396.844 kb on + strand, within B158DRAFT_2239at 396.874 kb on + strand, within B158DRAFT_2239at 396.931 kb on + strand, within B158DRAFT_2239at 396.944 kb on - strand, within B158DRAFT_2239at 396.975 kb on - strand, within B158DRAFT_2239at 396.993 kb on - strand, within B158DRAFT_2239at 397.000 kb on - strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.081 kb on - strand, within B158DRAFT_2239at 397.084 kb on - strand, within B158DRAFT_2239at 397.100 kb on + strandat 397.108 kb on - strandat 397.138 kb on + strandat 397.146 kb on - strandat 397.155 kb on + strandat 397.155 kb on + strandat 397.209 kb on - strandat 397.211 kb on + strandat 397.211 kb on + strandat 397.219 kb on - strandat 397.219 kb on - strandat 397.219 kb on - strandat 397.266 kb on - strandat 397.283 kb on + strandat 397.291 kb on - strandat 397.309 kb on - strandat 397.309 kb on - strandat 397.313 kb on + strandat 397.361 kb on - strandat 397.361 kb on - strandat 397.361 kb on - strandat 397.379 kb on + strand, within B158DRAFT_2240at 397.400 kb on - strand, within B158DRAFT_2240at 397.451 kb on + strand, within B158DRAFT_2240at 397.628 kb on + strand, within B158DRAFT_2240at 397.683 kb on + strand, within B158DRAFT_2240at 397.755 kb on + strand, within B158DRAFT_2240at 397.763 kb on - strand, within B158DRAFT_2240at 397.763 kb on - strand, within B158DRAFT_2240at 397.809 kb on - strand, within B158DRAFT_2240at 397.811 kb on + strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.856 kb on + strand, within B158DRAFT_2240at 397.856 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.884 kb on - strand, within B158DRAFT_2240at 397.952 kb on - strand, within B158DRAFT_2240at 397.983 kb on + strand, within B158DRAFT_2240at 397.991 kb on - strand, within B158DRAFT_2240at 397.991 kb on - strand, within B158DRAFT_2240at 398.078 kb on + strandat 398.156 kb on - strandat 398.156 kb on - strandat 398.185 kb on + strandat 398.294 kb on + strandat 398.294 kb on + strandat 398.294 kb on + strandat 398.302 kb on - strandat 398.302 kb on - strandat 398.302 kb on - strandat 398.302 kb on - strandat 398.391 kb on + strandat 398.397 kb on + strandat 398.397 kb on + strandat 398.397 kb on + strandat 398.405 kb on - strandat 398.414 kb on - strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.422 kb on + strandat 398.430 kb on - strandat 398.430 kb on - strandat 398.430 kb on - strandat 398.454 kb on + strandat 398.462 kb on - strandat 398.535 kb on + strand, within B158DRAFT_2241at 398.555 kb on + strand, within B158DRAFT_2241at 398.578 kb on + strand, within B158DRAFT_2241at 398.578 kb on + strand, within B158DRAFT_2241at 398.618 kb on - strand, within B158DRAFT_2241at 398.623 kb on - strand, within B158DRAFT_2241at 398.667 kb on - strand, within B158DRAFT_2241at 398.670 kb on + strand, within B158DRAFT_2241at 398.764 kb on - strand, within B158DRAFT_2241at 398.792 kb on + strand, within B158DRAFT_2241at 398.794 kb on + strand, within B158DRAFT_2241at 398.800 kb on + strand, within B158DRAFT_2241at 398.809 kb on + strand, within B158DRAFT_2241at 398.817 kb on - strand, within B158DRAFT_2241at 398.855 kb on - strand, within B158DRAFT_2241at 398.964 kb on + strand, within B158DRAFT_2241at 398.992 kb on + strand, within B158DRAFT_2241at 399.003 kb on + strand, within B158DRAFT_2241at 399.007 kb on + strand, within B158DRAFT_2241at 399.019 kb on + strand, within B158DRAFT_2241at 399.019 kb on + strand, within B158DRAFT_2241at 399.058 kb on + strand, within B158DRAFT_2241

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.009765625 mg/ml
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396,346 + B158DRAFT_2239 0.43 +0.2
396,357 + B158DRAFT_2239 0.44 +0.3
396,474 + B158DRAFT_2239 0.51 +0.9
396,482 - B158DRAFT_2239 0.52 +0.1
396,493 + B158DRAFT_2239 0.52 -0.1
396,501 - B158DRAFT_2239 0.53 +0.5
396,516 - B158DRAFT_2239 0.54 -0.1
396,517 + B158DRAFT_2239 0.54 -0.1
396,521 + B158DRAFT_2239 0.54 -0.5
396,524 - B158DRAFT_2239 0.54 +0.3
396,524 - B158DRAFT_2239 0.54 +0.8
396,589 - B158DRAFT_2239 0.58 -0.1
396,641 - B158DRAFT_2239 0.62 -0.2
396,691 + B158DRAFT_2239 0.65 +0.6
396,691 + B158DRAFT_2239 0.65 +0.1
396,691 + B158DRAFT_2239 0.65 -0.4
396,691 + B158DRAFT_2239 0.65 +0.0
396,699 - B158DRAFT_2239 0.65 +0.1
396,699 - B158DRAFT_2239 0.65 +0.5
396,699 - B158DRAFT_2239 0.65 -0.5
396,731 - B158DRAFT_2239 0.67 +0.1
396,742 + B158DRAFT_2239 0.68 +0.4
396,816 + B158DRAFT_2239 0.73 -0.2
396,816 + B158DRAFT_2239 0.73 -0.2
396,824 - B158DRAFT_2239 0.73 +0.3
396,844 + B158DRAFT_2239 0.75 -0.4
396,874 + B158DRAFT_2239 0.76 -0.5
396,931 + B158DRAFT_2239 0.80 +0.1
396,944 - B158DRAFT_2239 0.81 -0.7
396,975 - B158DRAFT_2239 0.83 +0.2
396,993 - B158DRAFT_2239 0.84 +0.3
397,000 - B158DRAFT_2239 0.84 +0.9
397,076 + B158DRAFT_2239 0.89 -0.5
397,076 + B158DRAFT_2239 0.89 +0.2
397,076 + B158DRAFT_2239 0.89 +0.2
397,076 + B158DRAFT_2239 0.89 -0.8
397,081 - B158DRAFT_2239 0.89 +0.5
397,084 - B158DRAFT_2239 0.90 -0.2
397,100 + +0.3
397,108 - +0.1
397,138 + -0.3
397,146 - -2.4
397,155 + -0.0
397,155 + -0.2
397,209 - -0.3
397,211 + +0.5
397,211 + -0.3
397,219 - -0.2
397,219 - +0.3
397,219 - +0.1
397,266 - -0.3
397,283 + -0.4
397,291 - +0.0
397,309 - -1.0
397,309 - -1.0
397,313 + +0.8
397,361 - -0.1
397,361 - -0.3
397,361 - -0.1
397,379 + B158DRAFT_2240 0.10 +0.4
397,400 - B158DRAFT_2240 0.13 +0.9
397,451 + B158DRAFT_2240 0.19 -0.4
397,628 + B158DRAFT_2240 0.41 -0.2
397,683 + B158DRAFT_2240 0.48 -0.4
397,755 + B158DRAFT_2240 0.57 +0.5
397,763 - B158DRAFT_2240 0.58 +0.2
397,763 - B158DRAFT_2240 0.58 +0.3
397,809 - B158DRAFT_2240 0.64 -0.3
397,811 + B158DRAFT_2240 0.64 -0.0
397,819 - B158DRAFT_2240 0.65 +0.1
397,819 - B158DRAFT_2240 0.65 +0.5
397,819 - B158DRAFT_2240 0.65 +0.0
397,856 + B158DRAFT_2240 0.70 +0.1
397,856 + B158DRAFT_2240 0.70 +0.4
397,857 + B158DRAFT_2240 0.70 -0.2
397,857 + B158DRAFT_2240 0.70 -0.1
397,857 + B158DRAFT_2240 0.70 -0.0
397,857 + B158DRAFT_2240 0.70 +0.6
397,857 + B158DRAFT_2240 0.70 -0.3
397,857 + B158DRAFT_2240 0.70 -0.4
397,857 + B158DRAFT_2240 0.70 -0.8
397,864 - B158DRAFT_2240 0.71 -1.4
397,864 - B158DRAFT_2240 0.71 +0.9
397,864 - B158DRAFT_2240 0.71 -0.7
397,865 - B158DRAFT_2240 0.71 -0.1
397,865 - B158DRAFT_2240 0.71 +0.0
397,865 - B158DRAFT_2240 0.71 -0.2
397,865 - B158DRAFT_2240 0.71 +0.1
397,876 + B158DRAFT_2240 0.72 -0.0
397,876 + B158DRAFT_2240 0.72 +0.1
397,876 + B158DRAFT_2240 0.72 +0.1
397,876 + B158DRAFT_2240 0.72 -0.1
397,884 - B158DRAFT_2240 0.73 +0.3
397,952 - B158DRAFT_2240 0.82 +0.2
397,983 + B158DRAFT_2240 0.86 -0.2
397,991 - B158DRAFT_2240 0.87 -0.0
397,991 - B158DRAFT_2240 0.87 +0.6
398,078 + +0.1
398,156 - +0.3
398,156 - -0.0
398,185 + -0.3
398,294 + -0.0
398,294 + -0.1
398,294 + -0.3
398,302 - -0.3
398,302 - -0.4
398,302 - -2.2
398,302 - -0.1
398,391 + +0.7
398,397 + -0.6
398,397 + -0.5
398,397 + -0.6
398,405 - -0.1
398,414 - -0.3
398,422 + +0.2
398,422 + -0.5
398,422 + +0.3
398,422 + -0.2
398,422 + -0.5
398,422 + -0.1
398,422 + -0.5
398,430 - -0.0
398,430 - +0.2
398,430 - -0.2
398,454 + +0.1
398,462 - +0.5
398,535 + B158DRAFT_2241 0.10 -0.4
398,555 + B158DRAFT_2241 0.11 -0.0
398,578 + B158DRAFT_2241 0.12 +0.2
398,578 + B158DRAFT_2241 0.12 -0.6
398,618 - B158DRAFT_2241 0.13 -0.0
398,623 - B158DRAFT_2241 0.13 -0.1
398,667 - B158DRAFT_2241 0.15 -0.5
398,670 + B158DRAFT_2241 0.15 +0.6
398,764 - B158DRAFT_2241 0.18 -0.1
398,792 + B158DRAFT_2241 0.19 -0.4
398,794 + B158DRAFT_2241 0.19 -0.4
398,800 + B158DRAFT_2241 0.19 -1.7
398,809 + B158DRAFT_2241 0.20 -0.3
398,817 - B158DRAFT_2241 0.20 -0.2
398,855 - B158DRAFT_2241 0.21 -0.7
398,964 + B158DRAFT_2241 0.25 -0.2
398,992 + B158DRAFT_2241 0.26 +0.0
399,003 + B158DRAFT_2241 0.26 -0.5
399,007 + B158DRAFT_2241 0.26 -0.6
399,019 + B158DRAFT_2241 0.27 -0.4
399,019 + B158DRAFT_2241 0.27 -0.0
399,058 + B158DRAFT_2241 0.28 -2.0

Or see this region's nucleotide sequence