Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2116

Experiment: m.b. Vanillin 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2114 and B158DRAFT_2115 overlap by 4 nucleotidesB158DRAFT_2115 and B158DRAFT_2116 overlap by 1 nucleotidesB158DRAFT_2116 and B158DRAFT_2117 overlap by 8 nucleotides B158DRAFT_2114: B158DRAFT_2114 - S-adenosyl-methyltransferase MraW, at 245,726 to 246,661 _2114 B158DRAFT_2115: B158DRAFT_2115 - cell division protein FtsL, at 246,658 to 247,014 _2115 B158DRAFT_2116: B158DRAFT_2116 - Cell division protein FtsI/penicillin-binding protein 2, at 247,014 to 248,771 _2116 B158DRAFT_2117: B158DRAFT_2117 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13), at 248,764 to 250,350 _2117 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1at 246.147 kb on + strand, within B158DRAFT_2114at 246.342 kb on + strand, within B158DRAFT_2114at 246.342 kb on + strand, within B158DRAFT_2114at 246.369 kb on + strand, within B158DRAFT_2114at 246.396 kb on + strand, within B158DRAFT_2114at 246.407 kb on + strand, within B158DRAFT_2114at 246.590 kb on + strandat 246.652 kb on + strandat 246.723 kb on + strand, within B158DRAFT_2115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2 mM
remove
246,147 + B158DRAFT_2114 0.45 -2.4
246,342 + B158DRAFT_2114 0.66 +0.4
246,342 + B158DRAFT_2114 0.66 -3.2
246,369 + B158DRAFT_2114 0.69 -1.6
246,396 + B158DRAFT_2114 0.72 -0.6
246,407 + B158DRAFT_2114 0.73 -2.0
246,590 + -2.0
246,652 + +0.4
246,723 + B158DRAFT_2115 0.18 -2.4

Or see this region's nucleotide sequence