Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1727

Experiment: m.b. Vanillin 2 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1724 and B158DRAFT_1725 are separated by 13 nucleotidesB158DRAFT_1725 and B158DRAFT_1726 overlap by 1 nucleotidesB158DRAFT_1726 and B158DRAFT_1727 overlap by 1 nucleotidesB158DRAFT_1727 and B158DRAFT_1728 are separated by 221 nucleotidesB158DRAFT_1728 and B158DRAFT_1729 are separated by 102 nucleotides B158DRAFT_1724: B158DRAFT_1724 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 1,799,051 to 1,799,773 _1724 B158DRAFT_1725: B158DRAFT_1725 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 1,799,787 to 1,800,536 _1725 B158DRAFT_1726: B158DRAFT_1726 - hypothetical protein, at 1,800,536 to 1,800,769 _1726 B158DRAFT_1727: B158DRAFT_1727 - ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2), at 1,800,769 to 1,802,808 _1727 B158DRAFT_1728: B158DRAFT_1728 - Uncharacterized conserved protein, at 1,803,030 to 1,803,401 _1728 B158DRAFT_1729: B158DRAFT_1729 - Glutamate decarboxylase and related PLP-dependent proteins, at 1,803,504 to 1,805,483 _1729 Position (kb) 1800 1801 1802 1803Strain fitness (log2 ratio) -1 0 1 2at 1799.805 kb on - strandat 1799.830 kb on + strandat 1799.830 kb on + strandat 1799.893 kb on + strand, within B158DRAFT_1725at 1799.939 kb on - strand, within B158DRAFT_1725at 1799.994 kb on + strand, within B158DRAFT_1725at 1800.048 kb on - strand, within B158DRAFT_1725at 1800.048 kb on - strand, within B158DRAFT_1725at 1800.085 kb on + strand, within B158DRAFT_1725at 1800.093 kb on - strand, within B158DRAFT_1725at 1800.131 kb on + strand, within B158DRAFT_1725at 1800.131 kb on - strand, within B158DRAFT_1725at 1800.139 kb on - strand, within B158DRAFT_1725at 1800.139 kb on - strand, within B158DRAFT_1725at 1800.166 kb on + strand, within B158DRAFT_1725at 1800.182 kb on + strand, within B158DRAFT_1725at 1800.190 kb on - strand, within B158DRAFT_1725at 1800.198 kb on + strand, within B158DRAFT_1725at 1800.198 kb on - strand, within B158DRAFT_1725at 1800.246 kb on + strand, within B158DRAFT_1725at 1800.246 kb on + strand, within B158DRAFT_1725at 1800.246 kb on + strand, within B158DRAFT_1725at 1800.254 kb on - strand, within B158DRAFT_1725at 1800.254 kb on - strand, within B158DRAFT_1725at 1800.260 kb on + strand, within B158DRAFT_1725at 1800.285 kb on - strand, within B158DRAFT_1725at 1800.290 kb on - strand, within B158DRAFT_1725at 1800.304 kb on + strand, within B158DRAFT_1725at 1800.312 kb on - strand, within B158DRAFT_1725at 1800.328 kb on + strand, within B158DRAFT_1725at 1800.362 kb on + strand, within B158DRAFT_1725at 1800.406 kb on + strand, within B158DRAFT_1725at 1800.409 kb on - strand, within B158DRAFT_1725at 1800.419 kb on - strand, within B158DRAFT_1725at 1800.427 kb on + strand, within B158DRAFT_1725at 1800.435 kb on - strand, within B158DRAFT_1725at 1800.435 kb on - strand, within B158DRAFT_1725at 1800.440 kb on - strand, within B158DRAFT_1725at 1800.467 kb on - strandat 1800.474 kb on + strandat 1800.547 kb on + strandat 1800.556 kb on - strandat 1800.596 kb on + strand, within B158DRAFT_1726at 1800.596 kb on + strand, within B158DRAFT_1726at 1800.693 kb on + strand, within B158DRAFT_1726at 1800.700 kb on + strand, within B158DRAFT_1726at 1800.708 kb on - strand, within B158DRAFT_1726at 1800.708 kb on - strand, within B158DRAFT_1726at 1800.708 kb on - strand, within B158DRAFT_1726at 1800.790 kb on + strandat 1800.819 kb on - strandat 1800.827 kb on + strandat 1800.862 kb on + strandat 1800.862 kb on + strandat 1800.867 kb on + strandat 1800.867 kb on + strandat 1800.867 kb on + strandat 1800.867 kb on + strandat 1800.870 kb on - strandat 1800.870 kb on - strandat 1800.870 kb on - strandat 1800.977 kb on + strand, within B158DRAFT_1727at 1800.977 kb on + strand, within B158DRAFT_1727at 1800.977 kb on + strand, within B158DRAFT_1727at 1800.977 kb on + strand, within B158DRAFT_1727at 1800.977 kb on + strand, within B158DRAFT_1727at 1800.977 kb on + strand, within B158DRAFT_1727at 1800.985 kb on - strand, within B158DRAFT_1727at 1800.985 kb on - strand, within B158DRAFT_1727at 1800.985 kb on - strand, within B158DRAFT_1727at 1800.985 kb on - strand, within B158DRAFT_1727at 1800.988 kb on + strand, within B158DRAFT_1727at 1800.996 kb on - strand, within B158DRAFT_1727at 1801.085 kb on + strand, within B158DRAFT_1727at 1801.101 kb on - strand, within B158DRAFT_1727at 1801.101 kb on - strand, within B158DRAFT_1727at 1801.116 kb on - strand, within B158DRAFT_1727at 1801.175 kb on - strand, within B158DRAFT_1727at 1801.177 kb on - strand, within B158DRAFT_1727at 1801.199 kb on - strand, within B158DRAFT_1727at 1801.281 kb on - strand, within B158DRAFT_1727at 1801.326 kb on - strand, within B158DRAFT_1727at 1801.394 kb on + strand, within B158DRAFT_1727at 1801.511 kb on + strand, within B158DRAFT_1727at 1801.519 kb on - strand, within B158DRAFT_1727at 1801.528 kb on - strand, within B158DRAFT_1727at 1801.530 kb on + strand, within B158DRAFT_1727at 1801.538 kb on + strand, within B158DRAFT_1727at 1801.567 kb on + strand, within B158DRAFT_1727at 1801.590 kb on + strand, within B158DRAFT_1727at 1801.592 kb on + strand, within B158DRAFT_1727at 1801.792 kb on + strand, within B158DRAFT_1727at 1801.800 kb on - strand, within B158DRAFT_1727at 1801.937 kb on + strand, within B158DRAFT_1727at 1801.945 kb on - strand, within B158DRAFT_1727at 1801.948 kb on + strand, within B158DRAFT_1727at 1801.948 kb on + strand, within B158DRAFT_1727at 1801.948 kb on + strand, within B158DRAFT_1727at 1801.956 kb on - strand, within B158DRAFT_1727at 1801.960 kb on - strand, within B158DRAFT_1727at 1801.985 kb on - strand, within B158DRAFT_1727at 1802.017 kb on + strand, within B158DRAFT_1727at 1802.019 kb on + strand, within B158DRAFT_1727at 1802.025 kb on - strand, within B158DRAFT_1727at 1802.027 kb on - strand, within B158DRAFT_1727at 1802.027 kb on - strand, within B158DRAFT_1727at 1802.176 kb on - strand, within B158DRAFT_1727at 1802.220 kb on - strand, within B158DRAFT_1727at 1802.220 kb on - strand, within B158DRAFT_1727at 1802.261 kb on + strand, within B158DRAFT_1727at 1802.350 kb on - strand, within B158DRAFT_1727at 1802.409 kb on - strand, within B158DRAFT_1727at 1802.409 kb on - strand, within B158DRAFT_1727at 1802.419 kb on - strand, within B158DRAFT_1727at 1802.431 kb on + strand, within B158DRAFT_1727at 1802.454 kb on - strand, within B158DRAFT_1727at 1802.564 kb on + strand, within B158DRAFT_1727at 1802.589 kb on - strand, within B158DRAFT_1727at 1802.710 kb on - strandat 1802.710 kb on - strandat 1802.780 kb on + strandat 1802.948 kb on + strandat 1802.975 kb on + strandat 1802.990 kb on - strandat 1802.990 kb on - strandat 1803.073 kb on + strand, within B158DRAFT_1728at 1803.081 kb on - strand, within B158DRAFT_1728at 1803.081 kb on - strand, within B158DRAFT_1728at 1803.106 kb on - strand, within B158DRAFT_1728at 1803.226 kb on + strand, within B158DRAFT_1728at 1803.228 kb on + strand, within B158DRAFT_1728at 1803.228 kb on + strand, within B158DRAFT_1728at 1803.228 kb on + strand, within B158DRAFT_1728at 1803.228 kb on + strand, within B158DRAFT_1728at 1803.228 kb on + strand, within B158DRAFT_1728at 1803.236 kb on - strand, within B158DRAFT_1728at 1803.236 kb on - strand, within B158DRAFT_1728at 1803.236 kb on - strand, within B158DRAFT_1728at 1803.236 kb on - strand, within B158DRAFT_1728at 1803.236 kb on - strand, within B158DRAFT_1728at 1803.236 kb on - strand, within B158DRAFT_1728at 1803.236 kb on - strand, within B158DRAFT_1728at 1803.240 kb on + strand, within B158DRAFT_1728at 1803.271 kb on + strand, within B158DRAFT_1728at 1803.273 kb on - strand, within B158DRAFT_1728at 1803.279 kb on - strand, within B158DRAFT_1728at 1803.279 kb on - strand, within B158DRAFT_1728at 1803.279 kb on - strand, within B158DRAFT_1728at 1803.279 kb on - strand, within B158DRAFT_1728at 1803.279 kb on - strand, within B158DRAFT_1728at 1803.279 kb on - strand, within B158DRAFT_1728at 1803.304 kb on + strand, within B158DRAFT_1728at 1803.320 kb on + strand, within B158DRAFT_1728at 1803.467 kb on + strandat 1803.538 kb on - strandat 1803.572 kb on + strandat 1803.572 kb on + strandat 1803.572 kb on + strandat 1803.572 kb on + strandat 1803.580 kb on - strandat 1803.580 kb on - strandat 1803.664 kb on + strandat 1803.672 kb on - strandat 1803.715 kb on - strand, within B158DRAFT_1729at 1803.778 kb on - strand, within B158DRAFT_1729

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2 mM
remove
1,799,805 - -0.5
1,799,830 + -0.0
1,799,830 + -0.5
1,799,893 + B158DRAFT_1725 0.14 +0.4
1,799,939 - B158DRAFT_1725 0.20 -0.0
1,799,994 + B158DRAFT_1725 0.28 -0.4
1,800,048 - B158DRAFT_1725 0.35 -0.2
1,800,048 - B158DRAFT_1725 0.35 -0.7
1,800,085 + B158DRAFT_1725 0.40 -0.2
1,800,093 - B158DRAFT_1725 0.41 -0.2
1,800,131 + B158DRAFT_1725 0.46 -0.2
1,800,131 - B158DRAFT_1725 0.46 +0.1
1,800,139 - B158DRAFT_1725 0.47 -0.0
1,800,139 - B158DRAFT_1725 0.47 +0.1
1,800,166 + B158DRAFT_1725 0.51 -0.1
1,800,182 + B158DRAFT_1725 0.53 -0.2
1,800,190 - B158DRAFT_1725 0.54 +0.2
1,800,198 + B158DRAFT_1725 0.55 -0.1
1,800,198 - B158DRAFT_1725 0.55 -0.2
1,800,246 + B158DRAFT_1725 0.61 -0.0
1,800,246 + B158DRAFT_1725 0.61 +0.1
1,800,246 + B158DRAFT_1725 0.61 -0.2
1,800,254 - B158DRAFT_1725 0.62 -0.1
1,800,254 - B158DRAFT_1725 0.62 -0.1
1,800,260 + B158DRAFT_1725 0.63 -0.2
1,800,285 - B158DRAFT_1725 0.66 -0.5
1,800,290 - B158DRAFT_1725 0.67 +0.3
1,800,304 + B158DRAFT_1725 0.69 +0.2
1,800,312 - B158DRAFT_1725 0.70 -0.1
1,800,328 + B158DRAFT_1725 0.72 +0.1
1,800,362 + B158DRAFT_1725 0.77 -0.1
1,800,406 + B158DRAFT_1725 0.83 +0.1
1,800,409 - B158DRAFT_1725 0.83 -1.7
1,800,419 - B158DRAFT_1725 0.84 +0.3
1,800,427 + B158DRAFT_1725 0.85 -0.7
1,800,435 - B158DRAFT_1725 0.86 +0.2
1,800,435 - B158DRAFT_1725 0.86 -0.3
1,800,440 - B158DRAFT_1725 0.87 -0.2
1,800,467 - -0.3
1,800,474 + +0.1
1,800,547 + -1.4
1,800,556 - -0.4
1,800,596 + B158DRAFT_1726 0.26 -0.6
1,800,596 + B158DRAFT_1726 0.26 -1.3
1,800,693 + B158DRAFT_1726 0.67 +0.2
1,800,700 + B158DRAFT_1726 0.70 -0.5
1,800,708 - B158DRAFT_1726 0.74 +0.3
1,800,708 - B158DRAFT_1726 0.74 -0.4
1,800,708 - B158DRAFT_1726 0.74 -0.6
1,800,790 + +0.1
1,800,819 - +0.1
1,800,827 + -0.5
1,800,862 + -0.3
1,800,862 + +0.4
1,800,867 + +0.1
1,800,867 + -0.2
1,800,867 + +0.6
1,800,867 + -0.4
1,800,870 - -0.4
1,800,870 - +0.1
1,800,870 - -0.1
1,800,977 + B158DRAFT_1727 0.10 -0.1
1,800,977 + B158DRAFT_1727 0.10 -0.3
1,800,977 + B158DRAFT_1727 0.10 -0.0
1,800,977 + B158DRAFT_1727 0.10 +0.0
1,800,977 + B158DRAFT_1727 0.10 -0.8
1,800,977 + B158DRAFT_1727 0.10 -1.4
1,800,985 - B158DRAFT_1727 0.11 -0.5
1,800,985 - B158DRAFT_1727 0.11 -0.9
1,800,985 - B158DRAFT_1727 0.11 +0.1
1,800,985 - B158DRAFT_1727 0.11 -0.3
1,800,988 + B158DRAFT_1727 0.11 +0.2
1,800,996 - B158DRAFT_1727 0.11 -0.1
1,801,085 + B158DRAFT_1727 0.15 -0.6
1,801,101 - B158DRAFT_1727 0.16 +0.2
1,801,101 - B158DRAFT_1727 0.16 -0.1
1,801,116 - B158DRAFT_1727 0.17 -0.1
1,801,175 - B158DRAFT_1727 0.20 -0.3
1,801,177 - B158DRAFT_1727 0.20 -0.4
1,801,199 - B158DRAFT_1727 0.21 -0.4
1,801,281 - B158DRAFT_1727 0.25 +0.0
1,801,326 - B158DRAFT_1727 0.27 -0.0
1,801,394 + B158DRAFT_1727 0.31 -0.3
1,801,511 + B158DRAFT_1727 0.36 -0.1
1,801,519 - B158DRAFT_1727 0.37 +0.3
1,801,528 - B158DRAFT_1727 0.37 +0.1
1,801,530 + B158DRAFT_1727 0.37 +0.3
1,801,538 + B158DRAFT_1727 0.38 +0.1
1,801,567 + B158DRAFT_1727 0.39 -0.6
1,801,590 + B158DRAFT_1727 0.40 -0.7
1,801,592 + B158DRAFT_1727 0.40 +0.2
1,801,792 + B158DRAFT_1727 0.50 +0.1
1,801,800 - B158DRAFT_1727 0.51 -0.0
1,801,937 + B158DRAFT_1727 0.57 -0.2
1,801,945 - B158DRAFT_1727 0.58 -0.3
1,801,948 + B158DRAFT_1727 0.58 -0.6
1,801,948 + B158DRAFT_1727 0.58 +0.2
1,801,948 + B158DRAFT_1727 0.58 -0.2
1,801,956 - B158DRAFT_1727 0.58 -0.6
1,801,960 - B158DRAFT_1727 0.58 -0.1
1,801,985 - B158DRAFT_1727 0.60 +0.0
1,802,017 + B158DRAFT_1727 0.61 -0.4
1,802,019 + B158DRAFT_1727 0.61 +0.7
1,802,025 - B158DRAFT_1727 0.62 +0.7
1,802,027 - B158DRAFT_1727 0.62 +0.4
1,802,027 - B158DRAFT_1727 0.62 -0.9
1,802,176 - B158DRAFT_1727 0.69 -0.5
1,802,220 - B158DRAFT_1727 0.71 +0.3
1,802,220 - B158DRAFT_1727 0.71 +0.1
1,802,261 + B158DRAFT_1727 0.73 -0.3
1,802,350 - B158DRAFT_1727 0.78 -0.8
1,802,409 - B158DRAFT_1727 0.80 +0.5
1,802,409 - B158DRAFT_1727 0.80 -0.3
1,802,419 - B158DRAFT_1727 0.81 +0.7
1,802,431 + B158DRAFT_1727 0.81 -0.4
1,802,454 - B158DRAFT_1727 0.83 -0.8
1,802,564 + B158DRAFT_1727 0.88 -1.4
1,802,589 - B158DRAFT_1727 0.89 -0.3
1,802,710 - +0.0
1,802,710 - -0.0
1,802,780 + +0.4
1,802,948 + -0.0
1,802,975 + -0.8
1,802,990 - -0.9
1,802,990 - -0.0
1,803,073 + B158DRAFT_1728 0.12 -0.6
1,803,081 - B158DRAFT_1728 0.14 -1.2
1,803,081 - B158DRAFT_1728 0.14 -0.1
1,803,106 - B158DRAFT_1728 0.20 +1.8
1,803,226 + B158DRAFT_1728 0.53 +0.4
1,803,228 + B158DRAFT_1728 0.53 -0.1
1,803,228 + B158DRAFT_1728 0.53 -0.0
1,803,228 + B158DRAFT_1728 0.53 -0.4
1,803,228 + B158DRAFT_1728 0.53 +0.1
1,803,228 + B158DRAFT_1728 0.53 +0.0
1,803,236 - B158DRAFT_1728 0.55 +0.9
1,803,236 - B158DRAFT_1728 0.55 -0.2
1,803,236 - B158DRAFT_1728 0.55 -0.1
1,803,236 - B158DRAFT_1728 0.55 +0.8
1,803,236 - B158DRAFT_1728 0.55 +0.4
1,803,236 - B158DRAFT_1728 0.55 +0.2
1,803,236 - B158DRAFT_1728 0.55 -0.1
1,803,240 + B158DRAFT_1728 0.56 +0.2
1,803,271 + B158DRAFT_1728 0.65 +0.3
1,803,273 - B158DRAFT_1728 0.65 -0.1
1,803,279 - B158DRAFT_1728 0.67 +0.3
1,803,279 - B158DRAFT_1728 0.67 -0.8
1,803,279 - B158DRAFT_1728 0.67 -0.2
1,803,279 - B158DRAFT_1728 0.67 -0.0
1,803,279 - B158DRAFT_1728 0.67 -0.7
1,803,279 - B158DRAFT_1728 0.67 -0.0
1,803,304 + B158DRAFT_1728 0.74 -1.7
1,803,320 + B158DRAFT_1728 0.78 -0.9
1,803,467 + -0.5
1,803,538 - +0.9
1,803,572 + +0.6
1,803,572 + -0.2
1,803,572 + +0.7
1,803,572 + -0.4
1,803,580 - +0.3
1,803,580 - -0.4
1,803,664 + -0.5
1,803,672 - -0.1
1,803,715 - B158DRAFT_1729 0.11 +0.0
1,803,778 - B158DRAFT_1729 0.14 +0.3

Or see this region's nucleotide sequence