Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0086

Experiment: m.b. Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0084 and B158DRAFT_0085 are separated by 230 nucleotidesB158DRAFT_0085 and B158DRAFT_0086 are separated by 7 nucleotidesB158DRAFT_0086 and B158DRAFT_0087 overlap by 1 nucleotidesB158DRAFT_0087 and B158DRAFT_0088 are separated by 2 nucleotides B158DRAFT_0084: B158DRAFT_0084 - penicillin-binding protein 2, at 78,519 to 80,447 _0084 B158DRAFT_0085: B158DRAFT_0085 - rRNA large subunit m3Psi methyltransferase RlmH, at 80,678 to 81,148 _0085 B158DRAFT_0086: B158DRAFT_0086 - iojap-like ribosome-associated protein, at 81,156 to 81,509 _0086 B158DRAFT_0087: B158DRAFT_0087 - nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 81,509 to 82,183 _0087 B158DRAFT_0088: B158DRAFT_0088 - DNA polymerase III, delta subunit (EC 2.7.7.7), at 82,186 to 83,265 _0088 Position (kb) 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1at 80.526 kb on + strandat 80.555 kb on - strandat 80.555 kb on - strandat 80.555 kb on - strandat 80.555 kb on - strandat 80.573 kb on + strandat 80.579 kb on + strandat 80.581 kb on - strandat 80.581 kb on - strandat 80.637 kb on - strandat 80.789 kb on + strand, within B158DRAFT_0085at 80.854 kb on + strand, within B158DRAFT_0085at 80.862 kb on - strand, within B158DRAFT_0085at 80.960 kb on - strand, within B158DRAFT_0085at 80.981 kb on - strand, within B158DRAFT_0085at 81.033 kb on - strand, within B158DRAFT_0085at 81.036 kb on + strand, within B158DRAFT_0085at 81.097 kb on + strand, within B158DRAFT_0085at 81.097 kb on + strand, within B158DRAFT_0085at 81.105 kb on - strandat 81.105 kb on - strandat 81.105 kb on - strandat 81.110 kb on - strandat 81.154 kb on + strandat 81.162 kb on + strandat 81.256 kb on + strand, within B158DRAFT_0086at 81.259 kb on - strand, within B158DRAFT_0086at 81.298 kb on + strand, within B158DRAFT_0086at 81.307 kb on - strand, within B158DRAFT_0086at 81.322 kb on + strand, within B158DRAFT_0086at 81.347 kb on - strand, within B158DRAFT_0086at 81.347 kb on - strand, within B158DRAFT_0086at 81.369 kb on - strand, within B158DRAFT_0086at 81.417 kb on + strand, within B158DRAFT_0086at 81.529 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.230 kb on - strandat 82.240 kb on - strandat 82.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vanillin 2 mM
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80,526 + -0.6
80,555 - +0.1
80,555 - +0.2
80,555 - +0.8
80,555 - -0.2
80,573 + -0.6
80,579 + -3.0
80,581 - -0.5
80,581 - +0.0
80,637 - +0.5
80,789 + B158DRAFT_0085 0.24 +0.4
80,854 + B158DRAFT_0085 0.37 -0.1
80,862 - B158DRAFT_0085 0.39 -0.4
80,960 - B158DRAFT_0085 0.60 -0.0
80,981 - B158DRAFT_0085 0.64 +0.1
81,033 - B158DRAFT_0085 0.75 +0.0
81,036 + B158DRAFT_0085 0.76 -0.5
81,097 + B158DRAFT_0085 0.89 -0.1
81,097 + B158DRAFT_0085 0.89 +0.1
81,105 - +0.1
81,105 - +0.0
81,105 - +0.4
81,110 - -0.2
81,154 + +0.7
81,162 + -0.3
81,256 + B158DRAFT_0086 0.28 -0.3
81,259 - B158DRAFT_0086 0.29 +0.2
81,298 + B158DRAFT_0086 0.40 +0.5
81,307 - B158DRAFT_0086 0.43 +0.1
81,322 + B158DRAFT_0086 0.47 -0.9
81,347 - B158DRAFT_0086 0.54 +0.1
81,347 - B158DRAFT_0086 0.54 +0.7
81,369 - B158DRAFT_0086 0.60 +0.3
81,417 + B158DRAFT_0086 0.74 -0.3
81,529 - +0.1
82,230 - -1.5
82,230 - +0.1
82,230 - -1.3
82,230 - -0.4
82,230 - -0.6
82,230 - -1.0
82,230 - +0.4
82,230 - -0.2
82,230 - -0.2
82,240 - -0.4
82,240 - -0.1

Or see this region's nucleotide sequence