Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2492 and B158DRAFT_2493 are separated by 9 nucleotides B158DRAFT_2493 and B158DRAFT_2494 are separated by 119 nucleotides B158DRAFT_2494 and B158DRAFT_2495 are separated by 91 nucleotides
B158DRAFT_2492: B158DRAFT_2492 - Rad3-related DNA helicases, at 673,627 to 675,588
_2492
B158DRAFT_2493: B158DRAFT_2493 - universal bacterial protein YeaZ, at 675,598 to 676,305
_2493
B158DRAFT_2494: B158DRAFT_2494 - outer membrane lipoprotein, Slp family, at 676,425 to 677,153
_2494
B158DRAFT_2495: B158DRAFT_2495 - putative efflux protein, MATE family, at 677,245 to 678,648
_2495
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 674.602 kb on + strand, within B158DRAFT_2492 at 674.605 kb on + strand, within B158DRAFT_2492 at 674.605 kb on + strand, within B158DRAFT_2492 at 674.608 kb on - strand, within B158DRAFT_2492 at 674.610 kb on - strand, within B158DRAFT_2492 at 674.610 kb on - strand, within B158DRAFT_2492 at 674.612 kb on + strand, within B158DRAFT_2492 at 674.613 kb on - strand, within B158DRAFT_2492 at 674.613 kb on - strand, within B158DRAFT_2492 at 674.637 kb on + strand, within B158DRAFT_2492 at 674.637 kb on + strand, within B158DRAFT_2492 at 674.644 kb on + strand, within B158DRAFT_2492 at 674.645 kb on - strand, within B158DRAFT_2492 at 674.718 kb on + strand, within B158DRAFT_2492 at 674.733 kb on - strand, within B158DRAFT_2492 at 674.733 kb on - strand, within B158DRAFT_2492 at 674.746 kb on - strand, within B158DRAFT_2492 at 674.754 kb on + strand, within B158DRAFT_2492 at 674.764 kb on + strand, within B158DRAFT_2492 at 674.766 kb on + strand, within B158DRAFT_2492 at 674.766 kb on + strand, within B158DRAFT_2492 at 674.772 kb on - strand, within B158DRAFT_2492 at 674.774 kb on - strand, within B158DRAFT_2492 at 674.784 kb on - strand, within B158DRAFT_2492 at 674.787 kb on + strand, within B158DRAFT_2492 at 674.805 kb on + strand, within B158DRAFT_2492 at 674.805 kb on + strand, within B158DRAFT_2492 at 674.852 kb on + strand, within B158DRAFT_2492 at 674.865 kb on - strand, within B158DRAFT_2492 at 674.865 kb on - strand, within B158DRAFT_2492 at 674.906 kb on + strand, within B158DRAFT_2492 at 674.912 kb on + strand, within B158DRAFT_2492 at 674.912 kb on + strand, within B158DRAFT_2492 at 674.912 kb on + strand, within B158DRAFT_2492 at 674.920 kb on - strand, within B158DRAFT_2492 at 674.920 kb on - strand, within B158DRAFT_2492 at 674.920 kb on - strand, within B158DRAFT_2492 at 674.920 kb on - strand, within B158DRAFT_2492 at 674.920 kb on - strand, within B158DRAFT_2492 at 674.920 kb on - strand, within B158DRAFT_2492 at 674.922 kb on + strand, within B158DRAFT_2492 at 674.930 kb on - strand, within B158DRAFT_2492 at 674.930 kb on - strand, within B158DRAFT_2492 at 674.948 kb on - strand, within B158DRAFT_2492 at 674.975 kb on - strand, within B158DRAFT_2492 at 674.975 kb on - strand, within B158DRAFT_2492 at 675.036 kb on + strand, within B158DRAFT_2492 at 675.103 kb on - strand, within B158DRAFT_2492 at 675.120 kb on - strand, within B158DRAFT_2492 at 675.141 kb on + strand, within B158DRAFT_2492 at 675.149 kb on - strand, within B158DRAFT_2492 at 675.151 kb on + strand, within B158DRAFT_2492 at 675.207 kb on + strand, within B158DRAFT_2492 at 675.215 kb on - strand, within B158DRAFT_2492 at 675.230 kb on + strand, within B158DRAFT_2492 at 675.344 kb on - strand, within B158DRAFT_2492 at 675.350 kb on - strand, within B158DRAFT_2492 at 675.404 kb on + strand at 675.419 kb on - strand at 675.489 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.290 kb on + strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.298 kb on - strand at 676.491 kb on - strand at 676.578 kb on - strand, within B158DRAFT_2494 at 676.601 kb on - strand, within B158DRAFT_2494 at 676.650 kb on + strand, within B158DRAFT_2494 at 676.658 kb on - strand, within B158DRAFT_2494 at 676.659 kb on + strand, within B158DRAFT_2494 at 676.674 kb on + strand, within B158DRAFT_2494 at 676.851 kb on - strand, within B158DRAFT_2494 at 676.863 kb on + strand, within B158DRAFT_2494 at 676.871 kb on - strand, within B158DRAFT_2494 at 676.894 kb on - strand, within B158DRAFT_2494 at 676.919 kb on + strand, within B158DRAFT_2494 at 676.987 kb on + strand, within B158DRAFT_2494 at 677.014 kb on - strand, within B158DRAFT_2494 at 677.035 kb on + strand, within B158DRAFT_2494 at 677.043 kb on - strand, within B158DRAFT_2494 at 677.043 kb on - strand, within B158DRAFT_2494 at 677.043 kb on - strand, within B158DRAFT_2494 at 677.043 kb on - strand, within B158DRAFT_2494 at 677.043 kb on - strand, within B158DRAFT_2494 at 677.043 kb on - strand, within B158DRAFT_2494 at 677.048 kb on - strand, within B158DRAFT_2494 at 677.050 kb on + strand, within B158DRAFT_2494 at 677.050 kb on + strand, within B158DRAFT_2494 at 677.050 kb on + strand, within B158DRAFT_2494 at 677.050 kb on + strand, within B158DRAFT_2494 at 677.050 kb on + strand, within B158DRAFT_2494 at 677.058 kb on - strand, within B158DRAFT_2494 at 677.058 kb on - strand, within B158DRAFT_2494 at 677.058 kb on - strand, within B158DRAFT_2494 at 677.063 kb on + strand, within B158DRAFT_2494 at 677.068 kb on + strand, within B158DRAFT_2494 at 677.071 kb on - strand, within B158DRAFT_2494 at 677.071 kb on - strand, within B158DRAFT_2494 at 677.071 kb on - strand, within B158DRAFT_2494 at 677.071 kb on - strand, within B158DRAFT_2494 at 677.080 kb on + strand, within B158DRAFT_2494 at 677.086 kb on + strand at 677.086 kb on + strand at 677.086 kb on + strand at 677.086 kb on + strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.094 kb on - strand at 677.114 kb on - strand at 677.160 kb on + strand at 677.173 kb on + strand at 677.231 kb on - strand at 677.275 kb on + strand at 677.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 674,602 + B158DRAFT_2492 0.50 +0.6 674,605 + B158DRAFT_2492 0.50 -1.5 674,605 + B158DRAFT_2492 0.50 -0.5 674,608 - B158DRAFT_2492 0.50 -0.5 674,610 - B158DRAFT_2492 0.50 -0.5 674,610 - B158DRAFT_2492 0.50 +2.0 674,612 + B158DRAFT_2492 0.50 +0.3 674,613 - B158DRAFT_2492 0.50 -0.3 674,613 - B158DRAFT_2492 0.50 +3.6 674,637 + B158DRAFT_2492 0.51 +0.9 674,637 + B158DRAFT_2492 0.51 -0.3 674,644 + B158DRAFT_2492 0.52 -1.0 674,645 - B158DRAFT_2492 0.52 +0.5 674,718 + B158DRAFT_2492 0.56 +3.8 674,733 - B158DRAFT_2492 0.56 -0.8 674,733 - B158DRAFT_2492 0.56 +0.2 674,746 - B158DRAFT_2492 0.57 -0.0 674,754 + B158DRAFT_2492 0.57 +0.4 674,764 + B158DRAFT_2492 0.58 -0.4 674,766 + B158DRAFT_2492 0.58 -0.2 674,766 + B158DRAFT_2492 0.58 -0.1 674,772 - B158DRAFT_2492 0.58 -0.3 674,774 - B158DRAFT_2492 0.58 -1.1 674,784 - B158DRAFT_2492 0.59 -0.6 674,787 + B158DRAFT_2492 0.59 +0.8 674,805 + B158DRAFT_2492 0.60 -0.2 674,805 + B158DRAFT_2492 0.60 -1.8 674,852 + B158DRAFT_2492 0.62 -1.2 674,865 - B158DRAFT_2492 0.63 -0.5 674,865 - B158DRAFT_2492 0.63 -0.4 674,906 + B158DRAFT_2492 0.65 -0.8 674,912 + B158DRAFT_2492 0.65 +0.5 674,912 + B158DRAFT_2492 0.65 -1.5 674,912 + B158DRAFT_2492 0.65 -0.9 674,920 - B158DRAFT_2492 0.66 +0.0 674,920 - B158DRAFT_2492 0.66 -1.0 674,920 - B158DRAFT_2492 0.66 -1.9 674,920 - B158DRAFT_2492 0.66 -1.0 674,920 - B158DRAFT_2492 0.66 -0.3 674,920 - B158DRAFT_2492 0.66 +0.8 674,922 + B158DRAFT_2492 0.66 +0.2 674,930 - B158DRAFT_2492 0.66 +0.1 674,930 - B158DRAFT_2492 0.66 +0.6 674,948 - B158DRAFT_2492 0.67 +1.0 674,975 - B158DRAFT_2492 0.69 +1.4 674,975 - B158DRAFT_2492 0.69 -1.3 675,036 + B158DRAFT_2492 0.72 +0.8 675,103 - B158DRAFT_2492 0.75 +0.2 675,120 - B158DRAFT_2492 0.76 -0.9 675,141 + B158DRAFT_2492 0.77 +0.0 675,149 - B158DRAFT_2492 0.78 -1.0 675,151 + B158DRAFT_2492 0.78 -0.7 675,207 + B158DRAFT_2492 0.81 -0.9 675,215 - B158DRAFT_2492 0.81 -1.0 675,230 + B158DRAFT_2492 0.82 +1.6 675,344 - B158DRAFT_2492 0.88 +0.4 675,350 - B158DRAFT_2492 0.88 -0.8 675,404 + +0.7 675,419 - -1.6 675,489 + -0.6 676,290 + -0.2 676,290 + +0.0 676,290 + +1.3 676,290 + +1.8 676,290 + -0.4 676,290 + -0.9 676,290 + -0.8 676,290 + -1.5 676,290 + +0.5 676,290 + -0.3 676,290 + -0.1 676,290 + -1.9 676,290 + -0.9 676,290 + -1.0 676,290 + +1.0 676,290 + +0.3 676,290 + +2.4 676,290 + -0.6 676,290 + +0.1 676,290 + +0.2 676,290 + -0.3 676,298 - -1.6 676,298 - +0.1 676,298 - +0.1 676,298 - -1.1 676,298 - -0.1 676,298 - -1.8 676,298 - -1.8 676,298 - -1.0 676,298 - -1.2 676,298 - -0.4 676,298 - -1.2 676,298 - -1.0 676,298 - -0.2 676,298 - +0.2 676,298 - +0.3 676,298 - +0.5 676,298 - +0.0 676,298 - +3.3 676,298 - -0.4 676,298 - -1.2 676,298 - -0.8 676,298 - +0.7 676,298 - -0.5 676,298 - -0.4 676,491 - +0.5 676,578 - B158DRAFT_2494 0.21 -1.1 676,601 - B158DRAFT_2494 0.24 +0.6 676,650 + B158DRAFT_2494 0.31 +0.4 676,658 - B158DRAFT_2494 0.32 +0.3 676,659 + B158DRAFT_2494 0.32 +0.6 676,674 + B158DRAFT_2494 0.34 -0.5 676,851 - B158DRAFT_2494 0.58 -0.5 676,863 + B158DRAFT_2494 0.60 +0.9 676,871 - B158DRAFT_2494 0.61 -1.5 676,894 - B158DRAFT_2494 0.64 -0.2 676,919 + B158DRAFT_2494 0.68 -0.6 676,987 + B158DRAFT_2494 0.77 -1.3 677,014 - B158DRAFT_2494 0.81 +0.1 677,035 + B158DRAFT_2494 0.84 +2.7 677,043 - B158DRAFT_2494 0.85 -2.1 677,043 - B158DRAFT_2494 0.85 +0.1 677,043 - B158DRAFT_2494 0.85 +0.6 677,043 - B158DRAFT_2494 0.85 -1.7 677,043 - B158DRAFT_2494 0.85 -1.2 677,043 - B158DRAFT_2494 0.85 -1.0 677,048 - B158DRAFT_2494 0.85 -1.3 677,050 + B158DRAFT_2494 0.86 -1.3 677,050 + B158DRAFT_2494 0.86 -0.8 677,050 + B158DRAFT_2494 0.86 -1.9 677,050 + B158DRAFT_2494 0.86 +5.6 677,050 + B158DRAFT_2494 0.86 -0.7 677,058 - B158DRAFT_2494 0.87 -1.4 677,058 - B158DRAFT_2494 0.87 +0.4 677,058 - B158DRAFT_2494 0.87 +1.0 677,063 + B158DRAFT_2494 0.88 -0.7 677,068 + B158DRAFT_2494 0.88 -0.4 677,071 - B158DRAFT_2494 0.89 -1.0 677,071 - B158DRAFT_2494 0.89 +0.0 677,071 - B158DRAFT_2494 0.89 -0.5 677,071 - B158DRAFT_2494 0.89 -1.1 677,080 + B158DRAFT_2494 0.90 -0.6 677,086 + +0.2 677,086 + -1.3 677,086 + +0.1 677,086 + -0.7 677,094 - -1.3 677,094 - -0.7 677,094 - -2.2 677,094 - +0.5 677,094 - -0.6 677,114 - -1.8 677,160 + +0.6 677,173 + +0.1 677,231 - -0.4 677,275 + -0.2 677,278 - -1.4
Or see this region's nucleotide sequence