Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2429 and B158DRAFT_2430 are separated by 25 nucleotides B158DRAFT_2430 and B158DRAFT_2431 overlap by 56 nucleotides B158DRAFT_2431 and B158DRAFT_2432 are separated by 39 nucleotides
B158DRAFT_2429: B158DRAFT_2429 - tryptophan synthase, beta subunit, at 602,407 to 603,618
_2429
B158DRAFT_2430: B158DRAFT_2430 - tryptophan synthase, alpha chain (EC 4.2.1.20), at 603,644 to 604,549
_2430
B158DRAFT_2431: B158DRAFT_2431 - hypothetical protein, at 604,494 to 604,742
_2431
B158DRAFT_2432: B158DRAFT_2432 - 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19), at 604,782 to 606,086
_2432
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 603.590 kb on - strand at 604.091 kb on + strand, within B158DRAFT_2430 at 604.161 kb on - strand, within B158DRAFT_2430 at 604.161 kb on - strand, within B158DRAFT_2430 at 604.161 kb on - strand, within B158DRAFT_2430 at 604.161 kb on - strand, within B158DRAFT_2430 at 604.327 kb on - strand, within B158DRAFT_2430 at 604.657 kb on - strand, within B158DRAFT_2431 at 604.732 kb on + strand at 604.732 kb on - strand at 604.737 kb on + strand at 604.745 kb on - strand at 604.745 kb on - strand at 604.745 kb on - strand at 604.745 kb on - strand at 604.759 kb on - strand at 604.811 kb on + strand at 604.818 kb on - strand at 604.867 kb on - strand at 604.891 kb on + strand at 604.891 kb on + strand at 604.891 kb on + strand at 604.899 kb on - strand at 604.946 kb on + strand, within B158DRAFT_2432 at 604.983 kb on + strand, within B158DRAFT_2432 at 605.075 kb on + strand, within B158DRAFT_2432 at 605.075 kb on + strand, within B158DRAFT_2432 at 605.107 kb on - strand, within B158DRAFT_2432 at 605.107 kb on - strand, within B158DRAFT_2432 at 605.138 kb on - strand, within B158DRAFT_2432 at 605.142 kb on + strand, within B158DRAFT_2432 at 605.142 kb on + strand, within B158DRAFT_2432 at 605.150 kb on - strand, within B158DRAFT_2432 at 605.460 kb on + strand, within B158DRAFT_2432 at 605.689 kb on + strand, within B158DRAFT_2432 at 605.713 kb on - strand, within B158DRAFT_2432 at 605.732 kb on - strand, within B158DRAFT_2432
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 603,590 - -0.8 604,091 + B158DRAFT_2430 0.49 -0.4 604,161 - B158DRAFT_2430 0.57 -1.1 604,161 - B158DRAFT_2430 0.57 -2.1 604,161 - B158DRAFT_2430 0.57 -0.9 604,161 - B158DRAFT_2430 0.57 +0.7 604,327 - B158DRAFT_2430 0.75 +7.2 604,657 - B158DRAFT_2431 0.65 +2.7 604,732 + -1.2 604,732 - +0.9 604,737 + -1.5 604,745 - +3.8 604,745 - +3.3 604,745 - +1.8 604,745 - +1.8 604,759 - +2.9 604,811 + +2.9 604,818 - +4.2 604,867 - +2.4 604,891 + +3.3 604,891 + +2.8 604,891 + +2.6 604,899 - +3.0 604,946 + B158DRAFT_2432 0.13 +3.2 604,983 + B158DRAFT_2432 0.15 +3.4 605,075 + B158DRAFT_2432 0.22 +1.8 605,075 + B158DRAFT_2432 0.22 +3.4 605,107 - B158DRAFT_2432 0.25 +3.5 605,107 - B158DRAFT_2432 0.25 +3.3 605,138 - B158DRAFT_2432 0.27 +3.8 605,142 + B158DRAFT_2432 0.28 +1.3 605,142 + B158DRAFT_2432 0.28 +3.7 605,150 - B158DRAFT_2432 0.28 +2.8 605,460 + B158DRAFT_2432 0.52 +3.6 605,689 + B158DRAFT_2432 0.70 +0.9 605,713 - B158DRAFT_2432 0.71 +3.0 605,732 - B158DRAFT_2432 0.73 +3.7
Or see this region's nucleotide sequence