Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2396 and B158DRAFT_2397 are separated by 283 nucleotides B158DRAFT_2397 and B158DRAFT_2398 are separated by 3 nucleotides B158DRAFT_2398 and B158DRAFT_2399 are separated by 129 nucleotides
B158DRAFT_2396: B158DRAFT_2396 - Geranylgeranyl pyrophosphate synthase, at 568,014 to 568,985
_2396
B158DRAFT_2397: B158DRAFT_2397 - ribosomal protein L21, at 569,269 to 569,850
_2397
B158DRAFT_2398: B158DRAFT_2398 - ribosomal protein L27, at 569,854 to 570,108
_2398
B158DRAFT_2399: B158DRAFT_2399 - Obg family GTPase CgtA, at 570,238 to 571,509
_2399
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 569.070 kb on - strand at 569.097 kb on + strand at 569.104 kb on - strand at 569.105 kb on - strand at 569.105 kb on - strand at 569.107 kb on + strand at 569.108 kb on + strand at 569.108 kb on + strand at 569.108 kb on + strand at 569.115 kb on - strand at 569.116 kb on - strand at 569.116 kb on - strand at 570.137 kb on - strand at 570.214 kb on + strand at 570.214 kb on + strand at 570.214 kb on + strand at 570.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 569,070 - -0.5 569,097 + +0.2 569,104 - -1.9 569,105 - -1.2 569,105 - -0.0 569,107 + -1.3 569,108 + -1.2 569,108 + -0.9 569,108 + -1.1 569,115 - +2.3 569,116 - -0.2 569,116 - +4.2 570,137 - +2.6 570,214 + +1.3 570,214 + +4.1 570,214 + -0.7 570,214 + +2.9
Or see this region's nucleotide sequence