Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2235

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2234 and B158DRAFT_2235 are separated by 18 nucleotidesB158DRAFT_2235 and B158DRAFT_2236 are separated by 57 nucleotidesB158DRAFT_2236 and B158DRAFT_2237 are separated by 4 nucleotides B158DRAFT_2234: B158DRAFT_2234 - 2-isopropylmalate synthase (EC 2.3.3.13), at 388,438 to 389,592 _2234 B158DRAFT_2235: B158DRAFT_2235 - hypothetical protein, at 389,611 to 390,108 _2235 B158DRAFT_2236: B158DRAFT_2236 - [SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128), at 390,166 to 390,624 _2236 B158DRAFT_2237: B158DRAFT_2237 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 390,629 to 394,015 _2237 Position (kb) 389 390 391Strain fitness (log2 ratio) -3 -2 -1 0 1at 388.642 kb on - strand, within B158DRAFT_2234at 388.704 kb on + strand, within B158DRAFT_2234at 388.704 kb on + strand, within B158DRAFT_2234at 388.704 kb on + strand, within B158DRAFT_2234at 388.712 kb on - strand, within B158DRAFT_2234at 388.729 kb on + strand, within B158DRAFT_2234at 388.737 kb on - strand, within B158DRAFT_2234at 388.737 kb on - strand, within B158DRAFT_2234at 388.779 kb on + strand, within B158DRAFT_2234at 388.792 kb on - strand, within B158DRAFT_2234at 388.947 kb on + strand, within B158DRAFT_2234at 388.955 kb on - strand, within B158DRAFT_2234at 388.961 kb on + strand, within B158DRAFT_2234at 388.969 kb on - strand, within B158DRAFT_2234at 388.969 kb on - strand, within B158DRAFT_2234at 388.969 kb on - strand, within B158DRAFT_2234at 389.082 kb on + strand, within B158DRAFT_2234at 389.095 kb on + strand, within B158DRAFT_2234at 389.103 kb on - strand, within B158DRAFT_2234at 389.183 kb on - strand, within B158DRAFT_2234at 389.297 kb on - strand, within B158DRAFT_2234at 389.373 kb on - strand, within B158DRAFT_2234at 389.390 kb on + strand, within B158DRAFT_2234at 389.444 kb on - strand, within B158DRAFT_2234at 389.484 kb on - strandat 389.576 kb on + strandat 389.586 kb on + strandat 389.586 kb on + strandat 389.678 kb on + strand, within B158DRAFT_2235at 389.753 kb on - strand, within B158DRAFT_2235at 389.805 kb on - strand, within B158DRAFT_2235at 389.814 kb on + strand, within B158DRAFT_2235at 389.838 kb on - strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.871 kb on + strand, within B158DRAFT_2235at 389.879 kb on - strand, within B158DRAFT_2235at 389.879 kb on - strand, within B158DRAFT_2235at 389.879 kb on - strand, within B158DRAFT_2235at 389.879 kb on - strand, within B158DRAFT_2235at 389.879 kb on - strand, within B158DRAFT_2235at 389.909 kb on + strand, within B158DRAFT_2235at 389.959 kb on + strand, within B158DRAFT_2235at 389.982 kb on + strand, within B158DRAFT_2235at 389.988 kb on + strand, within B158DRAFT_2235at 389.988 kb on + strand, within B158DRAFT_2235at 389.998 kb on + strand, within B158DRAFT_2235at 390.021 kb on + strand, within B158DRAFT_2235at 390.026 kb on + strand, within B158DRAFT_2235at 390.034 kb on - strand, within B158DRAFT_2235at 390.098 kb on + strandat 390.098 kb on + strandat 390.106 kb on - strandat 390.225 kb on + strand, within B158DRAFT_2236at 390.225 kb on + strand, within B158DRAFT_2236at 390.233 kb on - strand, within B158DRAFT_2236at 390.233 kb on - strand, within B158DRAFT_2236at 390.233 kb on - strand, within B158DRAFT_2236at 390.235 kb on + strand, within B158DRAFT_2236at 390.235 kb on + strand, within B158DRAFT_2236at 390.243 kb on - strand, within B158DRAFT_2236at 390.243 kb on - strand, within B158DRAFT_2236at 390.256 kb on - strand, within B158DRAFT_2236at 390.266 kb on - strand, within B158DRAFT_2236at 390.268 kb on + strand, within B158DRAFT_2236at 390.285 kb on + strand, within B158DRAFT_2236at 390.287 kb on + strand, within B158DRAFT_2236at 390.287 kb on + strand, within B158DRAFT_2236at 390.287 kb on + strand, within B158DRAFT_2236at 390.298 kb on + strand, within B158DRAFT_2236at 390.300 kb on - strand, within B158DRAFT_2236at 390.302 kb on + strand, within B158DRAFT_2236at 390.306 kb on - strand, within B158DRAFT_2236at 390.319 kb on + strand, within B158DRAFT_2236at 390.407 kb on + strand, within B158DRAFT_2236at 390.447 kb on + strand, within B158DRAFT_2236at 390.455 kb on + strand, within B158DRAFT_2236at 390.455 kb on + strand, within B158DRAFT_2236at 390.463 kb on - strand, within B158DRAFT_2236at 390.493 kb on - strand, within B158DRAFT_2236at 390.653 kb on - strandat 390.782 kb on - strandat 390.797 kb on - strandat 390.944 kb on - strandat 390.958 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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388,642 - B158DRAFT_2234 0.18 +0.4
388,704 + B158DRAFT_2234 0.23 -0.5
388,704 + B158DRAFT_2234 0.23 +0.7
388,704 + B158DRAFT_2234 0.23 -0.4
388,712 - B158DRAFT_2234 0.24 -2.0
388,729 + B158DRAFT_2234 0.25 -1.2
388,737 - B158DRAFT_2234 0.26 +0.7
388,737 - B158DRAFT_2234 0.26 -2.2
388,779 + B158DRAFT_2234 0.30 -1.5
388,792 - B158DRAFT_2234 0.31 -1.7
388,947 + B158DRAFT_2234 0.44 -1.4
388,955 - B158DRAFT_2234 0.45 -0.4
388,961 + B158DRAFT_2234 0.45 +0.5
388,969 - B158DRAFT_2234 0.46 -0.2
388,969 - B158DRAFT_2234 0.46 -0.9
388,969 - B158DRAFT_2234 0.46 -0.1
389,082 + B158DRAFT_2234 0.56 -1.1
389,095 + B158DRAFT_2234 0.57 -1.8
389,103 - B158DRAFT_2234 0.58 -0.7
389,183 - B158DRAFT_2234 0.65 +0.9
389,297 - B158DRAFT_2234 0.74 -0.7
389,373 - B158DRAFT_2234 0.81 -0.5
389,390 + B158DRAFT_2234 0.82 +0.8
389,444 - B158DRAFT_2234 0.87 -0.9
389,484 - -1.4
389,576 + -2.2
389,586 + -0.1
389,586 + -1.0
389,678 + B158DRAFT_2235 0.13 -2.0
389,753 - B158DRAFT_2235 0.29 -1.3
389,805 - B158DRAFT_2235 0.39 -0.5
389,814 + B158DRAFT_2235 0.41 -0.2
389,838 - B158DRAFT_2235 0.46 -0.2
389,871 + B158DRAFT_2235 0.52 -0.1
389,871 + B158DRAFT_2235 0.52 -1.3
389,871 + B158DRAFT_2235 0.52 -0.1
389,871 + B158DRAFT_2235 0.52 -2.5
389,871 + B158DRAFT_2235 0.52 -0.4
389,871 + B158DRAFT_2235 0.52 -0.3
389,871 + B158DRAFT_2235 0.52 -1.2
389,871 + B158DRAFT_2235 0.52 +0.7
389,871 + B158DRAFT_2235 0.52 +1.3
389,871 + B158DRAFT_2235 0.52 -0.2
389,871 + B158DRAFT_2235 0.52 -0.7
389,871 + B158DRAFT_2235 0.52 -1.3
389,871 + B158DRAFT_2235 0.52 +0.5
389,871 + B158DRAFT_2235 0.52 -0.2
389,871 + B158DRAFT_2235 0.52 -1.5
389,879 - B158DRAFT_2235 0.54 -1.9
389,879 - B158DRAFT_2235 0.54 -0.1
389,879 - B158DRAFT_2235 0.54 -0.9
389,879 - B158DRAFT_2235 0.54 -1.0
389,879 - B158DRAFT_2235 0.54 -1.3
389,909 + B158DRAFT_2235 0.60 +0.1
389,959 + B158DRAFT_2235 0.70 -0.6
389,982 + B158DRAFT_2235 0.74 -0.3
389,988 + B158DRAFT_2235 0.76 -1.5
389,988 + B158DRAFT_2235 0.76 -0.6
389,998 + B158DRAFT_2235 0.78 +0.9
390,021 + B158DRAFT_2235 0.82 -0.7
390,026 + B158DRAFT_2235 0.83 +0.8
390,034 - B158DRAFT_2235 0.85 -1.4
390,098 + -0.2
390,098 + -2.8
390,106 - -1.1
390,225 + B158DRAFT_2236 0.13 -0.6
390,225 + B158DRAFT_2236 0.13 +0.2
390,233 - B158DRAFT_2236 0.15 -0.7
390,233 - B158DRAFT_2236 0.15 -0.1
390,233 - B158DRAFT_2236 0.15 +0.7
390,235 + B158DRAFT_2236 0.15 -0.5
390,235 + B158DRAFT_2236 0.15 +1.3
390,243 - B158DRAFT_2236 0.17 -0.9
390,243 - B158DRAFT_2236 0.17 -0.5
390,256 - B158DRAFT_2236 0.20 -1.2
390,266 - B158DRAFT_2236 0.22 -0.6
390,268 + B158DRAFT_2236 0.22 +0.6
390,285 + B158DRAFT_2236 0.26 +0.4
390,287 + B158DRAFT_2236 0.26 -0.7
390,287 + B158DRAFT_2236 0.26 -1.1
390,287 + B158DRAFT_2236 0.26 -0.5
390,298 + B158DRAFT_2236 0.29 -0.3
390,300 - B158DRAFT_2236 0.29 -1.3
390,302 + B158DRAFT_2236 0.30 +0.0
390,306 - B158DRAFT_2236 0.31 -0.1
390,319 + B158DRAFT_2236 0.33 +0.6
390,407 + B158DRAFT_2236 0.53 +1.1
390,447 + B158DRAFT_2236 0.61 -0.1
390,455 + B158DRAFT_2236 0.63 -1.7
390,455 + B158DRAFT_2236 0.63 -0.3
390,463 - B158DRAFT_2236 0.65 -2.8
390,493 - B158DRAFT_2236 0.71 -0.8
390,653 - -0.3
390,782 - -0.2
390,797 - -0.3
390,944 - -0.5
390,958 - -0.4

Or see this region's nucleotide sequence