Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2176 and B158DRAFT_2177 are separated by 83 nucleotides B158DRAFT_2177 and B158DRAFT_2178 are separated by 29 nucleotides B158DRAFT_2178 and B158DRAFT_2179 overlap by 10 nucleotides
B158DRAFT_2176: B158DRAFT_2176 - folate-binding protein YgfZ, at 323,768 to 324,706
_2176
B158DRAFT_2177: B158DRAFT_2177 - Uncharacterized conserved protein, at 324,790 to 325,044
_2177
B158DRAFT_2178: B158DRAFT_2178 - hypothetical protein, at 325,074 to 325,580
_2178
B158DRAFT_2179: B158DRAFT_2179 - L-aspartate oxidase (EC 1.4.3.16), at 325,571 to 327,187
_2179
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 324.658 kb on - strand at 324.738 kb on + strand at 324.754 kb on - strand at 324.754 kb on - strand at 325.100 kb on + strand at 325.100 kb on + strand at 325.108 kb on - strand at 325.137 kb on + strand, within B158DRAFT_2178 at 325.153 kb on + strand, within B158DRAFT_2178 at 325.153 kb on + strand, within B158DRAFT_2178 at 325.186 kb on - strand, within B158DRAFT_2178 at 325.257 kb on + strand, within B158DRAFT_2178 at 325.315 kb on + strand, within B158DRAFT_2178 at 325.332 kb on - strand, within B158DRAFT_2178 at 325.444 kb on + strand, within B158DRAFT_2178 at 325.531 kb on - strand at 325.534 kb on - strand at 325.534 kb on - strand at 325.591 kb on + strand at 325.612 kb on - strand at 325.637 kb on - strand at 325.641 kb on + strand at 325.641 kb on + strand at 325.649 kb on - strand at 325.649 kb on - strand at 325.649 kb on - strand at 325.680 kb on - strand at 325.847 kb on + strand, within B158DRAFT_2179 at 325.934 kb on + strand, within B158DRAFT_2179 at 325.966 kb on - strand, within B158DRAFT_2179 at 325.981 kb on - strand, within B158DRAFT_2179
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 324,658 - +0.5 324,738 + +1.4 324,754 - -1.3 324,754 - -0.1 325,100 + +2.5 325,100 + -0.2 325,108 - +0.4 325,137 + B158DRAFT_2178 0.12 +0.0 325,153 + B158DRAFT_2178 0.16 -0.6 325,153 + B158DRAFT_2178 0.16 -1.6 325,186 - B158DRAFT_2178 0.22 -0.5 325,257 + B158DRAFT_2178 0.36 -2.3 325,315 + B158DRAFT_2178 0.48 -0.3 325,332 - B158DRAFT_2178 0.51 +1.5 325,444 + B158DRAFT_2178 0.73 +1.1 325,531 - -1.6 325,534 - -1.3 325,534 - -0.6 325,591 + -0.9 325,612 - -0.3 325,637 - -0.3 325,641 + +0.4 325,641 + +0.5 325,649 - +0.6 325,649 - +1.3 325,649 - +0.8 325,680 - +0.3 325,847 + B158DRAFT_2179 0.17 -0.3 325,934 + B158DRAFT_2179 0.22 +0.3 325,966 - B158DRAFT_2179 0.24 -1.7 325,981 - B158DRAFT_2179 0.25 +2.1
Or see this region's nucleotide sequence