Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2133 and B158DRAFT_2134 are separated by 116 nucleotides B158DRAFT_2134 and B158DRAFT_2135 are separated by 118 nucleotides B158DRAFT_2135 and B158DRAFT_2136 are separated by 155 nucleotides B158DRAFT_2136 and B158DRAFT_2137 are separated by 487 nucleotides
B158DRAFT_2133: B158DRAFT_2133 - Uncharacterized protein conserved in bacteria, at 268,428 to 268,625
_2133
B158DRAFT_2134: B158DRAFT_2134 - Negative regulator of beta-lactamase expression, at 268,742 to 269,308
_2134
B158DRAFT_2135: B158DRAFT_2135 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 269,427 to 270,296
_2135
B158DRAFT_2136: B158DRAFT_2136 - Predicted endonuclease containing a URI domain, at 270,452 to 270,754
_2136
B158DRAFT_2137: B158DRAFT_2137 - prepilin-type N-terminal cleavage/methylation domain, at 271,242 to 271,691
_2137
Position (kb) 269
270
271 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 268.541 kb on - strand, within B158DRAFT_2133 at 268.594 kb on + strand, within B158DRAFT_2133 at 268.659 kb on - strand at 268.695 kb on - strand at 268.728 kb on + strand at 268.730 kb on + strand at 268.736 kb on - strand at 268.736 kb on - strand at 268.736 kb on - strand at 268.738 kb on + strand at 268.788 kb on - strand at 268.788 kb on - strand at 268.788 kb on - strand at 268.893 kb on - strand, within B158DRAFT_2134 at 268.893 kb on - strand, within B158DRAFT_2134 at 268.894 kb on + strand, within B158DRAFT_2134 at 268.909 kb on + strand, within B158DRAFT_2134 at 268.923 kb on + strand, within B158DRAFT_2134 at 268.931 kb on - strand, within B158DRAFT_2134 at 268.931 kb on - strand, within B158DRAFT_2134 at 268.931 kb on - strand, within B158DRAFT_2134 at 268.932 kb on + strand, within B158DRAFT_2134 at 268.932 kb on - strand, within B158DRAFT_2134 at 268.965 kb on + strand, within B158DRAFT_2134 at 269.051 kb on + strand, within B158DRAFT_2134 at 269.059 kb on - strand, within B158DRAFT_2134 at 269.080 kb on - strand, within B158DRAFT_2134 at 269.107 kb on + strand, within B158DRAFT_2134 at 269.131 kb on + strand, within B158DRAFT_2134 at 269.197 kb on + strand, within B158DRAFT_2134 at 269.197 kb on + strand, within B158DRAFT_2134 at 269.197 kb on + strand, within B158DRAFT_2134 at 269.197 kb on + strand, within B158DRAFT_2134 at 269.205 kb on - strand, within B158DRAFT_2134 at 269.205 kb on - strand, within B158DRAFT_2134 at 269.205 kb on - strand, within B158DRAFT_2134 at 269.205 kb on - strand, within B158DRAFT_2134 at 269.242 kb on - strand, within B158DRAFT_2134 at 269.260 kb on - strand at 269.329 kb on - strand at 269.390 kb on + strand at 269.413 kb on + strand at 269.413 kb on + strand at 270.270 kb on + strand at 270.379 kb on + strand at 270.388 kb on - strand at 270.388 kb on - strand at 270.424 kb on - strand at 270.461 kb on + strand at 270.468 kb on + strand at 270.468 kb on + strand at 270.468 kb on + strand at 270.476 kb on - strand at 270.476 kb on - strand at 270.486 kb on - strand, within B158DRAFT_2136 at 270.497 kb on + strand, within B158DRAFT_2136 at 270.499 kb on + strand, within B158DRAFT_2136 at 270.507 kb on - strand, within B158DRAFT_2136 at 270.684 kb on + strand, within B158DRAFT_2136 at 270.684 kb on + strand, within B158DRAFT_2136 at 270.697 kb on + strand, within B158DRAFT_2136 at 270.697 kb on + strand, within B158DRAFT_2136 at 270.817 kb on + strand at 270.819 kb on + strand at 270.835 kb on + strand at 270.835 kb on + strand at 271.087 kb on + strand at 271.087 kb on + strand at 271.095 kb on - strand at 271.118 kb on + strand at 271.126 kb on - strand at 271.126 kb on - strand at 271.126 kb on - strand at 271.139 kb on + strand at 271.139 kb on + strand at 271.139 kb on + strand at 271.139 kb on + strand at 271.139 kb on + strand at 271.139 kb on + strand at 271.139 kb on + strand at 271.139 kb on + strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.147 kb on - strand at 271.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 268,541 - B158DRAFT_2133 0.57 -0.7 268,594 + B158DRAFT_2133 0.84 -1.2 268,659 - +0.1 268,695 - +1.3 268,728 + +0.0 268,730 + -1.5 268,736 - -1.4 268,736 - -0.6 268,736 - +0.3 268,738 + -0.8 268,788 - +2.2 268,788 - +0.3 268,788 - +0.8 268,893 - B158DRAFT_2134 0.27 +1.1 268,893 - B158DRAFT_2134 0.27 -0.6 268,894 + B158DRAFT_2134 0.27 +1.6 268,909 + B158DRAFT_2134 0.29 +0.7 268,923 + B158DRAFT_2134 0.32 -2.6 268,931 - B158DRAFT_2134 0.33 +2.9 268,931 - B158DRAFT_2134 0.33 +2.5 268,931 - B158DRAFT_2134 0.33 +2.2 268,932 + B158DRAFT_2134 0.34 +2.9 268,932 - B158DRAFT_2134 0.34 +4.5 268,965 + B158DRAFT_2134 0.39 +1.9 269,051 + B158DRAFT_2134 0.54 +3.5 269,059 - B158DRAFT_2134 0.56 +1.7 269,080 - B158DRAFT_2134 0.60 +5.5 269,107 + B158DRAFT_2134 0.64 +0.7 269,131 + B158DRAFT_2134 0.69 +2.2 269,197 + B158DRAFT_2134 0.80 +0.9 269,197 + B158DRAFT_2134 0.80 -2.0 269,197 + B158DRAFT_2134 0.80 -1.0 269,197 + B158DRAFT_2134 0.80 +1.7 269,205 - B158DRAFT_2134 0.82 +1.1 269,205 - B158DRAFT_2134 0.82 +3.5 269,205 - B158DRAFT_2134 0.82 +3.5 269,205 - B158DRAFT_2134 0.82 +1.9 269,242 - B158DRAFT_2134 0.88 +2.9 269,260 - +0.8 269,329 - +5.5 269,390 + +1.1 269,413 + -0.6 269,413 + -0.7 270,270 + +3.0 270,379 + -0.5 270,388 - -2.4 270,388 - -0.0 270,424 - -1.6 270,461 + -0.9 270,468 + +2.6 270,468 + +1.4 270,468 + -0.0 270,476 - -1.4 270,476 - +1.3 270,486 - B158DRAFT_2136 0.11 +1.5 270,497 + B158DRAFT_2136 0.15 -1.0 270,499 + B158DRAFT_2136 0.16 -1.1 270,507 - B158DRAFT_2136 0.18 +0.0 270,684 + B158DRAFT_2136 0.77 -1.9 270,684 + B158DRAFT_2136 0.77 +1.9 270,697 + B158DRAFT_2136 0.81 +0.3 270,697 + B158DRAFT_2136 0.81 -1.5 270,817 + -0.7 270,819 + -1.1 270,835 + -0.8 270,835 + -2.2 271,087 + -0.1 271,087 + +1.3 271,095 - -1.2 271,118 + -1.4 271,126 - +1.7 271,126 - +0.9 271,126 - -0.1 271,139 + -0.2 271,139 + -1.6 271,139 + +2.5 271,139 + +0.7 271,139 + +0.5 271,139 + +0.1 271,139 + -1.0 271,139 + +0.8 271,147 - -0.1 271,147 - -0.0 271,147 - -0.4 271,147 - -1.1 271,147 - +0.8 271,147 - +0.7 271,147 - +1.5 271,147 - +0.6 271,147 - +1.5 271,147 - +0.5 271,284 + +4.5
Or see this region's nucleotide sequence