Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2065 and B158DRAFT_2066 are separated by 145 nucleotides B158DRAFT_2066 and B158DRAFT_2067 are separated by 3 nucleotides B158DRAFT_2067 and B158DRAFT_2068 are separated by 61 nucleotides B158DRAFT_2068 and B158DRAFT_2069 are separated by 4 nucleotides
B158DRAFT_2065: B158DRAFT_2065 - cell shape determining protein, MreB/Mrl family, at 200,838 to 201,881
_2065
B158DRAFT_2066: B158DRAFT_2066 - rod shape-determining protein MreC, at 202,027 to 202,815
_2066
B158DRAFT_2067: B158DRAFT_2067 - rod shape-determining protein MreD, at 202,819 to 203,316
_2067
B158DRAFT_2068: B158DRAFT_2068 - MAF protein, at 203,378 to 204,007
_2068
B158DRAFT_2069: B158DRAFT_2069 - ribonuclease, Rne/Rng family, at 204,012 to 205,508
_2069
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 202.749 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.310 kb on + strand at 203.318 kb on - strand at 203.318 kb on - strand at 203.318 kb on - strand at 203.318 kb on - strand at 203.318 kb on - strand at 203.318 kb on - strand at 203.318 kb on - strand at 203.318 kb on - strand at 203.321 kb on + strand at 203.328 kb on - strand at 203.328 kb on - strand at 203.380 kb on - strand at 203.380 kb on - strand at 203.412 kb on - strand at 203.449 kb on - strand, within B158DRAFT_2068 at 203.496 kb on + strand, within B158DRAFT_2068 at 203.501 kb on + strand, within B158DRAFT_2068 at 203.501 kb on + strand, within B158DRAFT_2068 at 203.509 kb on - strand, within B158DRAFT_2068 at 203.531 kb on + strand, within B158DRAFT_2068 at 203.606 kb on - strand, within B158DRAFT_2068 at 203.647 kb on - strand, within B158DRAFT_2068 at 203.682 kb on + strand, within B158DRAFT_2068 at 203.692 kb on + strand, within B158DRAFT_2068 at 203.695 kb on + strand, within B158DRAFT_2068 at 203.700 kb on - strand, within B158DRAFT_2068 at 203.700 kb on - strand, within B158DRAFT_2068 at 203.700 kb on - strand, within B158DRAFT_2068 at 203.710 kb on - strand, within B158DRAFT_2068 at 203.711 kb on - strand, within B158DRAFT_2068 at 203.818 kb on + strand, within B158DRAFT_2068 at 203.818 kb on + strand, within B158DRAFT_2068 at 203.826 kb on - strand, within B158DRAFT_2068 at 203.900 kb on - strand, within B158DRAFT_2068 at 203.902 kb on - strand, within B158DRAFT_2068 at 203.938 kb on + strand, within B158DRAFT_2068 at 203.944 kb on + strand, within B158DRAFT_2068 at 203.981 kb on - strand at 204.078 kb on + strand at 204.192 kb on + strand, within B158DRAFT_2069 at 204.272 kb on - strand, within B158DRAFT_2069
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 202,749 + +3.9 203,310 + +6.7 203,310 + -1.0 203,310 + -1.2 203,310 + +1.2 203,310 + -1.7 203,310 + -0.1 203,310 + +0.6 203,310 + -0.9 203,310 + -0.4 203,318 - -1.1 203,318 - +0.5 203,318 - +0.9 203,318 - +0.5 203,318 - -0.2 203,318 - +1.7 203,318 - +1.6 203,318 - +0.7 203,321 + -1.6 203,328 - +2.8 203,328 - -0.7 203,380 - -1.0 203,380 - +0.0 203,412 - +0.6 203,449 - B158DRAFT_2068 0.11 -0.6 203,496 + B158DRAFT_2068 0.19 -1.9 203,501 + B158DRAFT_2068 0.20 -0.4 203,501 + B158DRAFT_2068 0.20 +1.7 203,509 - B158DRAFT_2068 0.21 +1.8 203,531 + B158DRAFT_2068 0.24 +0.8 203,606 - B158DRAFT_2068 0.36 +0.6 203,647 - B158DRAFT_2068 0.43 +0.6 203,682 + B158DRAFT_2068 0.48 +0.3 203,692 + B158DRAFT_2068 0.50 -1.0 203,695 + B158DRAFT_2068 0.50 -0.1 203,700 - B158DRAFT_2068 0.51 -0.1 203,700 - B158DRAFT_2068 0.51 +0.3 203,700 - B158DRAFT_2068 0.51 +1.4 203,710 - B158DRAFT_2068 0.53 +0.0 203,711 - B158DRAFT_2068 0.53 -1.2 203,818 + B158DRAFT_2068 0.70 -2.5 203,818 + B158DRAFT_2068 0.70 -2.4 203,826 - B158DRAFT_2068 0.71 +1.3 203,900 - B158DRAFT_2068 0.83 +4.0 203,902 - B158DRAFT_2068 0.83 +2.0 203,938 + B158DRAFT_2068 0.89 -0.0 203,944 + B158DRAFT_2068 0.90 +0.3 203,981 - +1.7 204,078 + +0.6 204,192 + B158DRAFT_2069 0.12 -0.2 204,272 - B158DRAFT_2069 0.17 +3.1
Or see this region's nucleotide sequence