Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1923

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1922 and B158DRAFT_1923 are separated by 117 nucleotidesB158DRAFT_1923 and B158DRAFT_1924 are separated by 93 nucleotidesB158DRAFT_1924 and B158DRAFT_1925 are separated by 49 nucleotides B158DRAFT_1922: B158DRAFT_1922 - Uncharacterized protein involved in outer membrane biogenesis, at 57,727 to 59,574 _1922 B158DRAFT_1923: B158DRAFT_1923 - hypothetical protein, at 59,692 to 60,450 _1923 B158DRAFT_1924: B158DRAFT_1924 - Methyltransferase domain., at 60,544 to 61,176 _1924 B158DRAFT_1925: B158DRAFT_1925 - ATPase components of ABC transporters with duplicated ATPase domains, at 61,226 to 63,136 _1925 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 58.737 kb on + strand, within B158DRAFT_1922at 58.807 kb on - strand, within B158DRAFT_1922at 58.809 kb on + strand, within B158DRAFT_1922at 58.817 kb on - strand, within B158DRAFT_1922at 58.834 kb on - strand, within B158DRAFT_1922at 58.850 kb on - strand, within B158DRAFT_1922at 58.914 kb on - strand, within B158DRAFT_1922at 58.914 kb on - strand, within B158DRAFT_1922at 58.919 kb on - strand, within B158DRAFT_1922at 58.929 kb on - strand, within B158DRAFT_1922at 59.066 kb on + strand, within B158DRAFT_1922at 59.066 kb on + strand, within B158DRAFT_1922at 59.089 kb on + strand, within B158DRAFT_1922at 59.134 kb on + strand, within B158DRAFT_1922at 59.134 kb on + strand, within B158DRAFT_1922at 59.134 kb on + strand, within B158DRAFT_1922at 59.142 kb on - strand, within B158DRAFT_1922at 59.142 kb on - strand, within B158DRAFT_1922at 59.148 kb on - strand, within B158DRAFT_1922at 59.150 kb on + strand, within B158DRAFT_1922at 59.158 kb on - strand, within B158DRAFT_1922at 59.158 kb on - strand, within B158DRAFT_1922at 59.172 kb on - strand, within B158DRAFT_1922at 59.193 kb on + strand, within B158DRAFT_1922at 59.212 kb on + strand, within B158DRAFT_1922at 59.224 kb on + strand, within B158DRAFT_1922at 59.260 kb on + strand, within B158DRAFT_1922at 59.280 kb on + strand, within B158DRAFT_1922at 59.326 kb on - strand, within B158DRAFT_1922at 59.331 kb on + strand, within B158DRAFT_1922at 59.331 kb on + strand, within B158DRAFT_1922at 59.396 kb on + strandat 59.404 kb on - strandat 59.417 kb on + strandat 59.425 kb on - strandat 59.480 kb on - strandat 59.511 kb on + strandat 59.511 kb on + strandat 59.519 kb on - strandat 59.573 kb on - strandat 59.630 kb on + strandat 59.638 kb on - strandat 59.638 kb on - strandat 59.783 kb on + strand, within B158DRAFT_1923at 59.783 kb on + strand, within B158DRAFT_1923at 59.783 kb on + strand, within B158DRAFT_1923at 59.804 kb on + strand, within B158DRAFT_1923at 60.002 kb on - strand, within B158DRAFT_1923at 60.049 kb on - strand, within B158DRAFT_1923at 60.149 kb on + strand, within B158DRAFT_1923at 60.215 kb on - strand, within B158DRAFT_1923at 60.224 kb on + strand, within B158DRAFT_1923at 60.377 kb on + strandat 60.381 kb on + strandat 60.466 kb on + strandat 60.466 kb on + strandat 60.466 kb on + strandat 60.474 kb on - strandat 60.474 kb on - strandat 60.474 kb on - strandat 60.474 kb on - strandat 60.542 kb on + strandat 60.542 kb on + strandat 60.550 kb on - strandat 60.623 kb on - strand, within B158DRAFT_1924at 60.721 kb on + strand, within B158DRAFT_1924at 60.731 kb on + strand, within B158DRAFT_1924at 60.739 kb on - strand, within B158DRAFT_1924at 60.863 kb on - strand, within B158DRAFT_1924at 60.912 kb on - strand, within B158DRAFT_1924at 60.990 kb on - strand, within B158DRAFT_1924at 61.018 kb on + strand, within B158DRAFT_1924at 61.050 kb on + strand, within B158DRAFT_1924at 61.109 kb on + strand, within B158DRAFT_1924at 61.117 kb on - strandat 61.153 kb on - strandat 61.166 kb on + strandat 61.172 kb on - strandat 61.172 kb on - strandat 61.174 kb on - strandat 61.179 kb on - strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.269 kb on + strandat 61.274 kb on + strandat 61.274 kb on + strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.277 kb on - strandat 61.282 kb on - strandat 61.287 kb on - strandat 61.418 kb on + strand, within B158DRAFT_1925at 61.438 kb on + strand, within B158DRAFT_1925

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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58,737 + B158DRAFT_1922 0.55 -0.9
58,807 - B158DRAFT_1922 0.58 -0.7
58,809 + B158DRAFT_1922 0.59 -2.1
58,817 - B158DRAFT_1922 0.59 +0.9
58,834 - B158DRAFT_1922 0.60 -1.5
58,850 - B158DRAFT_1922 0.61 -0.7
58,914 - B158DRAFT_1922 0.64 -2.0
58,914 - B158DRAFT_1922 0.64 -0.3
58,919 - B158DRAFT_1922 0.65 +0.5
58,929 - B158DRAFT_1922 0.65 +0.5
59,066 + B158DRAFT_1922 0.72 -0.7
59,066 + B158DRAFT_1922 0.72 -2.1
59,089 + B158DRAFT_1922 0.74 -0.0
59,134 + B158DRAFT_1922 0.76 -2.9
59,134 + B158DRAFT_1922 0.76 +0.5
59,134 + B158DRAFT_1922 0.76 -1.1
59,142 - B158DRAFT_1922 0.77 +0.9
59,142 - B158DRAFT_1922 0.77 -1.3
59,148 - B158DRAFT_1922 0.77 -0.0
59,150 + B158DRAFT_1922 0.77 -3.1
59,158 - B158DRAFT_1922 0.77 -0.5
59,158 - B158DRAFT_1922 0.77 -1.4
59,172 - B158DRAFT_1922 0.78 -0.3
59,193 + B158DRAFT_1922 0.79 -1.2
59,212 + B158DRAFT_1922 0.80 -2.4
59,224 + B158DRAFT_1922 0.81 -1.0
59,260 + B158DRAFT_1922 0.83 +0.6
59,280 + B158DRAFT_1922 0.84 -1.3
59,326 - B158DRAFT_1922 0.87 -1.5
59,331 + B158DRAFT_1922 0.87 -0.2
59,331 + B158DRAFT_1922 0.87 +1.2
59,396 + -1.2
59,404 - +0.2
59,417 + +0.5
59,425 - -2.1
59,480 - -2.1
59,511 + -1.5
59,511 + -1.6
59,519 - -0.7
59,573 - -0.0
59,630 + -1.3
59,638 - -1.2
59,638 - -1.2
59,783 + B158DRAFT_1923 0.12 +0.6
59,783 + B158DRAFT_1923 0.12 -0.2
59,783 + B158DRAFT_1923 0.12 +0.1
59,804 + B158DRAFT_1923 0.15 -1.7
60,002 - B158DRAFT_1923 0.41 +1.3
60,049 - B158DRAFT_1923 0.47 +4.5
60,149 + B158DRAFT_1923 0.60 +3.5
60,215 - B158DRAFT_1923 0.69 +3.5
60,224 + B158DRAFT_1923 0.70 +0.9
60,377 + -1.0
60,381 + -0.4
60,466 + -1.1
60,466 + +0.4
60,466 + +3.1
60,474 - -2.4
60,474 - -3.6
60,474 - +0.4
60,474 - +2.5
60,542 + -0.5
60,542 + -1.4
60,550 - -1.2
60,623 - B158DRAFT_1924 0.12 -0.6
60,721 + B158DRAFT_1924 0.28 -0.2
60,731 + B158DRAFT_1924 0.30 -2.8
60,739 - B158DRAFT_1924 0.31 -0.6
60,863 - B158DRAFT_1924 0.50 -0.4
60,912 - B158DRAFT_1924 0.58 +0.9
60,990 - B158DRAFT_1924 0.70 -1.1
61,018 + B158DRAFT_1924 0.75 -0.7
61,050 + B158DRAFT_1924 0.80 -0.2
61,109 + B158DRAFT_1924 0.89 -0.4
61,117 - -0.3
61,153 - +4.5
61,166 + -0.8
61,172 - -1.1
61,172 - -1.2
61,174 - -0.9
61,179 - +0.9
61,269 + -1.1
61,269 + -1.5
61,269 + -0.6
61,269 + +0.9
61,269 + -1.3
61,269 + -2.1
61,269 + -1.4
61,274 + -1.7
61,274 + -0.5
61,277 - -1.0
61,277 - -1.4
61,277 - -0.1
61,277 - -1.0
61,277 - -1.6
61,277 - +1.7
61,277 - -0.3
61,277 - -0.4
61,277 - +0.1
61,277 - -0.5
61,277 - +2.1
61,282 - -0.4
61,287 - -0.1
61,418 + B158DRAFT_1925 0.10 +2.5
61,438 + B158DRAFT_1925 0.11 +0.0

Or see this region's nucleotide sequence