Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1818

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1817 and B158DRAFT_1818 are separated by 37 nucleotidesB158DRAFT_1818 and B158DRAFT_1819 are separated by 2 nucleotides B158DRAFT_1817: B158DRAFT_1817 - seryl-tRNA synthetase (EC 6.1.1.11), at 1,915,438 to 1,916,706 _1817 B158DRAFT_1818: B158DRAFT_1818 - protein CrcB, at 1,916,744 to 1,917,127 _1818 B158DRAFT_1819: B158DRAFT_1819 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 1,917,130 to 1,918,467 _1819 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1916.829 kb on + strand, within B158DRAFT_1818at 1916.829 kb on + strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.837 kb on - strand, within B158DRAFT_1818at 1916.864 kb on + strand, within B158DRAFT_1818at 1917.015 kb on - strand, within B158DRAFT_1818at 1917.093 kb on - strandat 1917.128 kb on + strandat 1917.152 kb on + strandat 1917.160 kb on - strandat 1917.160 kb on - strandat 1917.166 kb on - strandat 1917.166 kb on - strandat 1917.205 kb on + strandat 1917.205 kb on + strandat 1917.220 kb on + strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.220 kb on - strandat 1917.261 kb on - strandat 1917.303 kb on - strand, within B158DRAFT_1819at 1917.355 kb on + strand, within B158DRAFT_1819at 1917.418 kb on - strand, within B158DRAFT_1819at 1917.430 kb on - strand, within B158DRAFT_1819at 1917.488 kb on - strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.528 kb on + strand, within B158DRAFT_1819at 1917.529 kb on + strand, within B158DRAFT_1819at 1917.537 kb on - strand, within B158DRAFT_1819at 1917.691 kb on - strand, within B158DRAFT_1819at 1917.738 kb on + strand, within B158DRAFT_1819at 1917.902 kb on + strand, within B158DRAFT_1819at 1918.028 kb on - strand, within B158DRAFT_1819at 1918.033 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.071 kb on + strand, within B158DRAFT_1819at 1918.079 kb on - strand, within B158DRAFT_1819at 1918.079 kb on - strand, within B158DRAFT_1819at 1918.104 kb on - strand, within B158DRAFT_1819

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
1,916,829 + B158DRAFT_1818 0.22 +0.1
1,916,829 + B158DRAFT_1818 0.22 -0.6
1,916,837 - B158DRAFT_1818 0.24 -0.9
1,916,837 - B158DRAFT_1818 0.24 -0.2
1,916,837 - B158DRAFT_1818 0.24 -0.8
1,916,837 - B158DRAFT_1818 0.24 -0.9
1,916,864 + B158DRAFT_1818 0.31 -1.4
1,917,015 - B158DRAFT_1818 0.71 -1.4
1,917,093 - -0.2
1,917,128 + +2.2
1,917,152 + -0.1
1,917,160 - -0.4
1,917,160 - -1.6
1,917,166 - +2.7
1,917,166 - -1.2
1,917,205 + -0.4
1,917,205 + +0.5
1,917,220 + -0.6
1,917,220 - -1.6
1,917,220 - -1.9
1,917,220 - -0.6
1,917,220 - -1.1
1,917,261 - -0.8
1,917,303 - B158DRAFT_1819 0.13 -0.3
1,917,355 + B158DRAFT_1819 0.17 -0.7
1,917,418 - B158DRAFT_1819 0.22 -1.9
1,917,430 - B158DRAFT_1819 0.22 -0.0
1,917,488 - B158DRAFT_1819 0.27 +0.9
1,917,528 + B158DRAFT_1819 0.30 -0.9
1,917,528 + B158DRAFT_1819 0.30 +0.1
1,917,529 + B158DRAFT_1819 0.30 -0.5
1,917,537 - B158DRAFT_1819 0.30 +2.5
1,917,691 - B158DRAFT_1819 0.42 -0.3
1,917,738 + B158DRAFT_1819 0.45 +1.9
1,917,902 + B158DRAFT_1819 0.58 +0.2
1,918,028 - B158DRAFT_1819 0.67 -0.2
1,918,033 + B158DRAFT_1819 0.67 -0.9
1,918,071 + B158DRAFT_1819 0.70 +0.8
1,918,071 + B158DRAFT_1819 0.70 +3.5
1,918,071 + B158DRAFT_1819 0.70 +0.6
1,918,071 + B158DRAFT_1819 0.70 +1.9
1,918,079 - B158DRAFT_1819 0.71 +1.2
1,918,079 - B158DRAFT_1819 0.71 -0.8
1,918,104 - B158DRAFT_1819 0.73 -0.5

Or see this region's nucleotide sequence