Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1814 and B158DRAFT_1815 are separated by 2 nucleotides B158DRAFT_1815 and B158DRAFT_1816 are separated by 72 nucleotides B158DRAFT_1816 and B158DRAFT_1817 are separated by 15 nucleotides B158DRAFT_1817 and B158DRAFT_1818 are separated by 37 nucleotides B158DRAFT_1818 and B158DRAFT_1819 are separated by 2 nucleotides
B158DRAFT_1814: B158DRAFT_1814 - Predicted enzyme related to lactoylglutathione lyase, at 1,914,213 to 1,914,590
_1814
B158DRAFT_1815: B158DRAFT_1815 - Rhodanese-related sulfurtransferase, at 1,914,593 to 1,915,273
_1815
B158DRAFT_1816: B158DRAFT_1816 - tRNA_Arg_CCT, at 1,915,346 to 1,915,422
_1816
B158DRAFT_1817: B158DRAFT_1817 - seryl-tRNA synthetase (EC 6.1.1.11), at 1,915,438 to 1,916,706
_1817
B158DRAFT_1818: B158DRAFT_1818 - protein CrcB, at 1,916,744 to 1,917,127
_1818
B158DRAFT_1819: B158DRAFT_1819 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 1,917,130 to 1,918,467
_1819
Position (kb)
1915
1916
1917 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1914.484 kb on - strand, within B158DRAFT_1814 at 1914.638 kb on - strand at 1914.645 kb on + strand at 1914.645 kb on + strand at 1914.645 kb on + strand at 1914.653 kb on - strand at 1914.709 kb on + strand, within B158DRAFT_1815 at 1914.744 kb on + strand, within B158DRAFT_1815 at 1914.772 kb on + strand, within B158DRAFT_1815 at 1914.773 kb on + strand, within B158DRAFT_1815 at 1914.781 kb on - strand, within B158DRAFT_1815 at 1914.792 kb on - strand, within B158DRAFT_1815 at 1914.896 kb on + strand, within B158DRAFT_1815 at 1914.901 kb on + strand, within B158DRAFT_1815 at 1914.901 kb on + strand, within B158DRAFT_1815 at 1914.909 kb on - strand, within B158DRAFT_1815 at 1914.925 kb on + strand, within B158DRAFT_1815 at 1914.982 kb on - strand, within B158DRAFT_1815 at 1914.993 kb on - strand, within B158DRAFT_1815 at 1914.993 kb on - strand, within B158DRAFT_1815 at 1915.031 kb on + strand, within B158DRAFT_1815 at 1915.031 kb on + strand, within B158DRAFT_1815 at 1915.031 kb on + strand, within B158DRAFT_1815 at 1915.032 kb on - strand, within B158DRAFT_1815 at 1915.040 kb on + strand, within B158DRAFT_1815 at 1915.048 kb on - strand, within B158DRAFT_1815 at 1915.061 kb on + strand, within B158DRAFT_1815 at 1915.061 kb on + strand, within B158DRAFT_1815 at 1915.077 kb on - strand, within B158DRAFT_1815 at 1915.079 kb on + strand, within B158DRAFT_1815 at 1915.087 kb on - strand, within B158DRAFT_1815 at 1915.087 kb on - strand, within B158DRAFT_1815 at 1915.156 kb on - strand, within B158DRAFT_1815 at 1915.165 kb on - strand, within B158DRAFT_1815 at 1915.165 kb on - strand, within B158DRAFT_1815 at 1915.172 kb on + strand, within B158DRAFT_1815 at 1915.173 kb on - strand, within B158DRAFT_1815 at 1915.173 kb on - strand, within B158DRAFT_1815 at 1915.180 kb on - strand, within B158DRAFT_1815 at 1915.180 kb on - strand, within B158DRAFT_1815 at 1915.327 kb on - strand at 1915.388 kb on - strand, within B158DRAFT_1816 at 1915.388 kb on - strand, within B158DRAFT_1816 at 1915.397 kb on + strand, within B158DRAFT_1816 at 1915.405 kb on - strand, within B158DRAFT_1816 at 1915.405 kb on - strand, within B158DRAFT_1816 at 1915.408 kb on - strand, within B158DRAFT_1816 at 1915.453 kb on + strand at 1916.829 kb on + strand, within B158DRAFT_1818 at 1916.829 kb on + strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.837 kb on - strand, within B158DRAFT_1818 at 1916.864 kb on + strand, within B158DRAFT_1818 at 1917.015 kb on - strand, within B158DRAFT_1818 at 1917.093 kb on - strand at 1917.128 kb on + strand at 1917.152 kb on + strand at 1917.160 kb on - strand at 1917.160 kb on - strand at 1917.166 kb on - strand at 1917.166 kb on - strand at 1917.205 kb on + strand at 1917.205 kb on + strand at 1917.220 kb on + strand at 1917.220 kb on - strand at 1917.220 kb on - strand at 1917.220 kb on - strand at 1917.220 kb on - strand at 1917.261 kb on - strand at 1917.303 kb on - strand, within B158DRAFT_1819 at 1917.355 kb on + strand, within B158DRAFT_1819 at 1917.418 kb on - strand, within B158DRAFT_1819 at 1917.430 kb on - strand, within B158DRAFT_1819 at 1917.488 kb on - strand, within B158DRAFT_1819 at 1917.528 kb on + strand, within B158DRAFT_1819 at 1917.528 kb on + strand, within B158DRAFT_1819 at 1917.529 kb on + strand, within B158DRAFT_1819 at 1917.537 kb on - strand, within B158DRAFT_1819 at 1917.691 kb on - strand, within B158DRAFT_1819
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,914,484 - B158DRAFT_1814 0.72 -0.2 1,914,638 - +0.4 1,914,645 + +0.8 1,914,645 + +5.1 1,914,645 + -1.0 1,914,653 - -0.1 1,914,709 + B158DRAFT_1815 0.17 -0.4 1,914,744 + B158DRAFT_1815 0.22 -0.6 1,914,772 + B158DRAFT_1815 0.26 +4.5 1,914,773 + B158DRAFT_1815 0.26 +0.2 1,914,781 - B158DRAFT_1815 0.28 +1.7 1,914,792 - B158DRAFT_1815 0.29 -0.6 1,914,896 + B158DRAFT_1815 0.44 +0.4 1,914,901 + B158DRAFT_1815 0.45 -0.5 1,914,901 + B158DRAFT_1815 0.45 +0.9 1,914,909 - B158DRAFT_1815 0.46 -0.8 1,914,925 + B158DRAFT_1815 0.49 +0.2 1,914,982 - B158DRAFT_1815 0.57 +1.2 1,914,993 - B158DRAFT_1815 0.59 -2.0 1,914,993 - B158DRAFT_1815 0.59 -1.9 1,915,031 + B158DRAFT_1815 0.64 -1.0 1,915,031 + B158DRAFT_1815 0.64 +1.6 1,915,031 + B158DRAFT_1815 0.64 -0.9 1,915,032 - B158DRAFT_1815 0.64 -0.8 1,915,040 + B158DRAFT_1815 0.66 -0.3 1,915,048 - B158DRAFT_1815 0.67 +0.5 1,915,061 + B158DRAFT_1815 0.69 +0.3 1,915,061 + B158DRAFT_1815 0.69 -0.1 1,915,077 - B158DRAFT_1815 0.71 +0.1 1,915,079 + B158DRAFT_1815 0.71 -1.5 1,915,087 - B158DRAFT_1815 0.73 +1.0 1,915,087 - B158DRAFT_1815 0.73 +1.6 1,915,156 - B158DRAFT_1815 0.83 -2.5 1,915,165 - B158DRAFT_1815 0.84 -0.5 1,915,165 - B158DRAFT_1815 0.84 +0.2 1,915,172 + B158DRAFT_1815 0.85 +0.8 1,915,173 - B158DRAFT_1815 0.85 +0.4 1,915,173 - B158DRAFT_1815 0.85 -0.9 1,915,180 - B158DRAFT_1815 0.86 +0.4 1,915,180 - B158DRAFT_1815 0.86 -2.2 1,915,327 - -0.4 1,915,388 - B158DRAFT_1816 0.55 -0.2 1,915,388 - B158DRAFT_1816 0.55 -2.0 1,915,397 + B158DRAFT_1816 0.66 -0.4 1,915,405 - B158DRAFT_1816 0.77 +0.6 1,915,405 - B158DRAFT_1816 0.77 -1.2 1,915,408 - B158DRAFT_1816 0.81 -0.2 1,915,453 + +1.8 1,916,829 + B158DRAFT_1818 0.22 +0.1 1,916,829 + B158DRAFT_1818 0.22 -0.6 1,916,837 - B158DRAFT_1818 0.24 -0.9 1,916,837 - B158DRAFT_1818 0.24 -0.2 1,916,837 - B158DRAFT_1818 0.24 -0.8 1,916,837 - B158DRAFT_1818 0.24 -0.9 1,916,864 + B158DRAFT_1818 0.31 -1.4 1,917,015 - B158DRAFT_1818 0.71 -1.4 1,917,093 - -0.2 1,917,128 + +2.2 1,917,152 + -0.1 1,917,160 - -0.4 1,917,160 - -1.6 1,917,166 - +2.7 1,917,166 - -1.2 1,917,205 + -0.4 1,917,205 + +0.5 1,917,220 + -0.6 1,917,220 - -1.6 1,917,220 - -1.9 1,917,220 - -0.6 1,917,220 - -1.1 1,917,261 - -0.8 1,917,303 - B158DRAFT_1819 0.13 -0.3 1,917,355 + B158DRAFT_1819 0.17 -0.7 1,917,418 - B158DRAFT_1819 0.22 -1.9 1,917,430 - B158DRAFT_1819 0.22 -0.0 1,917,488 - B158DRAFT_1819 0.27 +0.9 1,917,528 + B158DRAFT_1819 0.30 -0.9 1,917,528 + B158DRAFT_1819 0.30 +0.1 1,917,529 + B158DRAFT_1819 0.30 -0.5 1,917,537 - B158DRAFT_1819 0.30 +2.5 1,917,691 - B158DRAFT_1819 0.42 -0.3
Or see this region's nucleotide sequence