Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1771 and B158DRAFT_1772 are separated by 75 nucleotides B158DRAFT_1772 and B158DRAFT_1773 are separated by 9 nucleotides B158DRAFT_1773 and B158DRAFT_1774 are separated by 29 nucleotides
B158DRAFT_1771: B158DRAFT_1771 - ribonuclease, Rne/Rng family, at 1,853,481 to 1,856,294
_1771
B158DRAFT_1772: B158DRAFT_1772 - Fructose-2,6-bisphosphatase, at 1,856,370 to 1,856,936
_1772
B158DRAFT_1773: B158DRAFT_1773 - DNA ligase, NAD-dependent, at 1,856,946 to 1,858,961
_1773
B158DRAFT_1774: B158DRAFT_1774 - cell division protein ZipA, at 1,858,991 to 1,860,016
_1774
Position (kb)
1856
1857
1858
1859 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 1856.051 kb on + strand at 1856.051 kb on + strand at 1856.059 kb on - strand at 1856.068 kb on + strand at 1856.179 kb on + strand at 1856.265 kb on + strand at 1856.302 kb on + strand at 1856.302 kb on + strand at 1856.497 kb on - strand, within B158DRAFT_1772 at 1856.530 kb on + strand, within B158DRAFT_1772 at 1856.542 kb on + strand, within B158DRAFT_1772 at 1856.550 kb on - strand, within B158DRAFT_1772 at 1856.596 kb on + strand, within B158DRAFT_1772 at 1856.895 kb on + strand at 1859.186 kb on - strand, within B158DRAFT_1774 at 1859.186 kb on - strand, within B158DRAFT_1774 at 1859.186 kb on - strand, within B158DRAFT_1774 at 1859.249 kb on - strand, within B158DRAFT_1774 at 1859.250 kb on - strand, within B158DRAFT_1774 at 1859.272 kb on - strand, within B158DRAFT_1774 at 1859.378 kb on - strand, within B158DRAFT_1774 at 1859.498 kb on - strand, within B158DRAFT_1774 at 1859.498 kb on - strand, within B158DRAFT_1774 at 1859.549 kb on - strand, within B158DRAFT_1774
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,856,051 + +1.2 1,856,051 + -1.1 1,856,059 - -0.5 1,856,068 + +1.1 1,856,179 + +0.2 1,856,265 + -0.0 1,856,302 + -1.9 1,856,302 + +1.6 1,856,497 - B158DRAFT_1772 0.22 -0.6 1,856,530 + B158DRAFT_1772 0.28 -1.5 1,856,542 + B158DRAFT_1772 0.30 -0.6 1,856,550 - B158DRAFT_1772 0.32 -0.1 1,856,596 + B158DRAFT_1772 0.40 -1.8 1,856,895 + +0.3 1,859,186 - B158DRAFT_1774 0.19 +7.2 1,859,186 - B158DRAFT_1774 0.19 +6.6 1,859,186 - B158DRAFT_1774 0.19 +7.5 1,859,249 - B158DRAFT_1774 0.25 +7.2 1,859,250 - B158DRAFT_1774 0.25 +5.7 1,859,272 - B158DRAFT_1774 0.27 +7.1 1,859,378 - B158DRAFT_1774 0.38 +4.9 1,859,498 - B158DRAFT_1774 0.49 +5.7 1,859,498 - B158DRAFT_1774 0.49 +6.2 1,859,549 - B158DRAFT_1774 0.54 +6.2
Or see this region's nucleotide sequence