Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1743 and B158DRAFT_1744 are separated by 184 nucleotides B158DRAFT_1744 and B158DRAFT_1745 are separated by 51 nucleotides B158DRAFT_1745 and B158DRAFT_1746 are separated by 27 nucleotides
B158DRAFT_1743: B158DRAFT_1743 - Subtilisin-like serine proteases, at 1,824,109 to 1,826,169
_1743
B158DRAFT_1744: B158DRAFT_1744 - Predicted Zn-dependent peptidases, at 1,826,354 to 1,829,209
_1744
B158DRAFT_1745: B158DRAFT_1745 - hydrolase, TatD family, at 1,829,261 to 1,830,055
_1745
B158DRAFT_1746: B158DRAFT_1746 - Tfp pilus assembly protein PilZ, at 1,830,083 to 1,830,433
_1746
Position (kb)
1826
1827
1828
1829
1830 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1825.402 kb on + strand, within B158DRAFT_1743 at 1825.407 kb on + strand, within B158DRAFT_1743 at 1825.434 kb on - strand, within B158DRAFT_1743 at 1825.501 kb on + strand, within B158DRAFT_1743 at 1825.567 kb on + strand, within B158DRAFT_1743 at 1825.584 kb on + strand, within B158DRAFT_1743 at 1825.632 kb on - strand, within B158DRAFT_1743 at 1825.648 kb on + strand, within B158DRAFT_1743 at 1825.648 kb on + strand, within B158DRAFT_1743 at 1825.648 kb on + strand, within B158DRAFT_1743 at 1825.648 kb on + strand, within B158DRAFT_1743 at 1825.648 kb on + strand, within B158DRAFT_1743 at 1825.656 kb on - strand, within B158DRAFT_1743 at 1825.656 kb on - strand, within B158DRAFT_1743 at 1825.656 kb on - strand, within B158DRAFT_1743 at 1825.679 kb on - strand, within B158DRAFT_1743 at 1825.738 kb on + strand, within B158DRAFT_1743 at 1825.738 kb on + strand, within B158DRAFT_1743 at 1825.738 kb on - strand, within B158DRAFT_1743 at 1825.746 kb on - strand, within B158DRAFT_1743 at 1825.771 kb on + strand, within B158DRAFT_1743 at 1825.781 kb on + strand, within B158DRAFT_1743 at 1825.878 kb on + strand, within B158DRAFT_1743 at 1825.907 kb on + strand, within B158DRAFT_1743 at 1825.944 kb on - strand, within B158DRAFT_1743 at 1825.944 kb on - strand, within B158DRAFT_1743 at 1825.960 kb on - strand, within B158DRAFT_1743 at 1825.999 kb on - strand at 1826.030 kb on - strand at 1826.079 kb on - strand at 1826.090 kb on - strand at 1826.170 kb on + strand at 1826.222 kb on + strand at 1826.225 kb on - strand at 1826.255 kb on + strand at 1826.415 kb on + strand at 1826.417 kb on + strand at 1826.417 kb on + strand at 1826.423 kb on - strand at 1826.451 kb on - strand at 1826.453 kb on + strand at 1826.514 kb on + strand at 1826.520 kb on + strand at 1826.520 kb on + strand at 1826.522 kb on - strand at 1826.522 kb on - strand at 1826.528 kb on - strand at 1826.729 kb on - strand, within B158DRAFT_1744 at 1826.761 kb on + strand, within B158DRAFT_1744 at 1826.774 kb on + strand, within B158DRAFT_1744 at 1826.782 kb on - strand, within B158DRAFT_1744 at 1826.804 kb on + strand, within B158DRAFT_1744 at 1826.805 kb on + strand, within B158DRAFT_1744 at 1826.805 kb on + strand, within B158DRAFT_1744 at 1826.805 kb on + strand, within B158DRAFT_1744 at 1826.805 kb on + strand, within B158DRAFT_1744 at 1826.805 kb on + strand, within B158DRAFT_1744 at 1826.812 kb on - strand, within B158DRAFT_1744 at 1826.813 kb on - strand, within B158DRAFT_1744 at 1826.813 kb on - strand, within B158DRAFT_1744 at 1826.867 kb on + strand, within B158DRAFT_1744 at 1826.870 kb on - strand, within B158DRAFT_1744 at 1826.918 kb on - strand, within B158DRAFT_1744 at 1826.918 kb on - strand, within B158DRAFT_1744 at 1827.025 kb on + strand, within B158DRAFT_1744 at 1827.141 kb on + strand, within B158DRAFT_1744 at 1827.183 kb on - strand, within B158DRAFT_1744 at 1827.277 kb on + strand, within B158DRAFT_1744 at 1827.277 kb on + strand, within B158DRAFT_1744 at 1827.277 kb on + strand, within B158DRAFT_1744 at 1827.300 kb on + strand, within B158DRAFT_1744 at 1827.300 kb on + strand, within B158DRAFT_1744 at 1827.300 kb on + strand, within B158DRAFT_1744 at 1827.300 kb on + strand, within B158DRAFT_1744 at 1827.300 kb on + strand, within B158DRAFT_1744 at 1827.300 kb on + strand, within B158DRAFT_1744 at 1827.308 kb on - strand, within B158DRAFT_1744 at 1827.308 kb on - strand, within B158DRAFT_1744 at 1827.308 kb on - strand, within B158DRAFT_1744 at 1827.308 kb on - strand, within B158DRAFT_1744 at 1827.392 kb on + strand, within B158DRAFT_1744 at 1827.400 kb on - strand, within B158DRAFT_1744 at 1827.536 kb on + strand, within B158DRAFT_1744 at 1827.539 kb on - strand, within B158DRAFT_1744 at 1827.544 kb on - strand, within B158DRAFT_1744 at 1827.544 kb on - strand, within B158DRAFT_1744 at 1827.844 kb on + strand, within B158DRAFT_1744 at 1827.852 kb on - strand, within B158DRAFT_1744 at 1827.866 kb on + strand, within B158DRAFT_1744 at 1827.874 kb on - strand, within B158DRAFT_1744 at 1827.913 kb on - strand, within B158DRAFT_1744 at 1828.047 kb on + strand, within B158DRAFT_1744 at 1828.047 kb on + strand, within B158DRAFT_1744 at 1828.143 kb on - strand, within B158DRAFT_1744 at 1828.143 kb on - strand, within B158DRAFT_1744 at 1828.204 kb on - strand, within B158DRAFT_1744 at 1828.247 kb on + strand, within B158DRAFT_1744 at 1828.247 kb on + strand, within B158DRAFT_1744 at 1828.321 kb on + strand, within B158DRAFT_1744 at 1828.321 kb on + strand, within B158DRAFT_1744 at 1828.435 kb on + strand, within B158DRAFT_1744 at 1828.578 kb on + strand, within B158DRAFT_1744 at 1828.640 kb on - strand, within B158DRAFT_1744 at 1828.660 kb on + strand, within B158DRAFT_1744 at 1828.660 kb on + strand, within B158DRAFT_1744 at 1828.668 kb on - strand, within B158DRAFT_1744 at 1828.827 kb on - strand, within B158DRAFT_1744 at 1828.836 kb on - strand, within B158DRAFT_1744 at 1828.868 kb on + strand, within B158DRAFT_1744 at 1828.868 kb on + strand, within B158DRAFT_1744 at 1828.876 kb on - strand, within B158DRAFT_1744 at 1828.884 kb on + strand, within B158DRAFT_1744 at 1828.900 kb on - strand, within B158DRAFT_1744 at 1829.025 kb on + strand at 1829.025 kb on + strand at 1829.223 kb on - strand at 1829.345 kb on + strand, within B158DRAFT_1745 at 1829.353 kb on - strand, within B158DRAFT_1745 at 1829.482 kb on - strand, within B158DRAFT_1745 at 1829.543 kb on + strand, within B158DRAFT_1745 at 1829.551 kb on - strand, within B158DRAFT_1745 at 1829.575 kb on + strand, within B158DRAFT_1745 at 1829.575 kb on + strand, within B158DRAFT_1745 at 1829.575 kb on + strand, within B158DRAFT_1745 at 1829.583 kb on - strand, within B158DRAFT_1745 at 1829.583 kb on - strand, within B158DRAFT_1745 at 1829.585 kb on + strand, within B158DRAFT_1745 at 1829.585 kb on + strand, within B158DRAFT_1745 at 1829.593 kb on - strand, within B158DRAFT_1745 at 1829.593 kb on - strand, within B158DRAFT_1745 at 1829.593 kb on - strand, within B158DRAFT_1745 at 1829.593 kb on - strand, within B158DRAFT_1745 at 1829.593 kb on - strand, within B158DRAFT_1745 at 1829.647 kb on - strand, within B158DRAFT_1745 at 1829.657 kb on + strand, within B158DRAFT_1745 at 1829.657 kb on + strand, within B158DRAFT_1745 at 1829.765 kb on - strand, within B158DRAFT_1745 at 1829.790 kb on + strand, within B158DRAFT_1745 at 1829.822 kb on + strand, within B158DRAFT_1745 at 1829.829 kb on - strand, within B158DRAFT_1745 at 1829.850 kb on - strand, within B158DRAFT_1745 at 1829.869 kb on - strand, within B158DRAFT_1745 at 1829.919 kb on + strand, within B158DRAFT_1745 at 1829.919 kb on + strand, within B158DRAFT_1745 at 1829.927 kb on - strand, within B158DRAFT_1745 at 1829.937 kb on - strand, within B158DRAFT_1745 at 1829.937 kb on - strand, within B158DRAFT_1745 at 1829.951 kb on - strand, within B158DRAFT_1745 at 1829.953 kb on + strand, within B158DRAFT_1745 at 1829.978 kb on + strand at 1829.978 kb on + strand at 1829.985 kb on + strand at 1830.016 kb on + strand at 1830.016 kb on + strand at 1830.024 kb on - strand at 1830.028 kb on + strand at 1830.046 kb on - strand at 1830.080 kb on + strand at 1830.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,825,402 + B158DRAFT_1743 0.63 -1.0 1,825,407 + B158DRAFT_1743 0.63 -0.1 1,825,434 - B158DRAFT_1743 0.64 -0.4 1,825,501 + B158DRAFT_1743 0.68 -1.9 1,825,567 + B158DRAFT_1743 0.71 -0.5 1,825,584 + B158DRAFT_1743 0.72 +0.2 1,825,632 - B158DRAFT_1743 0.74 +0.6 1,825,648 + B158DRAFT_1743 0.75 -0.7 1,825,648 + B158DRAFT_1743 0.75 +0.3 1,825,648 + B158DRAFT_1743 0.75 +0.1 1,825,648 + B158DRAFT_1743 0.75 -0.9 1,825,648 + B158DRAFT_1743 0.75 -1.3 1,825,656 - B158DRAFT_1743 0.75 -1.1 1,825,656 - B158DRAFT_1743 0.75 -0.8 1,825,656 - B158DRAFT_1743 0.75 -2.7 1,825,679 - B158DRAFT_1743 0.76 -0.4 1,825,738 + B158DRAFT_1743 0.79 +0.2 1,825,738 + B158DRAFT_1743 0.79 -0.2 1,825,738 - B158DRAFT_1743 0.79 +0.4 1,825,746 - B158DRAFT_1743 0.79 -2.0 1,825,771 + B158DRAFT_1743 0.81 -0.6 1,825,781 + B158DRAFT_1743 0.81 -0.8 1,825,878 + B158DRAFT_1743 0.86 -0.3 1,825,907 + B158DRAFT_1743 0.87 +1.2 1,825,944 - B158DRAFT_1743 0.89 -0.5 1,825,944 - B158DRAFT_1743 0.89 +1.3 1,825,960 - B158DRAFT_1743 0.90 -2.6 1,825,999 - -0.8 1,826,030 - -1.1 1,826,079 - +0.2 1,826,090 - -0.5 1,826,170 + +0.1 1,826,222 + +0.5 1,826,225 - +0.2 1,826,255 + +0.9 1,826,415 + +1.3 1,826,417 + -1.2 1,826,417 + +1.8 1,826,423 - -0.8 1,826,451 - -0.4 1,826,453 + -1.6 1,826,514 + +0.3 1,826,520 + +0.8 1,826,520 + -1.5 1,826,522 - -2.0 1,826,522 - -0.8 1,826,528 - -0.9 1,826,729 - B158DRAFT_1744 0.13 -1.2 1,826,761 + B158DRAFT_1744 0.14 -1.0 1,826,774 + B158DRAFT_1744 0.15 +1.4 1,826,782 - B158DRAFT_1744 0.15 -1.2 1,826,804 + B158DRAFT_1744 0.16 -0.5 1,826,805 + B158DRAFT_1744 0.16 -0.2 1,826,805 + B158DRAFT_1744 0.16 -0.1 1,826,805 + B158DRAFT_1744 0.16 -0.3 1,826,805 + B158DRAFT_1744 0.16 -0.5 1,826,805 + B158DRAFT_1744 0.16 -2.5 1,826,812 - B158DRAFT_1744 0.16 -1.7 1,826,813 - B158DRAFT_1744 0.16 -2.4 1,826,813 - B158DRAFT_1744 0.16 -1.1 1,826,867 + B158DRAFT_1744 0.18 -1.9 1,826,870 - B158DRAFT_1744 0.18 +0.4 1,826,918 - B158DRAFT_1744 0.20 +0.2 1,826,918 - B158DRAFT_1744 0.20 +0.1 1,827,025 + B158DRAFT_1744 0.23 -0.7 1,827,141 + B158DRAFT_1744 0.28 -2.3 1,827,183 - B158DRAFT_1744 0.29 -1.7 1,827,277 + B158DRAFT_1744 0.32 -0.1 1,827,277 + B158DRAFT_1744 0.32 -0.7 1,827,277 + B158DRAFT_1744 0.32 +1.2 1,827,300 + B158DRAFT_1744 0.33 +2.1 1,827,300 + B158DRAFT_1744 0.33 +1.1 1,827,300 + B158DRAFT_1744 0.33 -0.1 1,827,300 + B158DRAFT_1744 0.33 -0.4 1,827,300 + B158DRAFT_1744 0.33 -0.1 1,827,300 + B158DRAFT_1744 0.33 -0.5 1,827,308 - B158DRAFT_1744 0.33 -0.4 1,827,308 - B158DRAFT_1744 0.33 +1.2 1,827,308 - B158DRAFT_1744 0.33 -1.5 1,827,308 - B158DRAFT_1744 0.33 +0.5 1,827,392 + B158DRAFT_1744 0.36 -0.2 1,827,400 - B158DRAFT_1744 0.37 -0.1 1,827,536 + B158DRAFT_1744 0.41 -1.4 1,827,539 - B158DRAFT_1744 0.41 -0.2 1,827,544 - B158DRAFT_1744 0.42 -0.7 1,827,544 - B158DRAFT_1744 0.42 +1.0 1,827,844 + B158DRAFT_1744 0.52 +0.4 1,827,852 - B158DRAFT_1744 0.52 -0.4 1,827,866 + B158DRAFT_1744 0.53 -1.4 1,827,874 - B158DRAFT_1744 0.53 -1.5 1,827,913 - B158DRAFT_1744 0.55 -0.8 1,828,047 + B158DRAFT_1744 0.59 +0.4 1,828,047 + B158DRAFT_1744 0.59 -1.1 1,828,143 - B158DRAFT_1744 0.63 -1.0 1,828,143 - B158DRAFT_1744 0.63 +0.1 1,828,204 - B158DRAFT_1744 0.65 -1.8 1,828,247 + B158DRAFT_1744 0.66 -0.0 1,828,247 + B158DRAFT_1744 0.66 +0.9 1,828,321 + B158DRAFT_1744 0.69 -1.5 1,828,321 + B158DRAFT_1744 0.69 +0.3 1,828,435 + B158DRAFT_1744 0.73 -1.1 1,828,578 + B158DRAFT_1744 0.78 +0.3 1,828,640 - B158DRAFT_1744 0.80 -2.1 1,828,660 + B158DRAFT_1744 0.81 -0.3 1,828,660 + B158DRAFT_1744 0.81 -0.5 1,828,668 - B158DRAFT_1744 0.81 -2.3 1,828,827 - B158DRAFT_1744 0.87 -1.2 1,828,836 - B158DRAFT_1744 0.87 -1.0 1,828,868 + B158DRAFT_1744 0.88 -1.5 1,828,868 + B158DRAFT_1744 0.88 -0.7 1,828,876 - B158DRAFT_1744 0.88 -0.2 1,828,884 + B158DRAFT_1744 0.89 -1.0 1,828,900 - B158DRAFT_1744 0.89 -0.9 1,829,025 + -0.1 1,829,025 + -0.5 1,829,223 - +0.7 1,829,345 + B158DRAFT_1745 0.11 +0.4 1,829,353 - B158DRAFT_1745 0.12 +0.2 1,829,482 - B158DRAFT_1745 0.28 -1.5 1,829,543 + B158DRAFT_1745 0.35 -0.4 1,829,551 - B158DRAFT_1745 0.36 -0.6 1,829,575 + B158DRAFT_1745 0.39 -2.0 1,829,575 + B158DRAFT_1745 0.39 -1.2 1,829,575 + B158DRAFT_1745 0.39 -0.1 1,829,583 - B158DRAFT_1745 0.41 -0.9 1,829,583 - B158DRAFT_1745 0.41 -0.5 1,829,585 + B158DRAFT_1745 0.41 -0.2 1,829,585 + B158DRAFT_1745 0.41 -0.4 1,829,593 - B158DRAFT_1745 0.42 +0.5 1,829,593 - B158DRAFT_1745 0.42 -0.3 1,829,593 - B158DRAFT_1745 0.42 -2.3 1,829,593 - B158DRAFT_1745 0.42 -0.8 1,829,593 - B158DRAFT_1745 0.42 -0.4 1,829,647 - B158DRAFT_1745 0.49 -1.0 1,829,657 + B158DRAFT_1745 0.50 -1.4 1,829,657 + B158DRAFT_1745 0.50 +4.3 1,829,765 - B158DRAFT_1745 0.63 -0.9 1,829,790 + B158DRAFT_1745 0.67 +2.0 1,829,822 + B158DRAFT_1745 0.71 -0.7 1,829,829 - B158DRAFT_1745 0.71 +0.3 1,829,850 - B158DRAFT_1745 0.74 +0.2 1,829,869 - B158DRAFT_1745 0.76 -1.2 1,829,919 + B158DRAFT_1745 0.83 -0.5 1,829,919 + B158DRAFT_1745 0.83 -1.0 1,829,927 - B158DRAFT_1745 0.84 -1.3 1,829,937 - B158DRAFT_1745 0.85 -1.3 1,829,937 - B158DRAFT_1745 0.85 +0.4 1,829,951 - B158DRAFT_1745 0.87 +0.3 1,829,953 + B158DRAFT_1745 0.87 -0.2 1,829,978 + -2.1 1,829,978 + -2.5 1,829,985 + -0.5 1,830,016 + -0.3 1,830,016 + -0.3 1,830,024 - -1.0 1,830,028 + -1.6 1,830,046 - -0.4 1,830,080 + -0.8 1,830,088 - -0.1
Or see this region's nucleotide sequence