Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1664 and B158DRAFT_1665 overlap by 4 nucleotides B158DRAFT_1665 and B158DRAFT_1666 are separated by 50 nucleotides B158DRAFT_1666 and B158DRAFT_1667 are separated by 15 nucleotides
B158DRAFT_1664: B158DRAFT_1664 - copper-resistance protein, CopA family, at 1,735,474 to 1,737,321
_1664
B158DRAFT_1665: B158DRAFT_1665 - Uncharacterized protein involved in copper resistance, at 1,737,318 to 1,738,181
_1665
B158DRAFT_1666: B158DRAFT_1666 - Calcium/calmodulin dependent protein kinase II Association., at 1,738,232 to 1,738,939
_1666
B158DRAFT_1667: B158DRAFT_1667 - hypothetical protein, at 1,738,955 to 1,739,548
_1667
Position (kb)
1737
1738
1739 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1736.380 kb on - strand, within B158DRAFT_1664 at 1736.390 kb on - strand, within B158DRAFT_1664 at 1736.403 kb on + strand, within B158DRAFT_1664 at 1736.405 kb on + strand, within B158DRAFT_1664 at 1736.411 kb on + strand, within B158DRAFT_1664 at 1736.411 kb on + strand, within B158DRAFT_1664 at 1736.413 kb on - strand, within B158DRAFT_1664 at 1736.419 kb on - strand, within B158DRAFT_1664 at 1736.436 kb on + strand, within B158DRAFT_1664 at 1736.452 kb on + strand, within B158DRAFT_1664 at 1736.460 kb on - strand, within B158DRAFT_1664 at 1736.460 kb on - strand, within B158DRAFT_1664 at 1736.460 kb on - strand, within B158DRAFT_1664 at 1736.464 kb on + strand, within B158DRAFT_1664 at 1736.469 kb on + strand, within B158DRAFT_1664 at 1736.469 kb on + strand, within B158DRAFT_1664 at 1736.469 kb on + strand, within B158DRAFT_1664 at 1736.472 kb on - strand, within B158DRAFT_1664 at 1736.475 kb on + strand, within B158DRAFT_1664 at 1736.475 kb on + strand, within B158DRAFT_1664 at 1736.477 kb on - strand, within B158DRAFT_1664 at 1736.477 kb on - strand, within B158DRAFT_1664 at 1736.494 kb on - strand, within B158DRAFT_1664 at 1736.518 kb on + strand, within B158DRAFT_1664 at 1736.522 kb on + strand, within B158DRAFT_1664 at 1736.539 kb on + strand, within B158DRAFT_1664 at 1736.539 kb on + strand, within B158DRAFT_1664 at 1736.545 kb on + strand, within B158DRAFT_1664 at 1736.547 kb on - strand, within B158DRAFT_1664 at 1736.567 kb on + strand, within B158DRAFT_1664 at 1736.593 kb on - strand, within B158DRAFT_1664 at 1736.620 kb on - strand, within B158DRAFT_1664 at 1736.626 kb on + strand, within B158DRAFT_1664 at 1736.646 kb on + strand, within B158DRAFT_1664 at 1736.646 kb on + strand, within B158DRAFT_1664 at 1736.666 kb on + strand, within B158DRAFT_1664 at 1736.674 kb on - strand, within B158DRAFT_1664 at 1736.697 kb on + strand, within B158DRAFT_1664 at 1736.771 kb on + strand, within B158DRAFT_1664 at 1736.771 kb on + strand, within B158DRAFT_1664 at 1736.817 kb on + strand, within B158DRAFT_1664 at 1736.825 kb on - strand, within B158DRAFT_1664 at 1736.837 kb on + strand, within B158DRAFT_1664 at 1736.853 kb on + strand, within B158DRAFT_1664 at 1736.855 kb on - strand, within B158DRAFT_1664 at 1736.863 kb on + strand, within B158DRAFT_1664 at 1736.863 kb on + strand, within B158DRAFT_1664 at 1736.866 kb on - strand, within B158DRAFT_1664 at 1736.871 kb on - strand, within B158DRAFT_1664 at 1736.871 kb on - strand, within B158DRAFT_1664 at 1736.887 kb on + strand, within B158DRAFT_1664 at 1736.896 kb on - strand, within B158DRAFT_1664 at 1736.897 kb on + strand, within B158DRAFT_1664 at 1736.897 kb on + strand, within B158DRAFT_1664 at 1736.901 kb on + strand, within B158DRAFT_1664 at 1736.903 kb on + strand, within B158DRAFT_1664 at 1736.961 kb on + strand, within B158DRAFT_1664 at 1736.992 kb on - strand, within B158DRAFT_1664 at 1737.032 kb on + strand, within B158DRAFT_1664 at 1737.032 kb on + strand, within B158DRAFT_1664 at 1737.032 kb on + strand, within B158DRAFT_1664 at 1737.063 kb on - strand, within B158DRAFT_1664 at 1737.063 kb on - strand, within B158DRAFT_1664 at 1737.108 kb on + strand, within B158DRAFT_1664 at 1737.171 kb on + strand at 1737.179 kb on - strand at 1737.201 kb on - strand at 1737.203 kb on + strand at 1737.213 kb on + strand at 1737.216 kb on - strand at 1737.221 kb on - strand at 1737.231 kb on - strand at 1737.233 kb on + strand at 1737.236 kb on - strand at 1737.243 kb on + strand at 1737.249 kb on - strand at 1737.279 kb on - strand at 1737.279 kb on - strand at 1737.300 kb on - strand at 1737.323 kb on + strand at 1737.323 kb on + strand at 1737.331 kb on - strand at 1737.364 kb on - strand at 1737.366 kb on + strand at 1737.366 kb on + strand at 1737.366 kb on + strand at 1737.366 kb on + strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.374 kb on - strand at 1737.413 kb on + strand, within B158DRAFT_1665 at 1737.413 kb on + strand, within B158DRAFT_1665 at 1737.443 kb on + strand, within B158DRAFT_1665 at 1737.485 kb on + strand, within B158DRAFT_1665 at 1737.493 kb on + strand, within B158DRAFT_1665 at 1737.493 kb on + strand, within B158DRAFT_1665 at 1737.493 kb on + strand, within B158DRAFT_1665 at 1737.501 kb on - strand, within B158DRAFT_1665 at 1737.501 kb on - strand, within B158DRAFT_1665 at 1737.501 kb on - strand, within B158DRAFT_1665 at 1737.501 kb on - strand, within B158DRAFT_1665 at 1737.501 kb on - strand, within B158DRAFT_1665 at 1737.501 kb on - strand, within B158DRAFT_1665 at 1737.511 kb on - strand, within B158DRAFT_1665 at 1737.513 kb on - strand, within B158DRAFT_1665 at 1737.517 kb on + strand, within B158DRAFT_1665 at 1737.525 kb on - strand, within B158DRAFT_1665 at 1737.656 kb on - strand, within B158DRAFT_1665 at 1737.695 kb on - strand, within B158DRAFT_1665 at 1737.695 kb on - strand, within B158DRAFT_1665 at 1737.710 kb on - strand, within B158DRAFT_1665 at 1737.717 kb on + strand, within B158DRAFT_1665 at 1737.722 kb on + strand, within B158DRAFT_1665 at 1737.722 kb on + strand, within B158DRAFT_1665 at 1737.730 kb on - strand, within B158DRAFT_1665 at 1737.730 kb on - strand, within B158DRAFT_1665 at 1737.730 kb on - strand, within B158DRAFT_1665 at 1737.792 kb on + strand, within B158DRAFT_1665 at 1737.792 kb on + strand, within B158DRAFT_1665 at 1737.792 kb on + strand, within B158DRAFT_1665 at 1737.792 kb on + strand, within B158DRAFT_1665 at 1737.813 kb on + strand, within B158DRAFT_1665 at 1737.829 kb on + strand, within B158DRAFT_1665 at 1737.829 kb on + strand, within B158DRAFT_1665 at 1737.829 kb on + strand, within B158DRAFT_1665 at 1737.829 kb on + strand, within B158DRAFT_1665 at 1737.829 kb on + strand, within B158DRAFT_1665 at 1737.829 kb on + strand, within B158DRAFT_1665 at 1737.837 kb on - strand, within B158DRAFT_1665 at 1737.837 kb on - strand, within B158DRAFT_1665 at 1737.837 kb on - strand, within B158DRAFT_1665 at 1737.837 kb on - strand, within B158DRAFT_1665 at 1737.844 kb on - strand, within B158DRAFT_1665 at 1737.916 kb on + strand, within B158DRAFT_1665 at 1737.921 kb on + strand, within B158DRAFT_1665 at 1737.924 kb on - strand, within B158DRAFT_1665 at 1737.950 kb on - strand, within B158DRAFT_1665 at 1737.950 kb on - strand, within B158DRAFT_1665 at 1737.950 kb on - strand, within B158DRAFT_1665 at 1737.955 kb on - strand, within B158DRAFT_1665 at 1737.965 kb on - strand, within B158DRAFT_1665 at 1737.999 kb on + strand, within B158DRAFT_1665 at 1738.000 kb on + strand, within B158DRAFT_1665 at 1738.000 kb on + strand, within B158DRAFT_1665 at 1738.008 kb on - strand, within B158DRAFT_1665 at 1738.008 kb on - strand, within B158DRAFT_1665 at 1738.008 kb on - strand, within B158DRAFT_1665 at 1738.093 kb on + strand, within B158DRAFT_1665 at 1738.112 kb on + strand at 1738.136 kb on - strand at 1738.230 kb on - strand at 1738.264 kb on + strand at 1738.292 kb on + strand at 1738.344 kb on + strand, within B158DRAFT_1666 at 1738.405 kb on - strand, within B158DRAFT_1666 at 1738.417 kb on + strand, within B158DRAFT_1666 at 1738.425 kb on - strand, within B158DRAFT_1666 at 1738.519 kb on + strand, within B158DRAFT_1666 at 1738.519 kb on + strand, within B158DRAFT_1666 at 1738.519 kb on + strand, within B158DRAFT_1666 at 1738.519 kb on + strand, within B158DRAFT_1666 at 1738.519 kb on + strand, within B158DRAFT_1666 at 1738.527 kb on - strand, within B158DRAFT_1666 at 1738.527 kb on - strand, within B158DRAFT_1666 at 1738.527 kb on - strand, within B158DRAFT_1666 at 1738.527 kb on - strand, within B158DRAFT_1666 at 1738.559 kb on - strand, within B158DRAFT_1666 at 1738.703 kb on + strand, within B158DRAFT_1666 at 1739.016 kb on + strand, within B158DRAFT_1667 at 1739.024 kb on - strand, within B158DRAFT_1667 at 1739.055 kb on + strand, within B158DRAFT_1667 at 1739.071 kb on + strand, within B158DRAFT_1667 at 1739.118 kb on - strand, within B158DRAFT_1667 at 1739.133 kb on - strand, within B158DRAFT_1667
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,736,380 - B158DRAFT_1664 0.49 -0.3 1,736,390 - B158DRAFT_1664 0.50 -0.7 1,736,403 + B158DRAFT_1664 0.50 -1.7 1,736,405 + B158DRAFT_1664 0.50 -0.8 1,736,411 + B158DRAFT_1664 0.51 +1.0 1,736,411 + B158DRAFT_1664 0.51 -0.5 1,736,413 - B158DRAFT_1664 0.51 +0.8 1,736,419 - B158DRAFT_1664 0.51 -3.1 1,736,436 + B158DRAFT_1664 0.52 -0.2 1,736,452 + B158DRAFT_1664 0.53 -0.5 1,736,460 - B158DRAFT_1664 0.53 -0.0 1,736,460 - B158DRAFT_1664 0.53 -0.5 1,736,460 - B158DRAFT_1664 0.53 -0.7 1,736,464 + B158DRAFT_1664 0.54 -2.0 1,736,469 + B158DRAFT_1664 0.54 -1.7 1,736,469 + B158DRAFT_1664 0.54 -0.9 1,736,469 + B158DRAFT_1664 0.54 +0.9 1,736,472 - B158DRAFT_1664 0.54 -1.8 1,736,475 + B158DRAFT_1664 0.54 -1.3 1,736,475 + B158DRAFT_1664 0.54 -0.3 1,736,477 - B158DRAFT_1664 0.54 +1.5 1,736,477 - B158DRAFT_1664 0.54 +0.0 1,736,494 - B158DRAFT_1664 0.55 -0.7 1,736,518 + B158DRAFT_1664 0.56 +0.5 1,736,522 + B158DRAFT_1664 0.57 -0.6 1,736,539 + B158DRAFT_1664 0.58 -0.3 1,736,539 + B158DRAFT_1664 0.58 +0.4 1,736,545 + B158DRAFT_1664 0.58 +0.3 1,736,547 - B158DRAFT_1664 0.58 -0.3 1,736,567 + B158DRAFT_1664 0.59 -0.6 1,736,593 - B158DRAFT_1664 0.61 -1.0 1,736,620 - B158DRAFT_1664 0.62 -0.3 1,736,626 + B158DRAFT_1664 0.62 -0.2 1,736,646 + B158DRAFT_1664 0.63 +1.0 1,736,646 + B158DRAFT_1664 0.63 -1.0 1,736,666 + B158DRAFT_1664 0.65 -0.0 1,736,674 - B158DRAFT_1664 0.65 -0.1 1,736,697 + B158DRAFT_1664 0.66 +0.4 1,736,771 + B158DRAFT_1664 0.70 -0.1 1,736,771 + B158DRAFT_1664 0.70 +0.1 1,736,817 + B158DRAFT_1664 0.73 -1.1 1,736,825 - B158DRAFT_1664 0.73 -0.6 1,736,837 + B158DRAFT_1664 0.74 +1.4 1,736,853 + B158DRAFT_1664 0.75 -1.5 1,736,855 - B158DRAFT_1664 0.75 -2.1 1,736,863 + B158DRAFT_1664 0.75 -0.4 1,736,863 + B158DRAFT_1664 0.75 +3.1 1,736,866 - B158DRAFT_1664 0.75 -0.6 1,736,871 - B158DRAFT_1664 0.76 +0.6 1,736,871 - B158DRAFT_1664 0.76 -0.3 1,736,887 + B158DRAFT_1664 0.76 +1.7 1,736,896 - B158DRAFT_1664 0.77 +0.8 1,736,897 + B158DRAFT_1664 0.77 -1.6 1,736,897 + B158DRAFT_1664 0.77 -1.1 1,736,901 + B158DRAFT_1664 0.77 +1.4 1,736,903 + B158DRAFT_1664 0.77 +1.1 1,736,961 + B158DRAFT_1664 0.80 -1.3 1,736,992 - B158DRAFT_1664 0.82 +0.1 1,737,032 + B158DRAFT_1664 0.84 -0.4 1,737,032 + B158DRAFT_1664 0.84 +0.4 1,737,032 + B158DRAFT_1664 0.84 -0.9 1,737,063 - B158DRAFT_1664 0.86 -1.2 1,737,063 - B158DRAFT_1664 0.86 -1.3 1,737,108 + B158DRAFT_1664 0.88 -0.0 1,737,171 + +0.9 1,737,179 - -0.7 1,737,201 - -0.6 1,737,203 + +3.4 1,737,213 + -0.7 1,737,216 - -1.3 1,737,221 - -0.7 1,737,231 - +0.1 1,737,233 + -0.9 1,737,236 - -0.1 1,737,243 + -0.4 1,737,249 - -1.0 1,737,279 - +2.1 1,737,279 - +1.7 1,737,300 - -0.5 1,737,323 + +0.3 1,737,323 + -0.9 1,737,331 - -0.8 1,737,364 - -0.0 1,737,366 + -0.9 1,737,366 + -1.2 1,737,366 + +1.7 1,737,366 + -0.5 1,737,374 - -1.3 1,737,374 - -0.9 1,737,374 - -1.9 1,737,374 - -0.7 1,737,374 - +0.1 1,737,374 - +4.8 1,737,374 - +2.4 1,737,374 - +1.8 1,737,374 - -1.4 1,737,374 - -0.2 1,737,374 - -1.0 1,737,413 + B158DRAFT_1665 0.11 -0.5 1,737,413 + B158DRAFT_1665 0.11 -0.9 1,737,443 + B158DRAFT_1665 0.14 +0.7 1,737,485 + B158DRAFT_1665 0.19 -1.5 1,737,493 + B158DRAFT_1665 0.20 -2.9 1,737,493 + B158DRAFT_1665 0.20 -0.2 1,737,493 + B158DRAFT_1665 0.20 -0.3 1,737,501 - B158DRAFT_1665 0.21 +0.9 1,737,501 - B158DRAFT_1665 0.21 +0.1 1,737,501 - B158DRAFT_1665 0.21 -1.8 1,737,501 - B158DRAFT_1665 0.21 -1.0 1,737,501 - B158DRAFT_1665 0.21 -2.1 1,737,501 - B158DRAFT_1665 0.21 +2.4 1,737,511 - B158DRAFT_1665 0.22 -1.7 1,737,513 - B158DRAFT_1665 0.23 -0.1 1,737,517 + B158DRAFT_1665 0.23 -2.5 1,737,525 - B158DRAFT_1665 0.24 -0.2 1,737,656 - B158DRAFT_1665 0.39 +1.1 1,737,695 - B158DRAFT_1665 0.44 +0.6 1,737,695 - B158DRAFT_1665 0.44 -1.3 1,737,710 - B158DRAFT_1665 0.45 -0.7 1,737,717 + B158DRAFT_1665 0.46 -0.5 1,737,722 + B158DRAFT_1665 0.47 -0.3 1,737,722 + B158DRAFT_1665 0.47 -1.6 1,737,730 - B158DRAFT_1665 0.48 -0.8 1,737,730 - B158DRAFT_1665 0.48 -1.4 1,737,730 - B158DRAFT_1665 0.48 -1.0 1,737,792 + B158DRAFT_1665 0.55 -2.1 1,737,792 + B158DRAFT_1665 0.55 -0.6 1,737,792 + B158DRAFT_1665 0.55 -1.1 1,737,792 + B158DRAFT_1665 0.55 -1.7 1,737,813 + B158DRAFT_1665 0.57 -1.4 1,737,829 + B158DRAFT_1665 0.59 -1.1 1,737,829 + B158DRAFT_1665 0.59 -0.2 1,737,829 + B158DRAFT_1665 0.59 +0.1 1,737,829 + B158DRAFT_1665 0.59 -0.9 1,737,829 + B158DRAFT_1665 0.59 +0.1 1,737,829 + B158DRAFT_1665 0.59 -0.4 1,737,837 - B158DRAFT_1665 0.60 +0.5 1,737,837 - B158DRAFT_1665 0.60 +4.4 1,737,837 - B158DRAFT_1665 0.60 -0.5 1,737,837 - B158DRAFT_1665 0.60 -0.7 1,737,844 - B158DRAFT_1665 0.61 +0.4 1,737,916 + B158DRAFT_1665 0.69 +0.1 1,737,921 + B158DRAFT_1665 0.70 -2.2 1,737,924 - B158DRAFT_1665 0.70 -0.6 1,737,950 - B158DRAFT_1665 0.73 -0.5 1,737,950 - B158DRAFT_1665 0.73 +0.1 1,737,950 - B158DRAFT_1665 0.73 +0.4 1,737,955 - B158DRAFT_1665 0.74 -0.7 1,737,965 - B158DRAFT_1665 0.75 -0.4 1,737,999 + B158DRAFT_1665 0.79 -0.7 1,738,000 + B158DRAFT_1665 0.79 +0.0 1,738,000 + B158DRAFT_1665 0.79 -1.3 1,738,008 - B158DRAFT_1665 0.80 -0.6 1,738,008 - B158DRAFT_1665 0.80 -1.1 1,738,008 - B158DRAFT_1665 0.80 +0.0 1,738,093 + B158DRAFT_1665 0.90 +0.3 1,738,112 + -0.3 1,738,136 - +0.1 1,738,230 - -0.7 1,738,264 + +1.9 1,738,292 + -0.2 1,738,344 + B158DRAFT_1666 0.16 -0.5 1,738,405 - B158DRAFT_1666 0.24 +0.1 1,738,417 + B158DRAFT_1666 0.26 +0.0 1,738,425 - B158DRAFT_1666 0.27 +0.1 1,738,519 + B158DRAFT_1666 0.41 -0.0 1,738,519 + B158DRAFT_1666 0.41 -0.4 1,738,519 + B158DRAFT_1666 0.41 -0.6 1,738,519 + B158DRAFT_1666 0.41 +0.4 1,738,519 + B158DRAFT_1666 0.41 -0.8 1,738,527 - B158DRAFT_1666 0.42 -0.5 1,738,527 - B158DRAFT_1666 0.42 +0.9 1,738,527 - B158DRAFT_1666 0.42 -0.9 1,738,527 - B158DRAFT_1666 0.42 -0.8 1,738,559 - B158DRAFT_1666 0.46 +0.2 1,738,703 + B158DRAFT_1666 0.67 +0.2 1,739,016 + B158DRAFT_1667 0.10 -0.7 1,739,024 - B158DRAFT_1667 0.12 +0.6 1,739,055 + B158DRAFT_1667 0.17 +0.8 1,739,071 + B158DRAFT_1667 0.20 -0.3 1,739,118 - B158DRAFT_1667 0.27 +0.4 1,739,133 - B158DRAFT_1667 0.30 +0.6
Or see this region's nucleotide sequence