Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1646 and B158DRAFT_1647 are separated by 20 nucleotides B158DRAFT_1647 and B158DRAFT_1648 are separated by 98 nucleotides B158DRAFT_1648 and B158DRAFT_1649 are separated by 81 nucleotides
B158DRAFT_1646: B158DRAFT_1646 - hypothetical protein, at 1,716,290 to 1,716,625
_1646
B158DRAFT_1647: B158DRAFT_1647 - hypothetical protein, at 1,716,646 to 1,717,209
_1647
B158DRAFT_1648: B158DRAFT_1648 - hypothetical protein, at 1,717,308 to 1,718,027
_1648
B158DRAFT_1649: B158DRAFT_1649 - ThiF family., at 1,718,109 to 1,720,379
_1649
Position (kb)
1717
1718
1719 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 1716.322 kb on + strand at 1716.340 kb on - strand, within B158DRAFT_1646 at 1716.398 kb on - strand, within B158DRAFT_1646 at 1716.425 kb on - strand, within B158DRAFT_1646 at 1716.439 kb on + strand, within B158DRAFT_1646 at 1716.439 kb on + strand, within B158DRAFT_1646 at 1716.439 kb on + strand, within B158DRAFT_1646 at 1716.439 kb on + strand, within B158DRAFT_1646 at 1716.439 kb on + strand, within B158DRAFT_1646 at 1716.439 kb on + strand, within B158DRAFT_1646 at 1716.439 kb on + strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.447 kb on - strand, within B158DRAFT_1646 at 1716.496 kb on + strand, within B158DRAFT_1646 at 1716.496 kb on + strand, within B158DRAFT_1646 at 1716.496 kb on + strand, within B158DRAFT_1646 at 1716.535 kb on - strand, within B158DRAFT_1646 at 1716.669 kb on + strand at 1716.669 kb on + strand at 1716.669 kb on + strand at 1716.669 kb on + strand at 1716.669 kb on + strand at 1716.677 kb on - strand at 1716.688 kb on + strand at 1716.704 kb on - strand, within B158DRAFT_1647 at 1716.714 kb on - strand, within B158DRAFT_1647 at 1716.940 kb on + strand, within B158DRAFT_1647 at 1716.948 kb on - strand, within B158DRAFT_1647 at 1716.953 kb on - strand, within B158DRAFT_1647 at 1717.074 kb on - strand, within B158DRAFT_1647 at 1717.099 kb on + strand, within B158DRAFT_1647 at 1717.102 kb on - strand, within B158DRAFT_1647 at 1717.138 kb on - strand, within B158DRAFT_1647 at 1717.143 kb on + strand, within B158DRAFT_1647 at 1717.151 kb on - strand, within B158DRAFT_1647 at 1717.151 kb on - strand, within B158DRAFT_1647 at 1717.249 kb on - strand at 1717.256 kb on + strand at 1717.875 kb on + strand, within B158DRAFT_1648 at 1717.875 kb on - strand, within B158DRAFT_1648 at 1717.891 kb on + strand, within B158DRAFT_1648 at 1717.959 kb on - strand at 1717.973 kb on + strand at 1717.991 kb on + strand at 1718.015 kb on + strand at 1718.266 kb on + strand at 1718.274 kb on - strand at 1718.355 kb on - strand, within B158DRAFT_1649 at 1718.591 kb on + strand, within B158DRAFT_1649 at 1718.591 kb on + strand, within B158DRAFT_1649 at 1718.743 kb on - strand, within B158DRAFT_1649 at 1718.778 kb on - strand, within B158DRAFT_1649 at 1718.814 kb on + strand, within B158DRAFT_1649 at 1718.814 kb on + strand, within B158DRAFT_1649 at 1718.817 kb on - strand, within B158DRAFT_1649 at 1718.822 kb on - strand, within B158DRAFT_1649 at 1718.840 kb on + strand, within B158DRAFT_1649 at 1718.870 kb on + strand, within B158DRAFT_1649 at 1718.989 kb on - strand, within B158DRAFT_1649 at 1718.989 kb on - strand, within B158DRAFT_1649 at 1719.016 kb on - strand, within B158DRAFT_1649 at 1719.016 kb on - strand, within B158DRAFT_1649
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,716,322 + -0.4 1,716,340 - B158DRAFT_1646 0.15 -1.0 1,716,398 - B158DRAFT_1646 0.32 +0.1 1,716,425 - B158DRAFT_1646 0.40 -0.7 1,716,439 + B158DRAFT_1646 0.44 -0.4 1,716,439 + B158DRAFT_1646 0.44 +1.7 1,716,439 + B158DRAFT_1646 0.44 -0.4 1,716,439 + B158DRAFT_1646 0.44 -0.7 1,716,439 + B158DRAFT_1646 0.44 +0.1 1,716,439 + B158DRAFT_1646 0.44 +0.9 1,716,439 + B158DRAFT_1646 0.44 -1.1 1,716,447 - B158DRAFT_1646 0.47 -2.0 1,716,447 - B158DRAFT_1646 0.47 -0.2 1,716,447 - B158DRAFT_1646 0.47 -0.4 1,716,447 - B158DRAFT_1646 0.47 -1.3 1,716,447 - B158DRAFT_1646 0.47 -2.0 1,716,447 - B158DRAFT_1646 0.47 -0.9 1,716,447 - B158DRAFT_1646 0.47 -1.7 1,716,447 - B158DRAFT_1646 0.47 +0.3 1,716,447 - B158DRAFT_1646 0.47 -1.3 1,716,496 + B158DRAFT_1646 0.61 +0.2 1,716,496 + B158DRAFT_1646 0.61 +1.6 1,716,496 + B158DRAFT_1646 0.61 +0.5 1,716,535 - B158DRAFT_1646 0.73 +1.3 1,716,669 + -0.1 1,716,669 + -1.7 1,716,669 + -0.7 1,716,669 + -1.0 1,716,669 + -0.5 1,716,677 - +1.5 1,716,688 + -0.3 1,716,704 - B158DRAFT_1647 0.10 -0.2 1,716,714 - B158DRAFT_1647 0.12 +0.4 1,716,940 + B158DRAFT_1647 0.52 +0.1 1,716,948 - B158DRAFT_1647 0.54 +0.5 1,716,953 - B158DRAFT_1647 0.54 -2.2 1,717,074 - B158DRAFT_1647 0.76 +0.0 1,717,099 + B158DRAFT_1647 0.80 -0.1 1,717,102 - B158DRAFT_1647 0.81 +0.4 1,717,138 - B158DRAFT_1647 0.87 +0.0 1,717,143 + B158DRAFT_1647 0.88 +1.6 1,717,151 - B158DRAFT_1647 0.90 -1.8 1,717,151 - B158DRAFT_1647 0.90 -0.7 1,717,249 - -1.5 1,717,256 + -1.2 1,717,875 + B158DRAFT_1648 0.79 -0.4 1,717,875 - B158DRAFT_1648 0.79 -0.0 1,717,891 + B158DRAFT_1648 0.81 +4.8 1,717,959 - +0.0 1,717,973 + +1.7 1,717,991 + +6.0 1,718,015 + -0.8 1,718,266 + -0.7 1,718,274 - -0.1 1,718,355 - B158DRAFT_1649 0.11 +2.7 1,718,591 + B158DRAFT_1649 0.21 -1.6 1,718,591 + B158DRAFT_1649 0.21 +0.1 1,718,743 - B158DRAFT_1649 0.28 +0.2 1,718,778 - B158DRAFT_1649 0.29 +1.3 1,718,814 + B158DRAFT_1649 0.31 -1.7 1,718,814 + B158DRAFT_1649 0.31 -1.0 1,718,817 - B158DRAFT_1649 0.31 +0.2 1,718,822 - B158DRAFT_1649 0.31 +0.3 1,718,840 + B158DRAFT_1649 0.32 -1.9 1,718,870 + B158DRAFT_1649 0.34 +0.8 1,718,989 - B158DRAFT_1649 0.39 +0.9 1,718,989 - B158DRAFT_1649 0.39 -0.9 1,719,016 - B158DRAFT_1649 0.40 +0.4 1,719,016 - B158DRAFT_1649 0.40 +0.0
Or see this region's nucleotide sequence