Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1531 and B158DRAFT_1532 are separated by 15 nucleotides B158DRAFT_1532 and B158DRAFT_1533 are separated by 68 nucleotides
B158DRAFT_1531: B158DRAFT_1531 - protein RecA, at 1,586,660 to 1,587,697
_1531
B158DRAFT_1532: B158DRAFT_1532 - Uncharacterized protein conserved in bacteria, at 1,587,713 to 1,588,183
_1532
B158DRAFT_1533: B158DRAFT_1533 - alanyl-tRNA synthetase (EC 6.1.1.7), at 1,588,252 to 1,590,879
_1533
Position (kb)
1587
1588
1589 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1586.726 kb on + strand at 1586.734 kb on - strand at 1586.740 kb on - strand at 1586.744 kb on + strand at 1586.744 kb on + strand at 1586.752 kb on - strand at 1586.787 kb on + strand, within B158DRAFT_1531 at 1586.812 kb on + strand, within B158DRAFT_1531 at 1586.812 kb on + strand, within B158DRAFT_1531 at 1586.820 kb on - strand, within B158DRAFT_1531 at 1586.834 kb on - strand, within B158DRAFT_1531 at 1586.848 kb on + strand, within B158DRAFT_1531 at 1586.864 kb on - strand, within B158DRAFT_1531 at 1586.897 kb on + strand, within B158DRAFT_1531 at 1586.967 kb on + strand, within B158DRAFT_1531 at 1586.967 kb on + strand, within B158DRAFT_1531 at 1586.975 kb on - strand, within B158DRAFT_1531 at 1586.975 kb on - strand, within B158DRAFT_1531 at 1586.975 kb on - strand, within B158DRAFT_1531 at 1586.982 kb on + strand, within B158DRAFT_1531 at 1586.982 kb on + strand, within B158DRAFT_1531 at 1586.982 kb on + strand, within B158DRAFT_1531 at 1586.990 kb on - strand, within B158DRAFT_1531 at 1586.990 kb on - strand, within B158DRAFT_1531 at 1587.013 kb on + strand, within B158DRAFT_1531 at 1587.013 kb on + strand, within B158DRAFT_1531 at 1587.016 kb on + strand, within B158DRAFT_1531 at 1587.023 kb on + strand, within B158DRAFT_1531 at 1587.060 kb on + strand, within B158DRAFT_1531 at 1587.095 kb on + strand, within B158DRAFT_1531 at 1587.172 kb on + strand, within B158DRAFT_1531 at 1587.172 kb on - strand, within B158DRAFT_1531 at 1587.213 kb on + strand, within B158DRAFT_1531 at 1587.215 kb on + strand, within B158DRAFT_1531 at 1587.275 kb on + strand, within B158DRAFT_1531 at 1587.299 kb on + strand, within B158DRAFT_1531 at 1587.307 kb on + strand, within B158DRAFT_1531 at 1587.315 kb on - strand, within B158DRAFT_1531 at 1587.403 kb on + strand, within B158DRAFT_1531 at 1587.403 kb on + strand, within B158DRAFT_1531 at 1587.403 kb on + strand, within B158DRAFT_1531 at 1587.403 kb on + strand, within B158DRAFT_1531 at 1587.403 kb on + strand, within B158DRAFT_1531 at 1587.408 kb on + strand, within B158DRAFT_1531 at 1587.411 kb on - strand, within B158DRAFT_1531 at 1587.531 kb on + strand, within B158DRAFT_1531 at 1587.559 kb on + strand, within B158DRAFT_1531 at 1587.566 kb on - strand, within B158DRAFT_1531 at 1587.570 kb on + strand, within B158DRAFT_1531 at 1587.580 kb on - strand, within B158DRAFT_1531 at 1587.601 kb on + strand at 1587.609 kb on - strand at 1587.633 kb on - strand at 1587.640 kb on + strand at 1587.650 kb on + strand at 1587.658 kb on - strand at 1587.658 kb on - strand at 1587.686 kb on - strand at 1587.701 kb on + strand at 1587.709 kb on - strand at 1587.727 kb on + strand at 1587.757 kb on + strand at 1587.757 kb on + strand at 1587.787 kb on - strand, within B158DRAFT_1532 at 1587.827 kb on + strand, within B158DRAFT_1532 at 1587.835 kb on + strand, within B158DRAFT_1532 at 1587.835 kb on + strand, within B158DRAFT_1532 at 1587.835 kb on + strand, within B158DRAFT_1532 at 1587.835 kb on + strand, within B158DRAFT_1532 at 1587.836 kb on + strand, within B158DRAFT_1532 at 1587.843 kb on - strand, within B158DRAFT_1532 at 1587.843 kb on - strand, within B158DRAFT_1532 at 1587.843 kb on - strand, within B158DRAFT_1532 at 1587.879 kb on + strand, within B158DRAFT_1532 at 1587.879 kb on - strand, within B158DRAFT_1532 at 1587.893 kb on + strand, within B158DRAFT_1532 at 1587.901 kb on - strand, within B158DRAFT_1532 at 1587.901 kb on - strand, within B158DRAFT_1532 at 1587.901 kb on - strand, within B158DRAFT_1532 at 1587.932 kb on + strand, within B158DRAFT_1532 at 1587.969 kb on + strand, within B158DRAFT_1532 at 1587.969 kb on + strand, within B158DRAFT_1532 at 1588.029 kb on - strand, within B158DRAFT_1532 at 1588.071 kb on + strand, within B158DRAFT_1532 at 1588.071 kb on + strand, within B158DRAFT_1532
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,586,726 + +1.6 1,586,734 - -0.3 1,586,740 - -1.6 1,586,744 + -1.1 1,586,744 + +1.8 1,586,752 - +1.9 1,586,787 + B158DRAFT_1531 0.12 +1.0 1,586,812 + B158DRAFT_1531 0.15 +0.8 1,586,812 + B158DRAFT_1531 0.15 +0.3 1,586,820 - B158DRAFT_1531 0.15 -1.0 1,586,834 - B158DRAFT_1531 0.17 +0.6 1,586,848 + B158DRAFT_1531 0.18 -0.1 1,586,864 - B158DRAFT_1531 0.20 -1.4 1,586,897 + B158DRAFT_1531 0.23 +1.1 1,586,967 + B158DRAFT_1531 0.30 +0.6 1,586,967 + B158DRAFT_1531 0.30 -0.7 1,586,975 - B158DRAFT_1531 0.30 +0.8 1,586,975 - B158DRAFT_1531 0.30 +0.1 1,586,975 - B158DRAFT_1531 0.30 -1.1 1,586,982 + B158DRAFT_1531 0.31 +0.1 1,586,982 + B158DRAFT_1531 0.31 -0.5 1,586,982 + B158DRAFT_1531 0.31 -0.1 1,586,990 - B158DRAFT_1531 0.32 -0.8 1,586,990 - B158DRAFT_1531 0.32 -1.5 1,587,013 + B158DRAFT_1531 0.34 -0.4 1,587,013 + B158DRAFT_1531 0.34 +0.3 1,587,016 + B158DRAFT_1531 0.34 -0.6 1,587,023 + B158DRAFT_1531 0.35 -0.0 1,587,060 + B158DRAFT_1531 0.39 +3.4 1,587,095 + B158DRAFT_1531 0.42 -0.2 1,587,172 + B158DRAFT_1531 0.49 +0.7 1,587,172 - B158DRAFT_1531 0.49 +0.2 1,587,213 + B158DRAFT_1531 0.53 -0.9 1,587,215 + B158DRAFT_1531 0.53 +0.4 1,587,275 + B158DRAFT_1531 0.59 +2.7 1,587,299 + B158DRAFT_1531 0.62 -0.7 1,587,307 + B158DRAFT_1531 0.62 +1.0 1,587,315 - B158DRAFT_1531 0.63 +2.8 1,587,403 + B158DRAFT_1531 0.72 -1.7 1,587,403 + B158DRAFT_1531 0.72 -0.7 1,587,403 + B158DRAFT_1531 0.72 +2.2 1,587,403 + B158DRAFT_1531 0.72 +0.1 1,587,403 + B158DRAFT_1531 0.72 +2.8 1,587,408 + B158DRAFT_1531 0.72 +0.4 1,587,411 - B158DRAFT_1531 0.72 +0.6 1,587,531 + B158DRAFT_1531 0.84 -0.7 1,587,559 + B158DRAFT_1531 0.87 +0.6 1,587,566 - B158DRAFT_1531 0.87 -1.5 1,587,570 + B158DRAFT_1531 0.88 +0.1 1,587,580 - B158DRAFT_1531 0.89 -0.0 1,587,601 + +0.2 1,587,609 - -0.6 1,587,633 - +0.1 1,587,640 + -0.3 1,587,650 + -0.1 1,587,658 - -0.4 1,587,658 - -2.6 1,587,686 - -0.5 1,587,701 + +0.1 1,587,709 - +0.6 1,587,727 + -0.6 1,587,757 + +1.3 1,587,757 + +1.1 1,587,787 - B158DRAFT_1532 0.16 -0.2 1,587,827 + B158DRAFT_1532 0.24 +1.2 1,587,835 + B158DRAFT_1532 0.26 -0.3 1,587,835 + B158DRAFT_1532 0.26 -1.6 1,587,835 + B158DRAFT_1532 0.26 -0.3 1,587,835 + B158DRAFT_1532 0.26 -0.9 1,587,836 + B158DRAFT_1532 0.26 -0.6 1,587,843 - B158DRAFT_1532 0.28 -0.1 1,587,843 - B158DRAFT_1532 0.28 -0.2 1,587,843 - B158DRAFT_1532 0.28 +0.2 1,587,879 + B158DRAFT_1532 0.35 -1.5 1,587,879 - B158DRAFT_1532 0.35 -1.1 1,587,893 + B158DRAFT_1532 0.38 -1.1 1,587,901 - B158DRAFT_1532 0.40 -0.6 1,587,901 - B158DRAFT_1532 0.40 -0.8 1,587,901 - B158DRAFT_1532 0.40 +1.0 1,587,932 + B158DRAFT_1532 0.46 -0.7 1,587,969 + B158DRAFT_1532 0.54 -0.8 1,587,969 + B158DRAFT_1532 0.54 -0.8 1,588,029 - B158DRAFT_1532 0.67 +0.8 1,588,071 + B158DRAFT_1532 0.76 -0.6 1,588,071 + B158DRAFT_1532 0.76 -0.1
Or see this region's nucleotide sequence