Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1349 and B158DRAFT_1350 overlap by 11 nucleotides B158DRAFT_1350 and B158DRAFT_1351 are separated by 23 nucleotides B158DRAFT_1351 and B158DRAFT_1352 overlap by 4 nucleotides
B158DRAFT_1349: B158DRAFT_1349 - hypothetical protein, at 1,394,772 to 1,395,275
_1349
B158DRAFT_1350: B158DRAFT_1350 - hypothetical protein, at 1,395,265 to 1,395,996
_1350
B158DRAFT_1351: B158DRAFT_1351 - hypothetical protein, at 1,396,020 to 1,396,166
_1351
B158DRAFT_1352: B158DRAFT_1352 - Retron-type reverse transcriptase, at 1,396,163 to 1,397,125
_1352
Position (kb)
1396
1397
1398 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1395.240 kb on - strand at 1395.584 kb on - strand, within B158DRAFT_1350 at 1396.032 kb on + strand at 1396.089 kb on - strand, within B158DRAFT_1351 at 1396.104 kb on - strand, within B158DRAFT_1351 at 1396.107 kb on + strand, within B158DRAFT_1351 at 1396.196 kb on + strand at 1396.212 kb on + strand at 1396.277 kb on + strand, within B158DRAFT_1352 at 1396.277 kb on + strand, within B158DRAFT_1352 at 1396.285 kb on - strand, within B158DRAFT_1352 at 1396.494 kb on + strand, within B158DRAFT_1352 at 1396.624 kb on - strand, within B158DRAFT_1352 at 1396.641 kb on + strand, within B158DRAFT_1352 at 1396.641 kb on + strand, within B158DRAFT_1352 at 1396.944 kb on + strand, within B158DRAFT_1352 at 1396.944 kb on + strand, within B158DRAFT_1352 at 1396.944 kb on + strand, within B158DRAFT_1352 at 1397.078 kb on - strand at 1397.208 kb on - strand at 1397.242 kb on + strand at 1397.250 kb on - strand at 1397.259 kb on + strand at 1397.315 kb on - strand at 1397.430 kb on + strand at 1397.486 kb on + strand at 1397.527 kb on - strand at 1397.529 kb on + strand at 1397.574 kb on - strand at 1397.645 kb on + strand at 1397.670 kb on + strand at 1397.763 kb on - strand at 1397.874 kb on + strand at 1397.880 kb on - strand at 1397.882 kb on - strand at 1397.882 kb on - strand at 1397.882 kb on - strand at 1397.882 kb on - strand at 1397.887 kb on - strand at 1397.917 kb on + strand at 1397.922 kb on + strand at 1397.925 kb on - strand at 1397.979 kb on + strand at 1398.031 kb on + strand at 1398.032 kb on + strand at 1398.040 kb on - strand at 1398.040 kb on - strand at 1398.078 kb on + strand at 1398.078 kb on + strand at 1398.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,395,240 - -0.3 1,395,584 - B158DRAFT_1350 0.44 -1.2 1,396,032 + -0.0 1,396,089 - B158DRAFT_1351 0.47 -0.0 1,396,104 - B158DRAFT_1351 0.57 -0.1 1,396,107 + B158DRAFT_1351 0.59 -0.7 1,396,196 + +0.6 1,396,212 + -1.5 1,396,277 + B158DRAFT_1352 0.12 +0.9 1,396,277 + B158DRAFT_1352 0.12 +0.4 1,396,285 - B158DRAFT_1352 0.13 -0.8 1,396,494 + B158DRAFT_1352 0.34 -0.4 1,396,624 - B158DRAFT_1352 0.48 -0.1 1,396,641 + B158DRAFT_1352 0.50 +2.5 1,396,641 + B158DRAFT_1352 0.50 +0.4 1,396,944 + B158DRAFT_1352 0.81 -0.6 1,396,944 + B158DRAFT_1352 0.81 -1.5 1,396,944 + B158DRAFT_1352 0.81 -1.3 1,397,078 - -0.7 1,397,208 - +1.6 1,397,242 + -0.4 1,397,250 - +0.2 1,397,259 + +0.3 1,397,315 - +0.6 1,397,430 + +1.3 1,397,486 + -0.4 1,397,527 - -0.8 1,397,529 + +0.5 1,397,574 - +0.5 1,397,645 + +0.9 1,397,670 + -2.5 1,397,763 - -0.6 1,397,874 + -0.4 1,397,880 - +0.5 1,397,882 - +0.5 1,397,882 - -0.3 1,397,882 - -0.2 1,397,882 - -1.3 1,397,887 - +0.9 1,397,917 + +0.0 1,397,922 + +0.4 1,397,925 - -1.6 1,397,979 + +0.0 1,398,031 + -0.4 1,398,032 + -1.5 1,398,040 - +1.1 1,398,040 - +1.4 1,398,078 + +0.1 1,398,078 + -1.6 1,398,078 + +0.0
Or see this region's nucleotide sequence