Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1345

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1344 and B158DRAFT_1345 are separated by 390 nucleotidesB158DRAFT_1345 and B158DRAFT_1346 are separated by 60 nucleotides B158DRAFT_1344: B158DRAFT_1344 - 2-methylcitrate synthase (EC 2.3.3.5), at 1,387,005 to 1,388,144 _1344 B158DRAFT_1345: B158DRAFT_1345 - aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent, at 1,388,535 to 1,391,123 _1345 B158DRAFT_1346: B158DRAFT_1346 - 2-methylaconitate cis-trans isomerase, at 1,391,184 to 1,392,398 _1346 Position (kb) 1388 1389 1390 1391 1392Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1387.545 kb on + strand, within B158DRAFT_1344at 1387.553 kb on - strand, within B158DRAFT_1344at 1387.553 kb on - strand, within B158DRAFT_1344at 1387.570 kb on - strand, within B158DRAFT_1344at 1387.572 kb on + strand, within B158DRAFT_1344at 1387.580 kb on - strand, within B158DRAFT_1344at 1387.588 kb on - strand, within B158DRAFT_1344at 1387.588 kb on - strand, within B158DRAFT_1344at 1387.593 kb on + strand, within B158DRAFT_1344at 1387.629 kb on + strand, within B158DRAFT_1344at 1387.629 kb on + strand, within B158DRAFT_1344at 1387.631 kb on - strand, within B158DRAFT_1344at 1387.632 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.672 kb on + strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.687 kb on - strand, within B158DRAFT_1344at 1387.719 kb on + strand, within B158DRAFT_1344at 1387.719 kb on + strand, within B158DRAFT_1344at 1387.727 kb on - strand, within B158DRAFT_1344at 1387.727 kb on - strand, within B158DRAFT_1344at 1387.729 kb on + strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.803 kb on + strand, within B158DRAFT_1344at 1387.810 kb on - strand, within B158DRAFT_1344at 1387.891 kb on + strand, within B158DRAFT_1344at 1388.058 kb on - strandat 1388.422 kb on + strandat 1389.025 kb on - strand, within B158DRAFT_1345at 1389.279 kb on + strand, within B158DRAFT_1345at 1389.454 kb on - strand, within B158DRAFT_1345at 1390.453 kb on - strand, within B158DRAFT_1345at 1390.568 kb on + strand, within B158DRAFT_1345at 1390.568 kb on + strand, within B158DRAFT_1345at 1390.576 kb on - strand, within B158DRAFT_1345at 1390.764 kb on + strand, within B158DRAFT_1345at 1390.764 kb on + strand, within B158DRAFT_1345at 1391.210 kb on - strandat 1391.217 kb on + strandat 1391.222 kb on + strandat 1391.306 kb on + strand, within B158DRAFT_1346at 1391.353 kb on + strand, within B158DRAFT_1346at 1391.361 kb on - strand, within B158DRAFT_1346at 1391.777 kb on + strand, within B158DRAFT_1346at 1391.890 kb on + strand, within B158DRAFT_1346at 1392.112 kb on + strand, within B158DRAFT_1346

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
1,387,545 + B158DRAFT_1344 0.47 -0.9
1,387,553 - B158DRAFT_1344 0.48 -1.5
1,387,553 - B158DRAFT_1344 0.48 +0.3
1,387,570 - B158DRAFT_1344 0.50 -1.8
1,387,572 + B158DRAFT_1344 0.50 +0.9
1,387,580 - B158DRAFT_1344 0.50 +0.2
1,387,588 - B158DRAFT_1344 0.51 +0.2
1,387,588 - B158DRAFT_1344 0.51 -0.5
1,387,593 + B158DRAFT_1344 0.52 +0.9
1,387,629 + B158DRAFT_1344 0.55 +0.4
1,387,629 + B158DRAFT_1344 0.55 -0.5
1,387,631 - B158DRAFT_1344 0.55 +0.2
1,387,632 - B158DRAFT_1344 0.55 +0.2
1,387,637 - B158DRAFT_1344 0.55 -1.3
1,387,637 - B158DRAFT_1344 0.55 -1.4
1,387,637 - B158DRAFT_1344 0.55 +1.1
1,387,672 + B158DRAFT_1344 0.59 +1.7
1,387,680 - B158DRAFT_1344 0.59 +0.8
1,387,680 - B158DRAFT_1344 0.59 -0.6
1,387,680 - B158DRAFT_1344 0.59 +4.4
1,387,680 - B158DRAFT_1344 0.59 -0.1
1,387,680 - B158DRAFT_1344 0.59 -1.5
1,387,680 - B158DRAFT_1344 0.59 +0.2
1,387,687 - B158DRAFT_1344 0.60 -0.2
1,387,719 + B158DRAFT_1344 0.63 -0.9
1,387,719 + B158DRAFT_1344 0.63 +0.4
1,387,727 - B158DRAFT_1344 0.63 -0.4
1,387,727 - B158DRAFT_1344 0.63 +0.0
1,387,729 + B158DRAFT_1344 0.64 +0.8
1,387,737 - B158DRAFT_1344 0.64 -3.2
1,387,737 - B158DRAFT_1344 0.64 +0.0
1,387,737 - B158DRAFT_1344 0.64 -2.4
1,387,737 - B158DRAFT_1344 0.64 -0.2
1,387,803 + B158DRAFT_1344 0.70 +1.2
1,387,810 - B158DRAFT_1344 0.71 -1.4
1,387,891 + B158DRAFT_1344 0.78 -0.5
1,388,058 - -2.0
1,388,422 + -1.0
1,389,025 - B158DRAFT_1345 0.19 +3.6
1,389,279 + B158DRAFT_1345 0.29 +1.5
1,389,454 - B158DRAFT_1345 0.35 +1.8
1,390,453 - B158DRAFT_1345 0.74 +4.1
1,390,568 + B158DRAFT_1345 0.79 +2.0
1,390,568 + B158DRAFT_1345 0.79 +2.5
1,390,576 - B158DRAFT_1345 0.79 +2.1
1,390,764 + B158DRAFT_1345 0.86 +1.5
1,390,764 + B158DRAFT_1345 0.86 +2.9
1,391,210 - +2.1
1,391,217 + +3.5
1,391,222 + -0.2
1,391,306 + B158DRAFT_1346 0.10 +1.2
1,391,353 + B158DRAFT_1346 0.14 +2.5
1,391,361 - B158DRAFT_1346 0.15 +1.7
1,391,777 + B158DRAFT_1346 0.49 +2.1
1,391,890 + B158DRAFT_1346 0.58 +0.7
1,392,112 + B158DRAFT_1346 0.76 +1.1

Or see this region's nucleotide sequence