Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0954 and B158DRAFT_0955 are separated by 1 nucleotides B158DRAFT_0955 and B158DRAFT_0956 are separated by 385 nucleotides
B158DRAFT_0954: B158DRAFT_0954 - diguanylate cyclase (GGDEF) domain, at 982,363 to 983,769
_0954
B158DRAFT_0955: B158DRAFT_0955 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 983,771 to 986,338
_0955
B158DRAFT_0956: B158DRAFT_0956 - dissimilatory nitrite reductase (NO-forming), copper type apoprotein, at 986,724 to 988,136
_0956
Position (kb) 983
984
985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 982.792 kb on - strand, within B158DRAFT_0954 at 982.802 kb on - strand, within B158DRAFT_0954 at 982.807 kb on + strand, within B158DRAFT_0954 at 982.807 kb on + strand, within B158DRAFT_0954 at 982.807 kb on + strand, within B158DRAFT_0954 at 982.807 kb on + strand, within B158DRAFT_0954 at 982.937 kb on - strand, within B158DRAFT_0954 at 982.972 kb on + strand, within B158DRAFT_0954 at 983.004 kb on + strand, within B158DRAFT_0954 at 983.009 kb on + strand, within B158DRAFT_0954 at 983.009 kb on + strand, within B158DRAFT_0954 at 983.009 kb on + strand, within B158DRAFT_0954 at 983.009 kb on + strand, within B158DRAFT_0954 at 983.017 kb on - strand, within B158DRAFT_0954 at 983.017 kb on - strand, within B158DRAFT_0954 at 983.017 kb on - strand, within B158DRAFT_0954 at 983.027 kb on - strand, within B158DRAFT_0954 at 983.064 kb on - strand, within B158DRAFT_0954 at 983.082 kb on - strand, within B158DRAFT_0954 at 983.116 kb on - strand, within B158DRAFT_0954 at 983.227 kb on + strand, within B158DRAFT_0954 at 983.285 kb on - strand, within B158DRAFT_0954 at 983.638 kb on - strand at 983.644 kb on - strand at 983.652 kb on + strand at 983.652 kb on + strand at 983.654 kb on - strand at 983.660 kb on - strand at 983.710 kb on + strand at 983.783 kb on + strand at 984.015 kb on + strand at 984.154 kb on - strand, within B158DRAFT_0955 at 984.154 kb on - strand, within B158DRAFT_0955 at 984.154 kb on - strand, within B158DRAFT_0955 at 984.156 kb on + strand, within B158DRAFT_0955 at 984.164 kb on - strand, within B158DRAFT_0955 at 984.172 kb on + strand, within B158DRAFT_0955 at 984.172 kb on + strand, within B158DRAFT_0955 at 984.180 kb on - strand, within B158DRAFT_0955 at 984.207 kb on - strand, within B158DRAFT_0955 at 984.255 kb on + strand, within B158DRAFT_0955 at 984.308 kb on - strand, within B158DRAFT_0955 at 984.309 kb on - strand, within B158DRAFT_0955 at 984.310 kb on - strand, within B158DRAFT_0955 at 984.310 kb on - strand, within B158DRAFT_0955 at 984.515 kb on + strand, within B158DRAFT_0955 at 984.522 kb on + strand, within B158DRAFT_0955 at 984.534 kb on + strand, within B158DRAFT_0955 at 984.566 kb on - strand, within B158DRAFT_0955 at 984.663 kb on + strand, within B158DRAFT_0955 at 984.752 kb on + strand, within B158DRAFT_0955 at 984.752 kb on + strand, within B158DRAFT_0955 at 984.756 kb on + strand, within B158DRAFT_0955 at 984.809 kb on - strand, within B158DRAFT_0955 at 984.817 kb on - strand, within B158DRAFT_0955 at 984.858 kb on + strand, within B158DRAFT_0955 at 984.866 kb on - strand, within B158DRAFT_0955 at 984.866 kb on - strand, within B158DRAFT_0955 at 984.866 kb on - strand, within B158DRAFT_0955 at 985.061 kb on + strand, within B158DRAFT_0955 at 985.061 kb on + strand, within B158DRAFT_0955 at 985.071 kb on + strand, within B158DRAFT_0955 at 985.298 kb on - strand, within B158DRAFT_0955 at 985.395 kb on + strand, within B158DRAFT_0955 at 985.395 kb on - strand, within B158DRAFT_0955 at 985.403 kb on - strand, within B158DRAFT_0955 at 985.403 kb on - strand, within B158DRAFT_0955 at 985.453 kb on + strand, within B158DRAFT_0955 at 985.592 kb on + strand, within B158DRAFT_0955 at 985.658 kb on - strand, within B158DRAFT_0955 at 985.658 kb on - strand, within B158DRAFT_0955 at 985.658 kb on - strand, within B158DRAFT_0955 at 985.658 kb on - strand, within B158DRAFT_0955 at 985.690 kb on - strand, within B158DRAFT_0955 at 985.756 kb on - strand, within B158DRAFT_0955 at 985.811 kb on + strand, within B158DRAFT_0955 at 985.811 kb on + strand, within B158DRAFT_0955 at 985.827 kb on - strand, within B158DRAFT_0955 at 985.836 kb on - strand, within B158DRAFT_0955 at 985.855 kb on + strand, within B158DRAFT_0955 at 985.900 kb on + strand, within B158DRAFT_0955 at 985.908 kb on - strand, within B158DRAFT_0955 at 986.020 kb on + strand, within B158DRAFT_0955 at 986.025 kb on + strand, within B158DRAFT_0955 at 986.032 kb on - strand, within B158DRAFT_0955 at 986.079 kb on - strand, within B158DRAFT_0955 at 986.109 kb on - strand at 986.138 kb on - strand at 986.197 kb on + strand at 986.203 kb on - strand at 986.205 kb on - strand at 986.217 kb on + strand at 986.252 kb on + strand at 986.252 kb on + strand at 986.260 kb on - strand at 986.281 kb on + strand at 986.281 kb on + strand at 986.478 kb on - strand at 986.657 kb on - strand at 986.726 kb on - strand at 986.769 kb on + strand at 986.777 kb on - strand at 986.783 kb on + strand at 986.844 kb on - strand at 986.872 kb on + strand, within B158DRAFT_0956 at 986.899 kb on - strand, within B158DRAFT_0956 at 986.917 kb on - strand, within B158DRAFT_0956 at 986.939 kb on - strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.964 kb on + strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 986.972 kb on - strand, within B158DRAFT_0956 at 987.070 kb on - strand, within B158DRAFT_0956 at 987.072 kb on - strand, within B158DRAFT_0956 at 987.138 kb on + strand, within B158DRAFT_0956 at 987.146 kb on - strand, within B158DRAFT_0956 at 987.167 kb on - strand, within B158DRAFT_0956 at 987.186 kb on + strand, within B158DRAFT_0956 at 987.186 kb on + strand, within B158DRAFT_0956 at 987.268 kb on + strand, within B158DRAFT_0956 at 987.317 kb on - strand, within B158DRAFT_0956
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 982,792 - B158DRAFT_0954 0.30 +0.2 982,802 - B158DRAFT_0954 0.31 +2.0 982,807 + B158DRAFT_0954 0.32 +0.1 982,807 + B158DRAFT_0954 0.32 -0.4 982,807 + B158DRAFT_0954 0.32 -0.8 982,807 + B158DRAFT_0954 0.32 -1.5 982,937 - B158DRAFT_0954 0.41 -0.8 982,972 + B158DRAFT_0954 0.43 -0.1 983,004 + B158DRAFT_0954 0.46 +1.1 983,009 + B158DRAFT_0954 0.46 +0.2 983,009 + B158DRAFT_0954 0.46 -1.3 983,009 + B158DRAFT_0954 0.46 -1.2 983,009 + B158DRAFT_0954 0.46 -1.6 983,017 - B158DRAFT_0954 0.46 -1.3 983,017 - B158DRAFT_0954 0.46 +2.7 983,017 - B158DRAFT_0954 0.46 -0.8 983,027 - B158DRAFT_0954 0.47 -0.0 983,064 - B158DRAFT_0954 0.50 -1.7 983,082 - B158DRAFT_0954 0.51 -0.7 983,116 - B158DRAFT_0954 0.54 -2.1 983,227 + B158DRAFT_0954 0.61 +1.0 983,285 - B158DRAFT_0954 0.66 -1.4 983,638 - -1.6 983,644 - -1.3 983,652 + -2.3 983,652 + -0.3 983,654 - +3.1 983,660 - -0.8 983,710 + -0.0 983,783 + -0.7 984,015 + +1.4 984,154 - B158DRAFT_0955 0.15 +0.5 984,154 - B158DRAFT_0955 0.15 +0.2 984,154 - B158DRAFT_0955 0.15 -0.8 984,156 + B158DRAFT_0955 0.15 +0.4 984,164 - B158DRAFT_0955 0.15 -0.4 984,172 + B158DRAFT_0955 0.16 -1.4 984,172 + B158DRAFT_0955 0.16 +1.5 984,180 - B158DRAFT_0955 0.16 -0.7 984,207 - B158DRAFT_0955 0.17 -1.2 984,255 + B158DRAFT_0955 0.19 +2.6 984,308 - B158DRAFT_0955 0.21 +0.5 984,309 - B158DRAFT_0955 0.21 -0.1 984,310 - B158DRAFT_0955 0.21 +0.8 984,310 - B158DRAFT_0955 0.21 -0.3 984,515 + B158DRAFT_0955 0.29 -2.5 984,522 + B158DRAFT_0955 0.29 -1.3 984,534 + B158DRAFT_0955 0.30 -1.2 984,566 - B158DRAFT_0955 0.31 -0.9 984,663 + B158DRAFT_0955 0.35 -0.8 984,752 + B158DRAFT_0955 0.38 -0.4 984,752 + B158DRAFT_0955 0.38 -0.9 984,756 + B158DRAFT_0955 0.38 -1.1 984,809 - B158DRAFT_0955 0.40 -1.1 984,817 - B158DRAFT_0955 0.41 -0.9 984,858 + B158DRAFT_0955 0.42 -2.1 984,866 - B158DRAFT_0955 0.43 -0.7 984,866 - B158DRAFT_0955 0.43 -1.1 984,866 - B158DRAFT_0955 0.43 -0.7 985,061 + B158DRAFT_0955 0.50 +0.8 985,061 + B158DRAFT_0955 0.50 -0.6 985,071 + B158DRAFT_0955 0.51 -0.0 985,298 - B158DRAFT_0955 0.59 -0.8 985,395 + B158DRAFT_0955 0.63 +0.9 985,395 - B158DRAFT_0955 0.63 -0.6 985,403 - B158DRAFT_0955 0.64 -1.2 985,403 - B158DRAFT_0955 0.64 +0.5 985,453 + B158DRAFT_0955 0.65 -1.4 985,592 + B158DRAFT_0955 0.71 -0.7 985,658 - B158DRAFT_0955 0.73 -0.9 985,658 - B158DRAFT_0955 0.73 +0.1 985,658 - B158DRAFT_0955 0.73 -0.6 985,658 - B158DRAFT_0955 0.73 +1.4 985,690 - B158DRAFT_0955 0.75 -0.1 985,756 - B158DRAFT_0955 0.77 -1.3 985,811 + B158DRAFT_0955 0.79 -0.6 985,811 + B158DRAFT_0955 0.79 -0.6 985,827 - B158DRAFT_0955 0.80 -1.0 985,836 - B158DRAFT_0955 0.80 -0.5 985,855 + B158DRAFT_0955 0.81 +0.3 985,900 + B158DRAFT_0955 0.83 +1.5 985,908 - B158DRAFT_0955 0.83 +0.6 986,020 + B158DRAFT_0955 0.88 -2.6 986,025 + B158DRAFT_0955 0.88 -0.5 986,032 - B158DRAFT_0955 0.88 -1.0 986,079 - B158DRAFT_0955 0.90 -1.8 986,109 - +0.5 986,138 - +1.3 986,197 + -0.8 986,203 - -0.6 986,205 - -0.2 986,217 + -0.4 986,252 + +2.1 986,252 + -0.6 986,260 - +0.2 986,281 + +2.3 986,281 + -1.4 986,478 - -0.2 986,657 - +0.7 986,726 - +4.7 986,769 + -0.9 986,777 - +0.9 986,783 + -0.2 986,844 - -0.8 986,872 + B158DRAFT_0956 0.10 +0.6 986,899 - B158DRAFT_0956 0.12 +2.9 986,917 - B158DRAFT_0956 0.14 +0.8 986,939 - B158DRAFT_0956 0.15 -0.5 986,964 + B158DRAFT_0956 0.17 +1.1 986,964 + B158DRAFT_0956 0.17 -1.3 986,964 + B158DRAFT_0956 0.17 -0.5 986,964 + B158DRAFT_0956 0.17 -0.7 986,964 + B158DRAFT_0956 0.17 +0.4 986,964 + B158DRAFT_0956 0.17 +0.8 986,964 + B158DRAFT_0956 0.17 +2.7 986,964 + B158DRAFT_0956 0.17 -1.4 986,964 + B158DRAFT_0956 0.17 -0.2 986,964 + B158DRAFT_0956 0.17 +0.6 986,964 + B158DRAFT_0956 0.17 +1.8 986,964 + B158DRAFT_0956 0.17 +1.4 986,972 - B158DRAFT_0956 0.18 -2.0 986,972 - B158DRAFT_0956 0.18 -1.2 986,972 - B158DRAFT_0956 0.18 -1.0 986,972 - B158DRAFT_0956 0.18 +0.1 986,972 - B158DRAFT_0956 0.18 -0.4 986,972 - B158DRAFT_0956 0.18 -1.2 986,972 - B158DRAFT_0956 0.18 +0.2 986,972 - B158DRAFT_0956 0.18 +0.1 986,972 - B158DRAFT_0956 0.18 +3.4 986,972 - B158DRAFT_0956 0.18 -0.2 987,070 - B158DRAFT_0956 0.24 -1.9 987,072 - B158DRAFT_0956 0.25 -3.1 987,138 + B158DRAFT_0956 0.29 +0.3 987,146 - B158DRAFT_0956 0.30 +0.2 987,167 - B158DRAFT_0956 0.31 -0.3 987,186 + B158DRAFT_0956 0.33 +1.5 987,186 + B158DRAFT_0956 0.33 -0.9 987,268 + B158DRAFT_0956 0.38 -2.1 987,317 - B158DRAFT_0956 0.42 +1.0
Or see this region's nucleotide sequence