Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0949 and B158DRAFT_0950 are separated by 1 nucleotides B158DRAFT_0950 and B158DRAFT_0951 are separated by 17 nucleotides B158DRAFT_0951 and B158DRAFT_0952 are separated by 6 nucleotides
B158DRAFT_0949: B158DRAFT_0949 - ABC-type transport system, involved in lipoprotein release, permease component, at 977,294 to 978,496
_0949
B158DRAFT_0950: B158DRAFT_0950 - ABC-type antimicrobial peptide transport system, ATPase component, at 978,498 to 979,211
_0950
B158DRAFT_0951: B158DRAFT_0951 - Cytochrome C', at 979,229 to 979,708
_0951
B158DRAFT_0952: B158DRAFT_0952 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 979,715 to 981,181
_0952
Position (kb) 979
980 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 978.299 kb on - strand, within B158DRAFT_0949 at 978.315 kb on + strand, within B158DRAFT_0949 at 978.393 kb on - strand at 978.448 kb on + strand at 978.448 kb on + strand at 978.456 kb on - strand at 978.492 kb on + strand at 978.492 kb on + strand at 978.500 kb on - strand at 978.590 kb on + strand, within B158DRAFT_0950 at 978.625 kb on - strand, within B158DRAFT_0950 at 978.658 kb on + strand, within B158DRAFT_0950 at 978.906 kb on + strand, within B158DRAFT_0950 at 978.906 kb on + strand, within B158DRAFT_0950 at 978.911 kb on + strand, within B158DRAFT_0950 at 978.925 kb on - strand, within B158DRAFT_0950 at 978.956 kb on + strand, within B158DRAFT_0950 at 979.018 kb on + strand, within B158DRAFT_0950 at 979.045 kb on + strand, within B158DRAFT_0950 at 979.193 kb on - strand at 979.198 kb on - strand at 979.198 kb on - strand at 979.225 kb on - strand at 979.320 kb on - strand, within B158DRAFT_0951 at 979.648 kb on + strand, within B158DRAFT_0951 at 979.792 kb on + strand at 979.869 kb on + strand, within B158DRAFT_0952 at 979.974 kb on + strand, within B158DRAFT_0952 at 980.010 kb on + strand, within B158DRAFT_0952 at 980.010 kb on + strand, within B158DRAFT_0952 at 980.010 kb on + strand, within B158DRAFT_0952 at 980.010 kb on + strand, within B158DRAFT_0952 at 980.018 kb on - strand, within B158DRAFT_0952 at 980.018 kb on - strand, within B158DRAFT_0952 at 980.029 kb on + strand, within B158DRAFT_0952 at 980.187 kb on + strand, within B158DRAFT_0952 at 980.195 kb on - strand, within B158DRAFT_0952 at 980.210 kb on - strand, within B158DRAFT_0952 at 980.217 kb on + strand, within B158DRAFT_0952 at 980.244 kb on + strand, within B158DRAFT_0952 at 980.247 kb on - strand, within B158DRAFT_0952 at 980.279 kb on + strand, within B158DRAFT_0952 at 980.279 kb on + strand, within B158DRAFT_0952 at 980.306 kb on + strand, within B158DRAFT_0952 at 980.308 kb on + strand, within B158DRAFT_0952 at 980.316 kb on - strand, within B158DRAFT_0952 at 980.316 kb on - strand, within B158DRAFT_0952 at 980.328 kb on + strand, within B158DRAFT_0952 at 980.422 kb on + strand, within B158DRAFT_0952 at 980.585 kb on - strand, within B158DRAFT_0952 at 980.619 kb on - strand, within B158DRAFT_0952
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 978,299 - B158DRAFT_0949 0.84 +0.7 978,315 + B158DRAFT_0949 0.85 -0.6 978,393 - -0.9 978,448 + -0.9 978,448 + -0.9 978,456 - -1.7 978,492 + -0.2 978,492 + -2.1 978,500 - +0.3 978,590 + B158DRAFT_0950 0.13 +0.6 978,625 - B158DRAFT_0950 0.18 +0.3 978,658 + B158DRAFT_0950 0.22 +0.0 978,906 + B158DRAFT_0950 0.57 -0.1 978,906 + B158DRAFT_0950 0.57 -0.1 978,911 + B158DRAFT_0950 0.58 -0.6 978,925 - B158DRAFT_0950 0.60 +0.7 978,956 + B158DRAFT_0950 0.64 -2.3 979,018 + B158DRAFT_0950 0.73 -0.5 979,045 + B158DRAFT_0950 0.77 +3.7 979,193 - -0.5 979,198 - +0.4 979,198 - +0.6 979,225 - -0.1 979,320 - B158DRAFT_0951 0.19 +0.3 979,648 + B158DRAFT_0951 0.87 -0.9 979,792 + -0.7 979,869 + B158DRAFT_0952 0.10 -1.3 979,974 + B158DRAFT_0952 0.18 +0.6 980,010 + B158DRAFT_0952 0.20 -1.2 980,010 + B158DRAFT_0952 0.20 -0.9 980,010 + B158DRAFT_0952 0.20 +1.2 980,010 + B158DRAFT_0952 0.20 -0.8 980,018 - B158DRAFT_0952 0.21 +0.0 980,018 - B158DRAFT_0952 0.21 +0.4 980,029 + B158DRAFT_0952 0.21 +0.3 980,187 + B158DRAFT_0952 0.32 +1.3 980,195 - B158DRAFT_0952 0.33 +0.3 980,210 - B158DRAFT_0952 0.34 -0.2 980,217 + B158DRAFT_0952 0.34 -1.8 980,244 + B158DRAFT_0952 0.36 -0.7 980,247 - B158DRAFT_0952 0.36 -0.4 980,279 + B158DRAFT_0952 0.38 +0.6 980,279 + B158DRAFT_0952 0.38 -0.6 980,306 + B158DRAFT_0952 0.40 +1.7 980,308 + B158DRAFT_0952 0.40 -1.1 980,316 - B158DRAFT_0952 0.41 -0.3 980,316 - B158DRAFT_0952 0.41 -1.0 980,328 + B158DRAFT_0952 0.42 -0.5 980,422 + B158DRAFT_0952 0.48 -1.8 980,585 - B158DRAFT_0952 0.59 -0.3 980,619 - B158DRAFT_0952 0.62 -0.7
Or see this region's nucleotide sequence