Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0923 and B158DRAFT_0924 are separated by 179 nucleotides B158DRAFT_0924 and B158DRAFT_0925 are separated by 101 nucleotides
B158DRAFT_0923: B158DRAFT_0923 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 950,391 to 952,358
_0923
B158DRAFT_0924: B158DRAFT_0924 - Molecular chaperone (small heat shock protein), at 952,538 to 953,029
_0924
B158DRAFT_0925: B158DRAFT_0925 - Hydrogenase/urease accessory protein, at 953,131 to 954,342
_0925
Position (kb) 952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 951.544 kb on + strand, within B158DRAFT_0923 at 951.557 kb on + strand, within B158DRAFT_0923 at 951.557 kb on + strand, within B158DRAFT_0923 at 951.565 kb on - strand, within B158DRAFT_0923 at 951.565 kb on - strand, within B158DRAFT_0923 at 951.565 kb on - strand, within B158DRAFT_0923 at 951.565 kb on - strand, within B158DRAFT_0923 at 951.640 kb on + strand, within B158DRAFT_0923 at 951.823 kb on + strand, within B158DRAFT_0923 at 951.823 kb on + strand, within B158DRAFT_0923 at 951.828 kb on + strand, within B158DRAFT_0923 at 951.831 kb on - strand, within B158DRAFT_0923 at 951.836 kb on - strand, within B158DRAFT_0923 at 951.836 kb on - strand, within B158DRAFT_0923 at 951.836 kb on - strand, within B158DRAFT_0923 at 951.836 kb on - strand, within B158DRAFT_0923 at 951.836 kb on - strand, within B158DRAFT_0923 at 951.900 kb on + strand, within B158DRAFT_0923 at 951.900 kb on + strand, within B158DRAFT_0923 at 951.908 kb on - strand, within B158DRAFT_0923 at 951.908 kb on - strand, within B158DRAFT_0923 at 951.946 kb on + strand, within B158DRAFT_0923 at 952.110 kb on + strand, within B158DRAFT_0923 at 952.202 kb on + strand at 952.250 kb on - strand at 952.393 kb on - strand at 952.485 kb on + strand at 952.485 kb on + strand at 952.493 kb on - strand at 952.567 kb on - strand at 952.609 kb on - strand, within B158DRAFT_0924 at 952.611 kb on + strand, within B158DRAFT_0924 at 952.639 kb on + strand, within B158DRAFT_0924 at 952.757 kb on + strand, within B158DRAFT_0924 at 952.765 kb on - strand, within B158DRAFT_0924 at 952.817 kb on - strand, within B158DRAFT_0924 at 952.904 kb on - strand, within B158DRAFT_0924 at 952.975 kb on - strand, within B158DRAFT_0924 at 952.989 kb on - strand at 953.058 kb on + strand at 953.203 kb on - strand at 953.203 kb on - strand at 953.203 kb on - strand at 953.203 kb on - strand at 953.203 kb on - strand at 953.230 kb on + strand at 953.238 kb on - strand at 953.322 kb on + strand, within B158DRAFT_0925 at 953.433 kb on + strand, within B158DRAFT_0925 at 953.481 kb on - strand, within B158DRAFT_0925 at 953.502 kb on + strand, within B158DRAFT_0925 at 953.502 kb on + strand, within B158DRAFT_0925 at 953.508 kb on + strand, within B158DRAFT_0925 at 953.516 kb on - strand, within B158DRAFT_0925 at 953.517 kb on - strand, within B158DRAFT_0925 at 953.530 kb on - strand, within B158DRAFT_0925 at 953.575 kb on + strand, within B158DRAFT_0925 at 953.575 kb on + strand, within B158DRAFT_0925 at 953.679 kb on - strand, within B158DRAFT_0925 at 953.803 kb on - strand, within B158DRAFT_0925 at 953.828 kb on - strand, within B158DRAFT_0925 at 953.828 kb on - strand, within B158DRAFT_0925
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 951,544 + B158DRAFT_0923 0.59 -0.3 951,557 + B158DRAFT_0923 0.59 -0.7 951,557 + B158DRAFT_0923 0.59 -2.8 951,565 - B158DRAFT_0923 0.60 +0.6 951,565 - B158DRAFT_0923 0.60 -1.2 951,565 - B158DRAFT_0923 0.60 +0.3 951,565 - B158DRAFT_0923 0.60 -0.4 951,640 + B158DRAFT_0923 0.63 +0.1 951,823 + B158DRAFT_0923 0.73 +0.9 951,823 + B158DRAFT_0923 0.73 -0.1 951,828 + B158DRAFT_0923 0.73 -1.3 951,831 - B158DRAFT_0923 0.73 +0.1 951,836 - B158DRAFT_0923 0.73 +0.8 951,836 - B158DRAFT_0923 0.73 -0.8 951,836 - B158DRAFT_0923 0.73 -1.5 951,836 - B158DRAFT_0923 0.73 -0.9 951,836 - B158DRAFT_0923 0.73 -0.5 951,900 + B158DRAFT_0923 0.77 +0.4 951,900 + B158DRAFT_0923 0.77 -1.5 951,908 - B158DRAFT_0923 0.77 -0.5 951,908 - B158DRAFT_0923 0.77 -1.1 951,946 + B158DRAFT_0923 0.79 +0.5 952,110 + B158DRAFT_0923 0.87 -0.3 952,202 + -1.8 952,250 - -0.7 952,393 - +0.2 952,485 + -0.2 952,485 + +1.4 952,493 - -0.8 952,567 - -2.2 952,609 - B158DRAFT_0924 0.14 -1.5 952,611 + B158DRAFT_0924 0.15 +0.8 952,639 + B158DRAFT_0924 0.21 -0.8 952,757 + B158DRAFT_0924 0.45 -0.9 952,765 - B158DRAFT_0924 0.46 -0.0 952,817 - B158DRAFT_0924 0.57 -0.9 952,904 - B158DRAFT_0924 0.74 -2.8 952,975 - B158DRAFT_0924 0.89 -2.1 952,989 - +0.2 953,058 + -0.4 953,203 - +0.6 953,203 - -2.1 953,203 - -0.7 953,203 - -1.7 953,203 - -0.3 953,230 + -1.7 953,238 - -1.1 953,322 + B158DRAFT_0925 0.16 +0.0 953,433 + B158DRAFT_0925 0.25 -1.3 953,481 - B158DRAFT_0925 0.29 -1.4 953,502 + B158DRAFT_0925 0.31 +2.4 953,502 + B158DRAFT_0925 0.31 +1.0 953,508 + B158DRAFT_0925 0.31 -1.9 953,516 - B158DRAFT_0925 0.32 -0.4 953,517 - B158DRAFT_0925 0.32 +3.3 953,530 - B158DRAFT_0925 0.33 -1.4 953,575 + B158DRAFT_0925 0.37 -1.9 953,575 + B158DRAFT_0925 0.37 +1.2 953,679 - B158DRAFT_0925 0.45 -0.2 953,803 - B158DRAFT_0925 0.55 -0.9 953,828 - B158DRAFT_0925 0.58 -0.9 953,828 - B158DRAFT_0925 0.58 +1.1
Or see this region's nucleotide sequence