Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0836 and B158DRAFT_0837 overlap by 1 nucleotides B158DRAFT_0837 and B158DRAFT_0838 overlap by 11 nucleotides
B158DRAFT_0836: B158DRAFT_0836 - Type II secretory pathway, component ExeA (predicted ATPase), at 846,046 to 847,779
_0836
B158DRAFT_0837: B158DRAFT_0837 - hypothetical protein, at 847,779 to 848,597
_0837
B158DRAFT_0838: B158DRAFT_0838 - Predicted Zn-dependent peptidases, at 848,587 to 851,451
_0838
Position (kb) 847
848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 846.782 kb on - strand, within B158DRAFT_0836 at 846.811 kb on - strand, within B158DRAFT_0836 at 846.811 kb on - strand, within B158DRAFT_0836 at 846.822 kb on + strand, within B158DRAFT_0836 at 846.912 kb on - strand, within B158DRAFT_0836 at 846.929 kb on + strand, within B158DRAFT_0836 at 846.937 kb on - strand, within B158DRAFT_0836 at 847.005 kb on - strand, within B158DRAFT_0836 at 847.026 kb on + strand, within B158DRAFT_0836 at 847.026 kb on + strand, within B158DRAFT_0836 at 847.026 kb on + strand, within B158DRAFT_0836 at 847.034 kb on - strand, within B158DRAFT_0836 at 847.055 kb on + strand, within B158DRAFT_0836 at 847.062 kb on + strand, within B158DRAFT_0836 at 847.179 kb on - strand, within B158DRAFT_0836 at 847.302 kb on + strand, within B158DRAFT_0836 at 847.388 kb on - strand, within B158DRAFT_0836 at 847.388 kb on - strand, within B158DRAFT_0836 at 847.388 kb on - strand, within B158DRAFT_0836 at 847.388 kb on - strand, within B158DRAFT_0836 at 847.483 kb on + strand, within B158DRAFT_0836 at 847.491 kb on - strand, within B158DRAFT_0836 at 847.491 kb on - strand, within B158DRAFT_0836 at 847.865 kb on - strand, within B158DRAFT_0837 at 848.000 kb on - strand, within B158DRAFT_0837 at 848.084 kb on + strand, within B158DRAFT_0837 at 848.220 kb on - strand, within B158DRAFT_0837 at 848.318 kb on - strand, within B158DRAFT_0837 at 848.330 kb on - strand, within B158DRAFT_0837 at 848.404 kb on + strand, within B158DRAFT_0837 at 848.411 kb on - strand, within B158DRAFT_0837 at 848.416 kb on - strand, within B158DRAFT_0837 at 848.479 kb on + strand, within B158DRAFT_0837 at 848.479 kb on + strand, within B158DRAFT_0837 at 848.487 kb on - strand, within B158DRAFT_0837 at 848.568 kb on + strand at 848.574 kb on + strand at 848.804 kb on + strand at 848.804 kb on + strand at 848.804 kb on + strand at 848.829 kb on - strand at 848.855 kb on + strand at 848.864 kb on - strand at 849.093 kb on + strand, within B158DRAFT_0838 at 849.101 kb on - strand, within B158DRAFT_0838 at 849.101 kb on - strand, within B158DRAFT_0838 at 849.101 kb on - strand, within B158DRAFT_0838 at 849.155 kb on + strand, within B158DRAFT_0838 at 849.220 kb on - strand, within B158DRAFT_0838 at 849.400 kb on + strand, within B158DRAFT_0838 at 849.418 kb on - strand, within B158DRAFT_0838 at 849.464 kb on + strand, within B158DRAFT_0838 at 849.464 kb on + strand, within B158DRAFT_0838 at 849.469 kb on + strand, within B158DRAFT_0838 at 849.469 kb on + strand, within B158DRAFT_0838 at 849.469 kb on + strand, within B158DRAFT_0838 at 849.474 kb on + strand, within B158DRAFT_0838 at 849.507 kb on + strand, within B158DRAFT_0838
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 846,782 - B158DRAFT_0836 0.42 -0.9 846,811 - B158DRAFT_0836 0.44 +0.5 846,811 - B158DRAFT_0836 0.44 -0.8 846,822 + B158DRAFT_0836 0.45 +0.4 846,912 - B158DRAFT_0836 0.50 -1.1 846,929 + B158DRAFT_0836 0.51 -0.4 846,937 - B158DRAFT_0836 0.51 +2.6 847,005 - B158DRAFT_0836 0.55 +4.3 847,026 + B158DRAFT_0836 0.57 +0.1 847,026 + B158DRAFT_0836 0.57 -0.7 847,026 + B158DRAFT_0836 0.57 -0.8 847,034 - B158DRAFT_0836 0.57 -0.8 847,055 + B158DRAFT_0836 0.58 -2.8 847,062 + B158DRAFT_0836 0.59 -1.7 847,179 - B158DRAFT_0836 0.65 -1.1 847,302 + B158DRAFT_0836 0.72 -1.1 847,388 - B158DRAFT_0836 0.77 -1.5 847,388 - B158DRAFT_0836 0.77 -0.2 847,388 - B158DRAFT_0836 0.77 -0.1 847,388 - B158DRAFT_0836 0.77 -0.2 847,483 + B158DRAFT_0836 0.83 -1.6 847,491 - B158DRAFT_0836 0.83 +0.8 847,491 - B158DRAFT_0836 0.83 -0.3 847,865 - B158DRAFT_0837 0.11 -0.9 848,000 - B158DRAFT_0837 0.27 -0.8 848,084 + B158DRAFT_0837 0.37 -1.5 848,220 - B158DRAFT_0837 0.54 -0.6 848,318 - B158DRAFT_0837 0.66 +6.3 848,330 - B158DRAFT_0837 0.67 +0.8 848,404 + B158DRAFT_0837 0.76 -1.0 848,411 - B158DRAFT_0837 0.77 +1.3 848,416 - B158DRAFT_0837 0.78 -1.6 848,479 + B158DRAFT_0837 0.85 +0.5 848,479 + B158DRAFT_0837 0.85 -2.2 848,487 - B158DRAFT_0837 0.86 -0.6 848,568 + +0.3 848,574 + -2.4 848,804 + -1.1 848,804 + -1.1 848,804 + +2.1 848,829 - -0.7 848,855 + -0.4 848,864 - -2.2 849,093 + B158DRAFT_0838 0.18 -2.0 849,101 - B158DRAFT_0838 0.18 +0.1 849,101 - B158DRAFT_0838 0.18 +0.0 849,101 - B158DRAFT_0838 0.18 -0.8 849,155 + B158DRAFT_0838 0.20 -1.2 849,220 - B158DRAFT_0838 0.22 -2.2 849,400 + B158DRAFT_0838 0.28 -2.2 849,418 - B158DRAFT_0838 0.29 -0.4 849,464 + B158DRAFT_0838 0.31 +1.0 849,464 + B158DRAFT_0838 0.31 -0.3 849,469 + B158DRAFT_0838 0.31 -0.4 849,469 + B158DRAFT_0838 0.31 -1.7 849,469 + B158DRAFT_0838 0.31 -0.9 849,474 + B158DRAFT_0838 0.31 +0.6 849,507 + B158DRAFT_0838 0.32 +0.4
Or see this region's nucleotide sequence