Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0672

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0670 and B158DRAFT_0671 overlap by 8 nucleotidesB158DRAFT_0671 and B158DRAFT_0672 are separated by 18 nucleotidesB158DRAFT_0672 and B158DRAFT_0674 are separated by 285 nucleotides B158DRAFT_0670: B158DRAFT_0670 - Uncharacterized protein required for cytochrome oxidase assembly, at 672,866 to 673,975 _0670 B158DRAFT_0671: B158DRAFT_0671 - protoheme IX farnesyltransferase, at 673,968 to 674,915 _0671 B158DRAFT_0672: B158DRAFT_0672 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 674,934 to 675,584 _0672 B158DRAFT_0674: B158DRAFT_0674 - putative efflux protein, MATE family, at 675,870 to 677,246 _0674 Position (kb) 674 675 676Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 673.959 kb on + strandat 674.024 kb on - strandat 674.063 kb on + strand, within B158DRAFT_0671at 674.100 kb on - strand, within B158DRAFT_0671at 674.116 kb on - strand, within B158DRAFT_0671at 674.162 kb on - strand, within B158DRAFT_0671at 674.169 kb on + strand, within B158DRAFT_0671at 674.177 kb on - strand, within B158DRAFT_0671at 674.214 kb on + strand, within B158DRAFT_0671at 674.231 kb on + strand, within B158DRAFT_0671at 674.254 kb on - strand, within B158DRAFT_0671at 674.373 kb on + strand, within B158DRAFT_0671at 674.374 kb on + strand, within B158DRAFT_0671at 674.397 kb on + strand, within B158DRAFT_0671at 674.527 kb on - strand, within B158DRAFT_0671at 674.527 kb on - strand, within B158DRAFT_0671at 674.766 kb on - strand, within B158DRAFT_0671at 674.830 kb on + strandat 674.838 kb on - strandat 674.838 kb on - strandat 675.105 kb on + strand, within B158DRAFT_0672at 675.172 kb on + strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.244 kb on + strand, within B158DRAFT_0672at 675.341 kb on + strand, within B158DRAFT_0672at 675.479 kb on - strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.527 kb on - strandat 675.527 kb on - strandat 675.535 kb on + strandat 675.550 kb on - strandat 675.586 kb on - strandat 675.785 kb on - strandat 675.850 kb on - strandat 675.869 kb on - strandat 675.883 kb on - strandat 675.903 kb on + strandat 675.913 kb on + strandat 675.913 kb on + strandat 675.918 kb on + strandat 675.921 kb on - strandat 676.054 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.155 kb on + strand, within B158DRAFT_0674at 676.189 kb on + strand, within B158DRAFT_0674at 676.252 kb on + strand, within B158DRAFT_0674at 676.280 kb on - strand, within B158DRAFT_0674at 676.284 kb on + strand, within B158DRAFT_0674at 676.285 kb on - strand, within B158DRAFT_0674at 676.302 kb on + strand, within B158DRAFT_0674at 676.310 kb on - strand, within B158DRAFT_0674at 676.447 kb on + strand, within B158DRAFT_0674at 676.468 kb on + strand, within B158DRAFT_0674at 676.476 kb on - strand, within B158DRAFT_0674at 676.478 kb on + strand, within B158DRAFT_0674at 676.481 kb on - strand, within B158DRAFT_0674at 676.497 kb on - strand, within B158DRAFT_0674at 676.507 kb on - strand, within B158DRAFT_0674at 676.512 kb on - strand, within B158DRAFT_0674

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
673,959 + -0.6
674,024 - -1.4
674,063 + B158DRAFT_0671 0.10 +1.8
674,100 - B158DRAFT_0671 0.14 +0.3
674,116 - B158DRAFT_0671 0.16 -0.7
674,162 - B158DRAFT_0671 0.20 +1.6
674,169 + B158DRAFT_0671 0.21 -0.3
674,177 - B158DRAFT_0671 0.22 +0.3
674,214 + B158DRAFT_0671 0.26 -1.1
674,231 + B158DRAFT_0671 0.28 +0.2
674,254 - B158DRAFT_0671 0.30 +2.3
674,373 + B158DRAFT_0671 0.43 +0.8
674,374 + B158DRAFT_0671 0.43 +0.1
674,397 + B158DRAFT_0671 0.45 +0.4
674,527 - B158DRAFT_0671 0.59 -0.4
674,527 - B158DRAFT_0671 0.59 +0.3
674,766 - B158DRAFT_0671 0.84 -0.5
674,830 + -0.3
674,838 - -0.2
674,838 - -0.2
675,105 + B158DRAFT_0672 0.26 -0.6
675,172 + B158DRAFT_0672 0.37 -0.6
675,180 - B158DRAFT_0672 0.38 -0.1
675,180 - B158DRAFT_0672 0.38 +0.1
675,244 + B158DRAFT_0672 0.48 -1.6
675,341 + B158DRAFT_0672 0.63 +1.1
675,479 - B158DRAFT_0672 0.84 +1.1
675,492 + B158DRAFT_0672 0.86 +0.7
675,492 + B158DRAFT_0672 0.86 -0.2
675,500 - B158DRAFT_0672 0.87 -0.7
675,500 - B158DRAFT_0672 0.87 +1.3
675,500 - B158DRAFT_0672 0.87 -0.5
675,519 + B158DRAFT_0672 0.90 +0.9
675,519 + B158DRAFT_0672 0.90 -0.5
675,527 - +1.4
675,527 - -0.5
675,535 + +2.1
675,550 - -1.4
675,586 - +0.5
675,785 - -1.5
675,850 - +0.5
675,869 - +1.4
675,883 - -0.0
675,903 + -0.5
675,913 + +2.9
675,913 + -0.3
675,918 + -0.1
675,921 - +1.6
676,054 + B158DRAFT_0674 0.13 -0.3
676,127 + B158DRAFT_0674 0.19 -0.9
676,127 + B158DRAFT_0674 0.19 +1.2
676,127 + B158DRAFT_0674 0.19 -0.9
676,127 + B158DRAFT_0674 0.19 -0.3
676,127 + B158DRAFT_0674 0.19 +0.1
676,127 + B158DRAFT_0674 0.19 +0.4
676,127 + B158DRAFT_0674 0.19 +2.0
676,127 + B158DRAFT_0674 0.19 -0.6
676,127 + B158DRAFT_0674 0.19 -1.3
676,127 + B158DRAFT_0674 0.19 +1.2
676,127 + B158DRAFT_0674 0.19 -0.8
676,127 + B158DRAFT_0674 0.19 -2.1
676,127 + B158DRAFT_0674 0.19 +0.5
676,135 - B158DRAFT_0674 0.19 -1.4
676,135 - B158DRAFT_0674 0.19 -0.9
676,135 - B158DRAFT_0674 0.19 +0.2
676,135 - B158DRAFT_0674 0.19 -0.2
676,135 - B158DRAFT_0674 0.19 -0.5
676,135 - B158DRAFT_0674 0.19 +0.1
676,135 - B158DRAFT_0674 0.19 +0.4
676,135 - B158DRAFT_0674 0.19 -0.8
676,135 - B158DRAFT_0674 0.19 -1.5
676,135 - B158DRAFT_0674 0.19 +5.8
676,155 + B158DRAFT_0674 0.21 -0.1
676,189 + B158DRAFT_0674 0.23 +0.5
676,252 + B158DRAFT_0674 0.28 +0.3
676,280 - B158DRAFT_0674 0.30 -0.6
676,284 + B158DRAFT_0674 0.30 -0.4
676,285 - B158DRAFT_0674 0.30 +0.1
676,302 + B158DRAFT_0674 0.31 -1.2
676,310 - B158DRAFT_0674 0.32 -0.9
676,447 + B158DRAFT_0674 0.42 -0.4
676,468 + B158DRAFT_0674 0.43 -1.2
676,476 - B158DRAFT_0674 0.44 -0.3
676,478 + B158DRAFT_0674 0.44 -1.9
676,481 - B158DRAFT_0674 0.44 -1.3
676,497 - B158DRAFT_0674 0.46 -0.1
676,507 - B158DRAFT_0674 0.46 +0.0
676,512 - B158DRAFT_0674 0.47 -0.1

Or see this region's nucleotide sequence