Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0616 and B158DRAFT_0617 overlap by 4 nucleotides B158DRAFT_0617 and B158DRAFT_0618 overlap by 4 nucleotides B158DRAFT_0618 and B158DRAFT_0619 are separated by 148 nucleotides B158DRAFT_0619 and B158DRAFT_0620 are separated by 176 nucleotides
B158DRAFT_0616: B158DRAFT_0616 - carbamoyl-phosphate synthase, large subunit, at 623,970 to 627,194
_0616
B158DRAFT_0617: B158DRAFT_0617 - transcription elongation factor GreA, at 627,191 to 627,673
_0617
B158DRAFT_0618: B158DRAFT_0618 - Predicted transcriptional regulators, at 627,670 to 628,251
_0618
B158DRAFT_0619: B158DRAFT_0619 - hypothetical protein, at 628,400 to 628,909
_0619
B158DRAFT_0620: B158DRAFT_0620 - Uncharacterized conserved protein, at 629,086 to 630,033
_0620
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 626.869 kb on + strand, within B158DRAFT_0616 at 626.869 kb on + strand, within B158DRAFT_0616 at 627.139 kb on + strand at 627.142 kb on - strand at 627.149 kb on + strand at 627.210 kb on - strand at 627.229 kb on + strand at 627.267 kb on + strand, within B158DRAFT_0617 at 627.331 kb on + strand, within B158DRAFT_0617 at 627.360 kb on - strand, within B158DRAFT_0617 at 627.464 kb on - strand, within B158DRAFT_0617 at 627.632 kb on - strand at 627.667 kb on - strand at 627.904 kb on - strand, within B158DRAFT_0618 at 627.910 kb on + strand, within B158DRAFT_0618 at 627.958 kb on + strand, within B158DRAFT_0618 at 627.984 kb on + strand, within B158DRAFT_0618 at 627.984 kb on + strand, within B158DRAFT_0618 at 627.992 kb on - strand, within B158DRAFT_0618 at 627.992 kb on - strand, within B158DRAFT_0618 at 628.065 kb on + strand, within B158DRAFT_0618 at 628.087 kb on + strand, within B158DRAFT_0618 at 628.123 kb on + strand, within B158DRAFT_0618 at 628.133 kb on + strand, within B158DRAFT_0618 at 628.135 kb on - strand, within B158DRAFT_0618 at 628.198 kb on - strand at 628.506 kb on - strand, within B158DRAFT_0619 at 628.673 kb on - strand, within B158DRAFT_0619 at 628.675 kb on + strand, within B158DRAFT_0619 at 628.937 kb on - strand at 629.029 kb on + strand at 629.037 kb on - strand at 629.037 kb on - strand at 629.037 kb on - strand at 629.179 kb on - strand at 629.192 kb on + strand, within B158DRAFT_0620 at 629.230 kb on + strand, within B158DRAFT_0620 at 629.238 kb on - strand, within B158DRAFT_0620
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 626,869 + B158DRAFT_0616 0.90 +1.1 626,869 + B158DRAFT_0616 0.90 +3.2 627,139 + +2.5 627,142 - -0.5 627,149 + -0.7 627,210 - +1.0 627,229 + -0.4 627,267 + B158DRAFT_0617 0.16 -0.8 627,331 + B158DRAFT_0617 0.29 +0.5 627,360 - B158DRAFT_0617 0.35 -0.9 627,464 - B158DRAFT_0617 0.57 -0.2 627,632 - -1.0 627,667 - +1.5 627,904 - B158DRAFT_0618 0.40 -0.9 627,910 + B158DRAFT_0618 0.41 -0.5 627,958 + B158DRAFT_0618 0.49 -1.7 627,984 + B158DRAFT_0618 0.54 -1.9 627,984 + B158DRAFT_0618 0.54 -0.7 627,992 - B158DRAFT_0618 0.55 +0.2 627,992 - B158DRAFT_0618 0.55 +0.3 628,065 + B158DRAFT_0618 0.68 -0.3 628,087 + B158DRAFT_0618 0.72 -0.1 628,123 + B158DRAFT_0618 0.78 +0.0 628,133 + B158DRAFT_0618 0.80 +1.6 628,135 - B158DRAFT_0618 0.80 -2.5 628,198 - -1.1 628,506 - B158DRAFT_0619 0.21 +1.5 628,673 - B158DRAFT_0619 0.54 -0.9 628,675 + B158DRAFT_0619 0.54 +0.5 628,937 - -0.6 629,029 + -0.5 629,037 - -2.0 629,037 - -0.4 629,037 - +0.7 629,179 - -0.5 629,192 + B158DRAFT_0620 0.11 +0.5 629,230 + B158DRAFT_0620 0.15 -0.3 629,238 - B158DRAFT_0620 0.16 +1.2
Or see this region's nucleotide sequence