Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0589 and B158DRAFT_0590 are separated by 58 nucleotides B158DRAFT_0590 and B158DRAFT_0591 are separated by 220 nucleotides
B158DRAFT_0589: B158DRAFT_0589 - hypothetical protein, at 593,659 to 594,528
_0589
B158DRAFT_0590: B158DRAFT_0590 - hypothetical protein, at 594,587 to 595,435
_0590
B158DRAFT_0591: B158DRAFT_0591 - Uncharacterized conserved protein, at 595,656 to 597,449
_0591
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 593.606 kb on + strand at 593.624 kb on + strand at 593.625 kb on + strand at 593.625 kb on + strand at 593.632 kb on - strand at 593.632 kb on - strand at 593.632 kb on - strand at 593.633 kb on - strand at 593.633 kb on - strand at 593.675 kb on + strand at 593.675 kb on + strand at 593.675 kb on + strand at 593.680 kb on + strand at 593.680 kb on + strand at 593.683 kb on - strand at 593.683 kb on - strand at 593.688 kb on - strand at 593.726 kb on + strand at 593.777 kb on + strand, within B158DRAFT_0589 at 593.807 kb on + strand, within B158DRAFT_0589 at 593.830 kb on - strand, within B158DRAFT_0589 at 593.880 kb on + strand, within B158DRAFT_0589 at 593.910 kb on + strand, within B158DRAFT_0589 at 593.940 kb on - strand, within B158DRAFT_0589 at 593.981 kb on - strand, within B158DRAFT_0589 at 593.981 kb on - strand, within B158DRAFT_0589 at 593.981 kb on - strand, within B158DRAFT_0589 at 593.981 kb on - strand, within B158DRAFT_0589 at 593.981 kb on - strand, within B158DRAFT_0589 at 594.027 kb on + strand, within B158DRAFT_0589 at 594.027 kb on + strand, within B158DRAFT_0589 at 594.035 kb on - strand, within B158DRAFT_0589 at 594.035 kb on - strand, within B158DRAFT_0589 at 594.035 kb on - strand, within B158DRAFT_0589 at 594.086 kb on + strand, within B158DRAFT_0589 at 594.094 kb on - strand, within B158DRAFT_0589 at 594.191 kb on + strand, within B158DRAFT_0589 at 594.229 kb on + strand, within B158DRAFT_0589 at 594.229 kb on + strand, within B158DRAFT_0589 at 594.237 kb on - strand, within B158DRAFT_0589 at 594.237 kb on - strand, within B158DRAFT_0589 at 594.237 kb on - strand, within B158DRAFT_0589 at 594.258 kb on + strand, within B158DRAFT_0589 at 594.266 kb on + strand, within B158DRAFT_0589 at 594.266 kb on + strand, within B158DRAFT_0589 at 594.266 kb on + strand, within B158DRAFT_0589 at 594.266 kb on + strand, within B158DRAFT_0589 at 594.268 kb on - strand, within B158DRAFT_0589 at 594.273 kb on - strand, within B158DRAFT_0589 at 594.274 kb on - strand, within B158DRAFT_0589 at 594.274 kb on - strand, within B158DRAFT_0589 at 594.274 kb on - strand, within B158DRAFT_0589 at 594.276 kb on - strand, within B158DRAFT_0589 at 594.333 kb on - strand, within B158DRAFT_0589 at 594.351 kb on + strand, within B158DRAFT_0589 at 594.352 kb on - strand, within B158DRAFT_0589 at 594.352 kb on - strand, within B158DRAFT_0589 at 594.359 kb on - strand, within B158DRAFT_0589 at 594.381 kb on + strand, within B158DRAFT_0589 at 594.396 kb on + strand, within B158DRAFT_0589 at 594.411 kb on - strand, within B158DRAFT_0589 at 594.481 kb on - strand at 594.485 kb on + strand at 594.522 kb on + strand at 594.530 kb on - strand at 594.612 kb on + strand at 594.612 kb on + strand at 594.612 kb on + strand at 594.612 kb on + strand at 594.620 kb on - strand at 594.620 kb on - strand at 594.620 kb on - strand at 594.620 kb on - strand at 594.620 kb on - strand at 594.620 kb on - strand at 594.620 kb on - strand at 594.620 kb on - strand at 594.622 kb on + strand at 594.646 kb on - strand at 594.780 kb on - strand, within B158DRAFT_0590 at 594.842 kb on + strand, within B158DRAFT_0590 at 594.844 kb on + strand, within B158DRAFT_0590 at 594.860 kb on - strand, within B158DRAFT_0590 at 594.879 kb on - strand, within B158DRAFT_0590 at 594.887 kb on - strand, within B158DRAFT_0590 at 594.887 kb on - strand, within B158DRAFT_0590 at 594.889 kb on - strand, within B158DRAFT_0590 at 595.086 kb on + strand, within B158DRAFT_0590 at 595.163 kb on - strand, within B158DRAFT_0590 at 595.185 kb on - strand, within B158DRAFT_0590 at 595.219 kb on + strand, within B158DRAFT_0590 at 595.233 kb on - strand, within B158DRAFT_0590 at 595.249 kb on - strand, within B158DRAFT_0590 at 595.328 kb on + strand, within B158DRAFT_0590 at 595.345 kb on - strand, within B158DRAFT_0590 at 595.447 kb on + strand at 595.504 kb on - strand at 595.504 kb on - strand at 595.504 kb on - strand at 595.511 kb on - strand at 595.516 kb on + strand at 595.516 kb on + strand at 595.555 kb on + strand at 595.568 kb on + strand at 595.575 kb on + strand at 595.575 kb on + strand at 595.584 kb on - strand at 595.626 kb on + strand at 595.631 kb on + strand at 595.639 kb on - strand at 595.641 kb on + strand at 595.649 kb on - strand at 595.649 kb on - strand at 595.676 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.691 kb on + strand at 595.699 kb on - strand at 595.699 kb on - strand at 595.699 kb on - strand at 595.699 kb on - strand at 595.699 kb on - strand at 595.699 kb on - strand at 595.699 kb on - strand at 595.756 kb on + strand at 595.764 kb on - strand at 595.775 kb on + strand at 595.863 kb on + strand, within B158DRAFT_0591 at 595.954 kb on + strand, within B158DRAFT_0591 at 595.956 kb on + strand, within B158DRAFT_0591 at 596.052 kb on - strand, within B158DRAFT_0591 at 596.128 kb on + strand, within B158DRAFT_0591 at 596.138 kb on + strand, within B158DRAFT_0591 at 596.146 kb on - strand, within B158DRAFT_0591 at 596.146 kb on - strand, within B158DRAFT_0591 at 596.147 kb on - strand, within B158DRAFT_0591 at 596.195 kb on + strand, within B158DRAFT_0591 at 596.203 kb on - strand, within B158DRAFT_0591 at 596.203 kb on - strand, within B158DRAFT_0591 at 596.240 kb on + strand, within B158DRAFT_0591 at 596.240 kb on + strand, within B158DRAFT_0591 at 596.265 kb on + strand, within B158DRAFT_0591 at 596.308 kb on + strand, within B158DRAFT_0591 at 596.309 kb on + strand, within B158DRAFT_0591 at 596.316 kb on - strand, within B158DRAFT_0591 at 596.316 kb on - strand, within B158DRAFT_0591 at 596.318 kb on + strand, within B158DRAFT_0591 at 596.318 kb on + strand, within B158DRAFT_0591 at 596.326 kb on - strand, within B158DRAFT_0591 at 596.326 kb on - strand, within B158DRAFT_0591 at 596.326 kb on - strand, within B158DRAFT_0591 at 596.326 kb on - strand, within B158DRAFT_0591 at 596.328 kb on - strand, within B158DRAFT_0591 at 596.387 kb on + strand, within B158DRAFT_0591 at 596.387 kb on + strand, within B158DRAFT_0591 at 596.388 kb on + strand, within B158DRAFT_0591 at 596.405 kb on + strand, within B158DRAFT_0591 at 596.405 kb on + strand, within B158DRAFT_0591 at 596.405 kb on + strand, within B158DRAFT_0591 at 596.405 kb on + strand, within B158DRAFT_0591 at 596.405 kb on + strand, within B158DRAFT_0591 at 596.413 kb on - strand, within B158DRAFT_0591 at 596.418 kb on - strand, within B158DRAFT_0591
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 593,606 + -0.4 593,624 + -0.0 593,625 + -1.6 593,625 + -1.2 593,632 - -1.2 593,632 - -0.3 593,632 - +0.6 593,633 - -1.3 593,633 - -0.5 593,675 + -0.6 593,675 + -1.3 593,675 + -1.8 593,680 + -1.0 593,680 + +0.1 593,683 - -0.9 593,683 - -0.9 593,688 - -0.3 593,726 + +0.5 593,777 + B158DRAFT_0589 0.14 +3.0 593,807 + B158DRAFT_0589 0.17 +2.6 593,830 - B158DRAFT_0589 0.20 -1.2 593,880 + B158DRAFT_0589 0.25 +0.2 593,910 + B158DRAFT_0589 0.29 -0.2 593,940 - B158DRAFT_0589 0.32 -0.2 593,981 - B158DRAFT_0589 0.37 +0.3 593,981 - B158DRAFT_0589 0.37 +0.4 593,981 - B158DRAFT_0589 0.37 +0.8 593,981 - B158DRAFT_0589 0.37 +0.4 593,981 - B158DRAFT_0589 0.37 -0.6 594,027 + B158DRAFT_0589 0.42 +0.4 594,027 + B158DRAFT_0589 0.42 -1.4 594,035 - B158DRAFT_0589 0.43 -0.4 594,035 - B158DRAFT_0589 0.43 -1.9 594,035 - B158DRAFT_0589 0.43 -1.5 594,086 + B158DRAFT_0589 0.49 -1.4 594,094 - B158DRAFT_0589 0.50 -1.5 594,191 + B158DRAFT_0589 0.61 -0.6 594,229 + B158DRAFT_0589 0.66 -0.9 594,229 + B158DRAFT_0589 0.66 +4.2 594,237 - B158DRAFT_0589 0.66 -0.7 594,237 - B158DRAFT_0589 0.66 +0.2 594,237 - B158DRAFT_0589 0.66 -0.0 594,258 + B158DRAFT_0589 0.69 -0.9 594,266 + B158DRAFT_0589 0.70 -0.9 594,266 + B158DRAFT_0589 0.70 -1.6 594,266 + B158DRAFT_0589 0.70 -0.2 594,266 + B158DRAFT_0589 0.70 -1.0 594,268 - B158DRAFT_0589 0.70 +0.4 594,273 - B158DRAFT_0589 0.71 -0.7 594,274 - B158DRAFT_0589 0.71 -1.6 594,274 - B158DRAFT_0589 0.71 +0.3 594,274 - B158DRAFT_0589 0.71 +0.4 594,276 - B158DRAFT_0589 0.71 -1.0 594,333 - B158DRAFT_0589 0.77 -1.0 594,351 + B158DRAFT_0589 0.80 -0.9 594,352 - B158DRAFT_0589 0.80 +0.4 594,352 - B158DRAFT_0589 0.80 -0.6 594,359 - B158DRAFT_0589 0.80 +1.2 594,381 + B158DRAFT_0589 0.83 +0.2 594,396 + B158DRAFT_0589 0.85 +2.8 594,411 - B158DRAFT_0589 0.86 -0.6 594,481 - -1.0 594,485 + +0.6 594,522 + -0.6 594,530 - +3.9 594,612 + +0.4 594,612 + -0.9 594,612 + +0.3 594,612 + -0.1 594,620 - +0.0 594,620 - +0.1 594,620 - -0.8 594,620 - +2.2 594,620 - +2.1 594,620 - +0.0 594,620 - +0.9 594,620 - +1.1 594,622 + +1.1 594,646 - -0.6 594,780 - B158DRAFT_0590 0.23 -1.2 594,842 + B158DRAFT_0590 0.30 -0.1 594,844 + B158DRAFT_0590 0.30 +0.5 594,860 - B158DRAFT_0590 0.32 +0.4 594,879 - B158DRAFT_0590 0.34 +0.6 594,887 - B158DRAFT_0590 0.35 -0.1 594,887 - B158DRAFT_0590 0.35 -0.6 594,889 - B158DRAFT_0590 0.36 -0.3 595,086 + B158DRAFT_0590 0.59 -0.1 595,163 - B158DRAFT_0590 0.68 +0.2 595,185 - B158DRAFT_0590 0.70 -0.9 595,219 + B158DRAFT_0590 0.74 -0.2 595,233 - B158DRAFT_0590 0.76 -0.4 595,249 - B158DRAFT_0590 0.78 -0.9 595,328 + B158DRAFT_0590 0.87 -0.7 595,345 - B158DRAFT_0590 0.89 +1.1 595,447 + -0.0 595,504 - -1.2 595,504 - +0.3 595,504 - -1.7 595,511 - -0.5 595,516 + +0.3 595,516 + -2.0 595,555 + -0.9 595,568 + +1.3 595,575 + -0.5 595,575 + +1.2 595,584 - -1.6 595,626 + -1.2 595,631 + -1.3 595,639 - -0.3 595,641 + -0.6 595,649 - -0.8 595,649 - +0.1 595,676 + +0.1 595,691 + -0.5 595,691 + -0.1 595,691 + +3.2 595,691 + +0.8 595,691 + -0.4 595,691 + +1.0 595,691 + +3.8 595,691 + -1.3 595,691 + -2.7 595,691 + -1.1 595,699 - +0.9 595,699 - +0.7 595,699 - -1.2 595,699 - -1.2 595,699 - -2.3 595,699 - -2.1 595,699 - -1.0 595,756 + +0.3 595,764 - +0.0 595,775 + -2.1 595,863 + B158DRAFT_0591 0.12 -2.1 595,954 + B158DRAFT_0591 0.17 +0.3 595,956 + B158DRAFT_0591 0.17 -2.3 596,052 - B158DRAFT_0591 0.22 -1.5 596,128 + B158DRAFT_0591 0.26 -0.8 596,138 + B158DRAFT_0591 0.27 -0.5 596,146 - B158DRAFT_0591 0.27 +2.3 596,146 - B158DRAFT_0591 0.27 -0.9 596,147 - B158DRAFT_0591 0.27 +0.3 596,195 + B158DRAFT_0591 0.30 -0.9 596,203 - B158DRAFT_0591 0.30 -0.4 596,203 - B158DRAFT_0591 0.30 -0.3 596,240 + B158DRAFT_0591 0.33 -1.4 596,240 + B158DRAFT_0591 0.33 -0.9 596,265 + B158DRAFT_0591 0.34 -0.9 596,308 + B158DRAFT_0591 0.36 +0.5 596,309 + B158DRAFT_0591 0.36 -0.5 596,316 - B158DRAFT_0591 0.37 -2.8 596,316 - B158DRAFT_0591 0.37 +1.0 596,318 + B158DRAFT_0591 0.37 -1.8 596,318 + B158DRAFT_0591 0.37 -0.7 596,326 - B158DRAFT_0591 0.37 +0.0 596,326 - B158DRAFT_0591 0.37 -0.4 596,326 - B158DRAFT_0591 0.37 -0.6 596,326 - B158DRAFT_0591 0.37 -2.6 596,328 - B158DRAFT_0591 0.37 +0.5 596,387 + B158DRAFT_0591 0.41 -0.2 596,387 + B158DRAFT_0591 0.41 -0.7 596,388 + B158DRAFT_0591 0.41 -0.1 596,405 + B158DRAFT_0591 0.42 +0.4 596,405 + B158DRAFT_0591 0.42 +0.2 596,405 + B158DRAFT_0591 0.42 -1.5 596,405 + B158DRAFT_0591 0.42 +0.6 596,405 + B158DRAFT_0591 0.42 -1.0 596,413 - B158DRAFT_0591 0.42 -1.3 596,418 - B158DRAFT_0591 0.42 +0.2
Or see this region's nucleotide sequence