Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0541 and B158DRAFT_0542 are separated by 90 nucleotides B158DRAFT_0542 and B158DRAFT_0543 are separated by 103 nucleotides B158DRAFT_0543 and B158DRAFT_0544 are separated by 130 nucleotides B158DRAFT_0544 and B158DRAFT_0545 are separated by 305 nucleotides
B158DRAFT_0541: B158DRAFT_0541 - ABC-type Fe3+ transport system, permease component, at 546,426 to 548,072
_0541
B158DRAFT_0542: B158DRAFT_0542 - N-acetylglutamate synthase and related acetyltransferases, at 548,163 to 548,624
_0542
B158DRAFT_0543: B158DRAFT_0543 - glycine cleavage system T protein, at 548,728 to 549,816
_0543
B158DRAFT_0544: B158DRAFT_0544 - glycine cleavage system H protein, at 549,947 to 550,336
_0544
B158DRAFT_0545: B158DRAFT_0545 - glycine dehydrogenase (decarboxylating), at 550,642 to 553,527
_0545
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 548.200 kb on - strand at 548.279 kb on + strand, within B158DRAFT_0542 at 548.287 kb on + strand, within B158DRAFT_0542 at 548.295 kb on - strand, within B158DRAFT_0542 at 548.323 kb on + strand, within B158DRAFT_0542 at 548.323 kb on + strand, within B158DRAFT_0542 at 548.331 kb on - strand, within B158DRAFT_0542 at 548.386 kb on + strand, within B158DRAFT_0542 at 548.399 kb on - strand, within B158DRAFT_0542 at 548.399 kb on - strand, within B158DRAFT_0542 at 548.435 kb on + strand, within B158DRAFT_0542 at 548.435 kb on + strand, within B158DRAFT_0542 at 548.461 kb on - strand, within B158DRAFT_0542 at 548.467 kb on + strand, within B158DRAFT_0542 at 548.508 kb on - strand, within B158DRAFT_0542 at 548.526 kb on + strand, within B158DRAFT_0542 at 548.534 kb on + strand, within B158DRAFT_0542 at 548.534 kb on - strand, within B158DRAFT_0542 at 548.536 kb on + strand, within B158DRAFT_0542 at 548.544 kb on - strand, within B158DRAFT_0542 at 548.584 kb on + strand at 548.584 kb on + strand at 548.592 kb on - strand at 548.598 kb on + strand at 548.609 kb on + strand at 548.686 kb on + strand at 549.088 kb on + strand, within B158DRAFT_0543 at 549.780 kb on + strand at 549.810 kb on + strand at 549.810 kb on + strand at 549.834 kb on - strand at 550.227 kb on - strand, within B158DRAFT_0544 at 550.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 548,200 - +1.2 548,279 + B158DRAFT_0542 0.25 -1.0 548,287 + B158DRAFT_0542 0.27 -0.1 548,295 - B158DRAFT_0542 0.29 +0.3 548,323 + B158DRAFT_0542 0.35 -0.8 548,323 + B158DRAFT_0542 0.35 -0.8 548,331 - B158DRAFT_0542 0.36 -0.6 548,386 + B158DRAFT_0542 0.48 +1.4 548,399 - B158DRAFT_0542 0.51 -0.5 548,399 - B158DRAFT_0542 0.51 -0.3 548,435 + B158DRAFT_0542 0.59 -0.3 548,435 + B158DRAFT_0542 0.59 -1.5 548,461 - B158DRAFT_0542 0.65 +0.4 548,467 + B158DRAFT_0542 0.66 -0.2 548,508 - B158DRAFT_0542 0.75 +0.5 548,526 + B158DRAFT_0542 0.79 -1.3 548,534 + B158DRAFT_0542 0.80 +2.2 548,534 - B158DRAFT_0542 0.80 -0.1 548,536 + B158DRAFT_0542 0.81 -0.8 548,544 - B158DRAFT_0542 0.82 -2.0 548,584 + -0.2 548,584 + -0.6 548,592 - -0.8 548,598 + +2.0 548,609 + -0.7 548,686 + -1.3 549,088 + B158DRAFT_0543 0.33 +1.8 549,780 + +0.9 549,810 + -0.9 549,810 + -0.4 549,834 - +0.1 550,227 - B158DRAFT_0544 0.72 +1.5 550,324 - +1.1
Or see this region's nucleotide sequence