Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0397 and B158DRAFT_0398 are separated by 11 nucleotides B158DRAFT_0398 and B158DRAFT_0399 are separated by 294 nucleotides
B158DRAFT_0397: B158DRAFT_0397 - methionyl-tRNA formyltransferase (EC 2.1.2.9), at 403,178 to 404,137
_0397
B158DRAFT_0398: B158DRAFT_0398 - peptide deformylase, at 404,149 to 404,649
_0398
B158DRAFT_0399: B158DRAFT_0399 - LysM domain., at 404,944 to 405,981
_0399
Position (kb) 404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 403.150 kb on - strand at 403.160 kb on - strand at 404.205 kb on - strand, within B158DRAFT_0398 at 404.727 kb on - strand at 404.779 kb on - strand at 404.831 kb on + strand at 404.844 kb on - strand at 404.861 kb on + strand at 404.911 kb on - strand at 405.008 kb on + strand at 405.008 kb on + strand at 405.036 kb on - strand at 405.038 kb on + strand at 405.044 kb on - strand at 405.054 kb on + strand, within B158DRAFT_0399 at 405.054 kb on - strand, within B158DRAFT_0399 at 405.198 kb on + strand, within B158DRAFT_0399 at 405.206 kb on - strand, within B158DRAFT_0399 at 405.227 kb on + strand, within B158DRAFT_0399 at 405.235 kb on - strand, within B158DRAFT_0399 at 405.278 kb on + strand, within B158DRAFT_0399 at 405.414 kb on + strand, within B158DRAFT_0399 at 405.414 kb on + strand, within B158DRAFT_0399 at 405.469 kb on + strand, within B158DRAFT_0399 at 405.645 kb on + strand, within B158DRAFT_0399
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 403,150 - -0.9 403,160 - +0.6 404,205 - B158DRAFT_0398 0.11 +1.2 404,727 - -1.2 404,779 - +0.0 404,831 + -3.7 404,844 - -0.3 404,861 + -0.6 404,911 - -0.0 405,008 + +0.1 405,008 + +0.5 405,036 - -1.2 405,038 + +0.0 405,044 - -1.2 405,054 + B158DRAFT_0399 0.11 -0.7 405,054 - B158DRAFT_0399 0.11 -1.3 405,198 + B158DRAFT_0399 0.24 +1.2 405,206 - B158DRAFT_0399 0.25 +1.5 405,227 + B158DRAFT_0399 0.27 -1.3 405,235 - B158DRAFT_0399 0.28 -1.1 405,278 + B158DRAFT_0399 0.32 -0.6 405,414 + B158DRAFT_0399 0.45 -1.0 405,414 + B158DRAFT_0399 0.45 -0.8 405,469 + B158DRAFT_0399 0.51 -1.7 405,645 + B158DRAFT_0399 0.68 -0.5
Or see this region's nucleotide sequence