Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0374 and B158DRAFT_0375 are separated by 240 nucleotides B158DRAFT_0375 and B158DRAFT_0376 are separated by 38 nucleotides
B158DRAFT_0374: B158DRAFT_0374 - Glycosyltransferases, probably involved in cell wall biogenesis, at 378,416 to 379,780
_0374
B158DRAFT_0375: B158DRAFT_0375 - hypothetical protein, at 380,021 to 381,292
_0375
B158DRAFT_0376: B158DRAFT_0376 - CAAX amino terminal protease family., at 381,331 to 382,020
_0376
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 379.023 kb on + strand, within B158DRAFT_0374 at 379.036 kb on - strand, within B158DRAFT_0374 at 379.050 kb on + strand, within B158DRAFT_0374 at 379.065 kb on + strand, within B158DRAFT_0374 at 379.065 kb on + strand, within B158DRAFT_0374 at 379.065 kb on + strand, within B158DRAFT_0374 at 379.065 kb on + strand, within B158DRAFT_0374 at 379.120 kb on + strand, within B158DRAFT_0374 at 379.120 kb on + strand, within B158DRAFT_0374 at 379.128 kb on - strand, within B158DRAFT_0374 at 379.130 kb on + strand, within B158DRAFT_0374 at 379.280 kb on + strand, within B158DRAFT_0374 at 379.287 kb on - strand, within B158DRAFT_0374 at 379.307 kb on - strand, within B158DRAFT_0374 at 379.326 kb on + strand, within B158DRAFT_0374 at 379.435 kb on + strand, within B158DRAFT_0374 at 379.435 kb on + strand, within B158DRAFT_0374 at 379.443 kb on - strand, within B158DRAFT_0374 at 379.455 kb on + strand, within B158DRAFT_0374 at 379.455 kb on + strand, within B158DRAFT_0374 at 379.455 kb on + strand, within B158DRAFT_0374 at 379.457 kb on + strand, within B158DRAFT_0374 at 379.462 kb on + strand, within B158DRAFT_0374 at 379.465 kb on - strand, within B158DRAFT_0374 at 379.493 kb on - strand, within B158DRAFT_0374 at 379.517 kb on - strand, within B158DRAFT_0374 at 379.517 kb on - strand, within B158DRAFT_0374 at 379.517 kb on - strand, within B158DRAFT_0374 at 379.526 kb on - strand, within B158DRAFT_0374 at 379.533 kb on - strand, within B158DRAFT_0374 at 379.545 kb on + strand, within B158DRAFT_0374 at 379.572 kb on - strand, within B158DRAFT_0374 at 379.676 kb on - strand at 379.720 kb on + strand at 379.720 kb on + strand at 379.720 kb on + strand at 379.720 kb on + strand at 379.720 kb on + strand at 379.728 kb on - strand at 379.728 kb on - strand at 379.741 kb on + strand at 379.846 kb on + strand at 379.854 kb on - strand at 379.856 kb on + strand at 379.856 kb on + strand at 379.864 kb on - strand at 379.899 kb on - strand at 379.919 kb on - strand at 380.017 kb on - strand at 380.047 kb on + strand at 380.055 kb on - strand at 380.100 kb on + strand at 380.105 kb on + strand at 380.127 kb on + strand at 380.134 kb on + strand at 380.238 kb on + strand, within B158DRAFT_0375 at 380.238 kb on + strand, within B158DRAFT_0375 at 380.238 kb on + strand, within B158DRAFT_0375 at 380.238 kb on + strand, within B158DRAFT_0375 at 380.238 kb on + strand, within B158DRAFT_0375 at 380.238 kb on + strand, within B158DRAFT_0375 at 380.238 kb on + strand, within B158DRAFT_0375 at 380.245 kb on - strand, within B158DRAFT_0375 at 380.246 kb on - strand, within B158DRAFT_0375 at 380.246 kb on - strand, within B158DRAFT_0375 at 380.246 kb on - strand, within B158DRAFT_0375 at 380.246 kb on - strand, within B158DRAFT_0375 at 380.246 kb on - strand, within B158DRAFT_0375 at 380.246 kb on - strand, within B158DRAFT_0375 at 380.246 kb on - strand, within B158DRAFT_0375 at 380.282 kb on - strand, within B158DRAFT_0375 at 380.310 kb on + strand, within B158DRAFT_0375 at 380.457 kb on - strand, within B158DRAFT_0375 at 380.603 kb on - strand, within B158DRAFT_0375 at 380.693 kb on - strand, within B158DRAFT_0375 at 380.930 kb on - strand, within B158DRAFT_0375 at 380.932 kb on + strand, within B158DRAFT_0375 at 380.940 kb on - strand, within B158DRAFT_0375 at 380.989 kb on - strand, within B158DRAFT_0375 at 381.043 kb on + strand, within B158DRAFT_0375 at 381.084 kb on + strand, within B158DRAFT_0375 at 381.247 kb on - strand at 381.333 kb on + strand at 381.387 kb on + strand at 381.432 kb on + strand, within B158DRAFT_0376 at 381.450 kb on + strand, within B158DRAFT_0376 at 381.458 kb on - strand, within B158DRAFT_0376 at 381.488 kb on - strand, within B158DRAFT_0376 at 381.495 kb on + strand, within B158DRAFT_0376 at 381.498 kb on + strand, within B158DRAFT_0376 at 381.584 kb on - strand, within B158DRAFT_0376 at 381.662 kb on - strand, within B158DRAFT_0376 at 381.738 kb on + strand, within B158DRAFT_0376 at 381.767 kb on + strand, within B158DRAFT_0376 at 381.767 kb on + strand, within B158DRAFT_0376 at 381.775 kb on - strand, within B158DRAFT_0376 at 381.775 kb on - strand, within B158DRAFT_0376 at 381.843 kb on + strand, within B158DRAFT_0376 at 381.843 kb on + strand, within B158DRAFT_0376 at 381.843 kb on - strand, within B158DRAFT_0376 at 381.852 kb on + strand, within B158DRAFT_0376 at 381.882 kb on + strand, within B158DRAFT_0376 at 381.882 kb on + strand, within B158DRAFT_0376 at 381.890 kb on - strand, within B158DRAFT_0376 at 381.890 kb on - strand, within B158DRAFT_0376 at 381.927 kb on + strand, within B158DRAFT_0376 at 381.955 kb on - strand at 381.962 kb on - strand at 381.968 kb on - strand at 381.970 kb on + strand at 381.978 kb on - strand at 381.983 kb on - strand at 381.983 kb on - strand at 382.103 kb on - strand at 382.169 kb on + strand at 382.169 kb on + strand at 382.169 kb on + strand at 382.177 kb on - strand at 382.177 kb on - strand at 382.177 kb on - strand at 382.177 kb on - strand at 382.177 kb on - strand at 382.202 kb on + strand at 382.215 kb on + strand at 382.215 kb on + strand at 382.223 kb on - strand at 382.223 kb on - strand at 382.223 kb on - strand at 382.227 kb on + strand at 382.228 kb on + strand at 382.228 kb on + strand at 382.236 kb on - strand at 382.236 kb on - strand at 382.236 kb on - strand at 382.240 kb on + strand at 382.243 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.248 kb on - strand at 382.264 kb on + strand at 382.269 kb on + strand at 382.269 kb on + strand at 382.277 kb on - strand at 382.277 kb on - strand at 382.277 kb on - strand at 382.277 kb on - strand at 382.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 379,023 + B158DRAFT_0374 0.44 -1.1 379,036 - B158DRAFT_0374 0.45 -0.6 379,050 + B158DRAFT_0374 0.46 +1.3 379,065 + B158DRAFT_0374 0.48 -0.2 379,065 + B158DRAFT_0374 0.48 -0.1 379,065 + B158DRAFT_0374 0.48 -1.6 379,065 + B158DRAFT_0374 0.48 +0.0 379,120 + B158DRAFT_0374 0.52 -1.8 379,120 + B158DRAFT_0374 0.52 -0.9 379,128 - B158DRAFT_0374 0.52 +6.2 379,130 + B158DRAFT_0374 0.52 -1.5 379,280 + B158DRAFT_0374 0.63 -0.3 379,287 - B158DRAFT_0374 0.64 -0.2 379,307 - B158DRAFT_0374 0.65 +0.2 379,326 + B158DRAFT_0374 0.67 -1.2 379,435 + B158DRAFT_0374 0.75 +1.5 379,435 + B158DRAFT_0374 0.75 -2.1 379,443 - B158DRAFT_0374 0.75 +1.3 379,455 + B158DRAFT_0374 0.76 -1.1 379,455 + B158DRAFT_0374 0.76 -0.0 379,455 + B158DRAFT_0374 0.76 +1.3 379,457 + B158DRAFT_0374 0.76 -0.1 379,462 + B158DRAFT_0374 0.77 +0.9 379,465 - B158DRAFT_0374 0.77 +0.5 379,493 - B158DRAFT_0374 0.79 -0.8 379,517 - B158DRAFT_0374 0.81 +0.3 379,517 - B158DRAFT_0374 0.81 -0.1 379,517 - B158DRAFT_0374 0.81 -1.1 379,526 - B158DRAFT_0374 0.81 +1.5 379,533 - B158DRAFT_0374 0.82 +1.0 379,545 + B158DRAFT_0374 0.83 +2.3 379,572 - B158DRAFT_0374 0.85 +0.5 379,676 - -0.2 379,720 + -0.2 379,720 + -0.0 379,720 + +1.6 379,720 + -0.1 379,720 + -0.3 379,728 - -1.4 379,728 - +0.1 379,741 + -0.8 379,846 + -0.1 379,854 - -1.6 379,856 + -1.3 379,856 + -1.2 379,864 - +1.1 379,899 - -0.4 379,919 - -0.7 380,017 - -0.3 380,047 + -0.6 380,055 - +0.8 380,100 + +1.1 380,105 + +1.1 380,127 + +1.4 380,134 + +1.3 380,238 + B158DRAFT_0375 0.17 -0.2 380,238 + B158DRAFT_0375 0.17 +3.8 380,238 + B158DRAFT_0375 0.17 +0.2 380,238 + B158DRAFT_0375 0.17 -0.4 380,238 + B158DRAFT_0375 0.17 +0.6 380,238 + B158DRAFT_0375 0.17 +1.4 380,238 + B158DRAFT_0375 0.17 +3.1 380,245 - B158DRAFT_0375 0.18 +0.7 380,246 - B158DRAFT_0375 0.18 -1.2 380,246 - B158DRAFT_0375 0.18 +1.2 380,246 - B158DRAFT_0375 0.18 +2.5 380,246 - B158DRAFT_0375 0.18 -0.3 380,246 - B158DRAFT_0375 0.18 +3.0 380,246 - B158DRAFT_0375 0.18 +1.8 380,246 - B158DRAFT_0375 0.18 +1.7 380,282 - B158DRAFT_0375 0.21 +0.9 380,310 + B158DRAFT_0375 0.23 +1.0 380,457 - B158DRAFT_0375 0.34 +1.1 380,603 - B158DRAFT_0375 0.46 +1.5 380,693 - B158DRAFT_0375 0.53 -0.5 380,930 - B158DRAFT_0375 0.71 -0.1 380,932 + B158DRAFT_0375 0.72 -1.5 380,940 - B158DRAFT_0375 0.72 +0.2 380,989 - B158DRAFT_0375 0.76 +0.7 381,043 + B158DRAFT_0375 0.80 -0.3 381,084 + B158DRAFT_0375 0.84 +0.2 381,247 - +0.1 381,333 + +2.3 381,387 + +0.8 381,432 + B158DRAFT_0376 0.15 +1.2 381,450 + B158DRAFT_0376 0.17 +3.6 381,458 - B158DRAFT_0376 0.18 +1.7 381,488 - B158DRAFT_0376 0.23 -0.3 381,495 + B158DRAFT_0376 0.24 -0.3 381,498 + B158DRAFT_0376 0.24 +0.8 381,584 - B158DRAFT_0376 0.37 +0.6 381,662 - B158DRAFT_0376 0.48 -2.3 381,738 + B158DRAFT_0376 0.59 +1.3 381,767 + B158DRAFT_0376 0.63 -2.6 381,767 + B158DRAFT_0376 0.63 +0.7 381,775 - B158DRAFT_0376 0.64 -0.8 381,775 - B158DRAFT_0376 0.64 +1.2 381,843 + B158DRAFT_0376 0.74 +1.0 381,843 + B158DRAFT_0376 0.74 -1.7 381,843 - B158DRAFT_0376 0.74 -0.9 381,852 + B158DRAFT_0376 0.76 -0.8 381,882 + B158DRAFT_0376 0.80 -1.4 381,882 + B158DRAFT_0376 0.80 +0.0 381,890 - B158DRAFT_0376 0.81 +0.2 381,890 - B158DRAFT_0376 0.81 +1.5 381,927 + B158DRAFT_0376 0.86 -1.1 381,955 - -1.5 381,962 - -1.7 381,968 - -0.3 381,970 + -2.4 381,978 - -0.0 381,983 - +5.6 381,983 - +5.9 382,103 - -0.0 382,169 + +0.1 382,169 + -1.2 382,169 + -1.3 382,177 - -0.8 382,177 - -1.4 382,177 - -0.4 382,177 - +0.9 382,177 - -0.9 382,202 + +1.1 382,215 + +0.0 382,215 + -0.4 382,223 - +3.8 382,223 - +4.5 382,223 - +4.4 382,227 + -0.8 382,228 + +0.3 382,228 + +0.1 382,236 - +4.2 382,236 - +4.7 382,236 - +4.3 382,240 + -0.1 382,243 - -1.0 382,248 - -0.4 382,248 - -1.0 382,248 - +1.0 382,248 - -0.7 382,248 - +0.1 382,248 - +1.5 382,248 - -1.1 382,248 - +0.3 382,248 - -1.5 382,264 + -0.6 382,269 + +2.0 382,269 + -1.4 382,277 - +4.9 382,277 - +5.7 382,277 - +6.3 382,277 - +6.0 382,277 - +6.0
Or see this region's nucleotide sequence