Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0323

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0322 and B158DRAFT_0323 are separated by 29 nucleotidesB158DRAFT_0323 and B158DRAFT_0324 are separated by 27 nucleotidesB158DRAFT_0324 and B158DRAFT_0325 are separated by 89 nucleotides B158DRAFT_0322: B158DRAFT_0322 - hypothetical protein, at 327,059 to 328,204 _0322 B158DRAFT_0323: B158DRAFT_0323 - Protocatechuate 3,4-dioxygenase beta subunit, at 328,234 to 328,830 _0323 B158DRAFT_0324: B158DRAFT_0324 - Cytochrome B561, at 328,858 to 329,445 _0324 B158DRAFT_0325: B158DRAFT_0325 - transcriptional regulator, LytTR family, at 329,535 to 330,401 _0325 Position (kb) 328 329Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 327.268 kb on - strand, within B158DRAFT_0322at 327.329 kb on + strand, within B158DRAFT_0322at 327.377 kb on - strand, within B158DRAFT_0322at 327.379 kb on + strand, within B158DRAFT_0322at 327.379 kb on + strand, within B158DRAFT_0322at 327.379 kb on + strand, within B158DRAFT_0322at 327.421 kb on - strand, within B158DRAFT_0322at 327.421 kb on - strand, within B158DRAFT_0322at 327.486 kb on - strand, within B158DRAFT_0322at 327.548 kb on + strand, within B158DRAFT_0322at 327.551 kb on - strand, within B158DRAFT_0322at 327.558 kb on - strand, within B158DRAFT_0322at 327.701 kb on - strand, within B158DRAFT_0322at 327.751 kb on + strand, within B158DRAFT_0322at 327.816 kb on + strand, within B158DRAFT_0322at 327.839 kb on - strand, within B158DRAFT_0322at 327.919 kb on - strand, within B158DRAFT_0322at 328.008 kb on - strand, within B158DRAFT_0322at 328.067 kb on + strand, within B158DRAFT_0322at 328.091 kb on - strandat 328.155 kb on - strandat 328.318 kb on - strand, within B158DRAFT_0323at 328.328 kb on - strand, within B158DRAFT_0323at 328.329 kb on + strand, within B158DRAFT_0323at 328.339 kb on - strand, within B158DRAFT_0323at 328.356 kb on + strand, within B158DRAFT_0323at 328.356 kb on + strand, within B158DRAFT_0323at 328.395 kb on + strand, within B158DRAFT_0323at 328.464 kb on - strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.466 kb on + strand, within B158DRAFT_0323at 328.469 kb on - strand, within B158DRAFT_0323at 328.472 kb on + strand, within B158DRAFT_0323at 328.472 kb on + strand, within B158DRAFT_0323at 328.473 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.474 kb on - strand, within B158DRAFT_0323at 328.478 kb on + strand, within B158DRAFT_0323at 328.479 kb on + strand, within B158DRAFT_0323at 328.480 kb on - strand, within B158DRAFT_0323at 328.516 kb on - strand, within B158DRAFT_0323at 328.529 kb on - strand, within B158DRAFT_0323at 328.540 kb on + strand, within B158DRAFT_0323at 328.548 kb on - strand, within B158DRAFT_0323at 328.557 kb on - strand, within B158DRAFT_0323at 328.599 kb on - strand, within B158DRAFT_0323at 328.662 kb on + strand, within B158DRAFT_0323at 328.738 kb on + strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.746 kb on - strand, within B158DRAFT_0323at 328.820 kb on + strandat 328.963 kb on + strand, within B158DRAFT_0324at 328.973 kb on - strand, within B158DRAFT_0324at 329.007 kb on + strand, within B158DRAFT_0324at 329.007 kb on + strand, within B158DRAFT_0324at 329.029 kb on - strand, within B158DRAFT_0324at 329.116 kb on + strand, within B158DRAFT_0324at 329.125 kb on + strand, within B158DRAFT_0324at 329.164 kb on + strand, within B158DRAFT_0324at 329.197 kb on + strand, within B158DRAFT_0324at 329.205 kb on - strand, within B158DRAFT_0324at 329.274 kb on - strand, within B158DRAFT_0324at 329.287 kb on - strand, within B158DRAFT_0324at 329.297 kb on - strand, within B158DRAFT_0324at 329.297 kb on - strand, within B158DRAFT_0324at 329.376 kb on + strand, within B158DRAFT_0324at 329.442 kb on - strandat 329.533 kb on + strandat 329.533 kb on - strandat 329.539 kb on + strandat 329.541 kb on - strandat 329.541 kb on - strandat 329.547 kb on - strandat 329.626 kb on - strand, within B158DRAFT_0325at 329.631 kb on + strand, within B158DRAFT_0325at 329.704 kb on + strand, within B158DRAFT_0325

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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327,268 - B158DRAFT_0322 0.18 -0.2
327,329 + B158DRAFT_0322 0.24 +0.9
327,377 - B158DRAFT_0322 0.28 +0.4
327,379 + B158DRAFT_0322 0.28 -1.0
327,379 + B158DRAFT_0322 0.28 +0.7
327,379 + B158DRAFT_0322 0.28 -0.4
327,421 - B158DRAFT_0322 0.32 -1.1
327,421 - B158DRAFT_0322 0.32 -0.9
327,486 - B158DRAFT_0322 0.37 -1.2
327,548 + B158DRAFT_0322 0.43 -1.6
327,551 - B158DRAFT_0322 0.43 -2.2
327,558 - B158DRAFT_0322 0.44 +0.1
327,701 - B158DRAFT_0322 0.56 -0.8
327,751 + B158DRAFT_0322 0.60 +1.3
327,816 + B158DRAFT_0322 0.66 -1.7
327,839 - B158DRAFT_0322 0.68 +0.6
327,919 - B158DRAFT_0322 0.75 -0.4
328,008 - B158DRAFT_0322 0.83 -1.3
328,067 + B158DRAFT_0322 0.88 -0.9
328,091 - -0.7
328,155 - -1.1
328,318 - B158DRAFT_0323 0.14 -0.1
328,328 - B158DRAFT_0323 0.16 -0.3
328,329 + B158DRAFT_0323 0.16 -1.1
328,339 - B158DRAFT_0323 0.18 +0.4
328,356 + B158DRAFT_0323 0.20 +0.1
328,356 + B158DRAFT_0323 0.20 -0.9
328,395 + B158DRAFT_0323 0.27 +0.6
328,464 - B158DRAFT_0323 0.39 -0.0
328,466 + B158DRAFT_0323 0.39 -1.0
328,466 + B158DRAFT_0323 0.39 -1.3
328,466 + B158DRAFT_0323 0.39 -0.4
328,466 + B158DRAFT_0323 0.39 -0.7
328,466 + B158DRAFT_0323 0.39 +4.3
328,466 + B158DRAFT_0323 0.39 -1.0
328,466 + B158DRAFT_0323 0.39 -0.0
328,466 + B158DRAFT_0323 0.39 -0.0
328,469 - B158DRAFT_0323 0.39 -0.8
328,472 + B158DRAFT_0323 0.40 -1.8
328,472 + B158DRAFT_0323 0.40 -1.1
328,473 - B158DRAFT_0323 0.40 +1.4
328,474 - B158DRAFT_0323 0.40 +1.4
328,474 - B158DRAFT_0323 0.40 -1.5
328,474 - B158DRAFT_0323 0.40 -0.5
328,474 - B158DRAFT_0323 0.40 +2.1
328,474 - B158DRAFT_0323 0.40 +0.2
328,474 - B158DRAFT_0323 0.40 -1.1
328,474 - B158DRAFT_0323 0.40 +0.3
328,478 + B158DRAFT_0323 0.41 -0.9
328,479 + B158DRAFT_0323 0.41 -0.2
328,480 - B158DRAFT_0323 0.41 +1.1
328,516 - B158DRAFT_0323 0.47 -0.7
328,529 - B158DRAFT_0323 0.49 +0.1
328,540 + B158DRAFT_0323 0.51 -1.2
328,548 - B158DRAFT_0323 0.53 -1.3
328,557 - B158DRAFT_0323 0.54 +0.1
328,599 - B158DRAFT_0323 0.61 -1.0
328,662 + B158DRAFT_0323 0.72 -0.8
328,738 + B158DRAFT_0323 0.84 +0.8
328,746 - B158DRAFT_0323 0.86 +0.1
328,746 - B158DRAFT_0323 0.86 +1.2
328,746 - B158DRAFT_0323 0.86 -0.6
328,746 - B158DRAFT_0323 0.86 -1.4
328,820 + -1.1
328,963 + B158DRAFT_0324 0.18 +0.3
328,973 - B158DRAFT_0324 0.20 -1.6
329,007 + B158DRAFT_0324 0.25 -0.6
329,007 + B158DRAFT_0324 0.25 -0.9
329,029 - B158DRAFT_0324 0.29 -0.2
329,116 + B158DRAFT_0324 0.44 +0.2
329,125 + B158DRAFT_0324 0.45 +1.1
329,164 + B158DRAFT_0324 0.52 -0.4
329,197 + B158DRAFT_0324 0.58 +0.4
329,205 - B158DRAFT_0324 0.59 -1.4
329,274 - B158DRAFT_0324 0.71 +0.2
329,287 - B158DRAFT_0324 0.73 +0.6
329,297 - B158DRAFT_0324 0.75 -0.3
329,297 - B158DRAFT_0324 0.75 +1.0
329,376 + B158DRAFT_0324 0.88 -1.1
329,442 - -2.8
329,533 + -1.1
329,533 - -0.9
329,539 + -1.2
329,541 - -1.8
329,541 - -0.9
329,547 - -0.0
329,626 - B158DRAFT_0325 0.10 -1.4
329,631 + B158DRAFT_0325 0.11 -0.0
329,704 + B158DRAFT_0325 0.19 +0.5

Or see this region's nucleotide sequence