Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2536 and B158DRAFT_2537 are separated by 146 nucleotides B158DRAFT_2537 and B158DRAFT_2538 are separated by 16 nucleotides B158DRAFT_2538 and B158DRAFT_2539 are separated by 16 nucleotides B158DRAFT_2539 and B158DRAFT_2540 are separated by 60 nucleotides
B158DRAFT_2536: B158DRAFT_2536 - Uncharacterized protein involved in response to NO, at 727,446 to 728,645
_2536
B158DRAFT_2537: B158DRAFT_2537 - hypothetical protein, at 728,792 to 729,247
_2537
B158DRAFT_2538: B158DRAFT_2538 - hypothetical protein, at 729,264 to 730,010
_2538
B158DRAFT_2539: B158DRAFT_2539 - hypothetical protein, at 730,027 to 730,596
_2539
B158DRAFT_2540: B158DRAFT_2540 - hypothetical protein, at 730,657 to 731,133
_2540
Position (kb) 729
730
731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 728.273 kb on + strand, within B158DRAFT_2536 at 728.281 kb on - strand, within B158DRAFT_2536 at 728.283 kb on + strand, within B158DRAFT_2536 at 728.283 kb on + strand, within B158DRAFT_2536 at 728.283 kb on + strand, within B158DRAFT_2536 at 728.291 kb on - strand, within B158DRAFT_2536 at 728.298 kb on - strand, within B158DRAFT_2536 at 728.321 kb on - strand, within B158DRAFT_2536 at 728.353 kb on - strand, within B158DRAFT_2536 at 728.384 kb on - strand, within B158DRAFT_2536 at 728.403 kb on + strand, within B158DRAFT_2536 at 728.411 kb on - strand, within B158DRAFT_2536 at 728.413 kb on + strand, within B158DRAFT_2536 at 728.420 kb on + strand, within B158DRAFT_2536 at 728.439 kb on + strand, within B158DRAFT_2536 at 728.444 kb on + strand, within B158DRAFT_2536 at 728.483 kb on - strand, within B158DRAFT_2536 at 728.483 kb on - strand, within B158DRAFT_2536 at 728.483 kb on - strand, within B158DRAFT_2536 at 728.483 kb on - strand, within B158DRAFT_2536 at 728.518 kb on + strand, within B158DRAFT_2536 at 728.526 kb on - strand at 728.538 kb on - strand at 728.561 kb on + strand at 728.569 kb on - strand at 728.829 kb on - strand at 728.874 kb on - strand, within B158DRAFT_2537 at 728.878 kb on - strand, within B158DRAFT_2537 at 728.886 kb on + strand, within B158DRAFT_2537 at 728.971 kb on + strand, within B158DRAFT_2537 at 729.036 kb on + strand, within B158DRAFT_2537 at 729.036 kb on + strand, within B158DRAFT_2537 at 729.044 kb on - strand, within B158DRAFT_2537 at 729.044 kb on - strand, within B158DRAFT_2537 at 729.080 kb on + strand, within B158DRAFT_2537 at 729.166 kb on + strand, within B158DRAFT_2537 at 729.166 kb on + strand, within B158DRAFT_2537 at 729.183 kb on + strand, within B158DRAFT_2537 at 729.183 kb on + strand, within B158DRAFT_2537 at 729.191 kb on + strand, within B158DRAFT_2537 at 729.191 kb on - strand, within B158DRAFT_2537 at 729.191 kb on - strand, within B158DRAFT_2537 at 729.191 kb on - strand, within B158DRAFT_2537 at 729.191 kb on - strand, within B158DRAFT_2537 at 729.191 kb on - strand, within B158DRAFT_2537 at 729.199 kb on - strand, within B158DRAFT_2537 at 729.209 kb on - strand at 729.216 kb on + strand at 729.219 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.224 kb on - strand at 729.226 kb on + strand at 729.234 kb on - strand at 729.234 kb on - strand at 729.293 kb on - strand at 729.299 kb on - strand at 729.299 kb on - strand at 729.299 kb on - strand at 729.324 kb on - strand at 729.354 kb on + strand, within B158DRAFT_2538 at 729.364 kb on + strand, within B158DRAFT_2538 at 729.432 kb on + strand, within B158DRAFT_2538 at 729.432 kb on + strand, within B158DRAFT_2538 at 729.440 kb on - strand, within B158DRAFT_2538 at 729.453 kb on - strand, within B158DRAFT_2538 at 729.487 kb on - strand, within B158DRAFT_2538 at 729.487 kb on - strand, within B158DRAFT_2538 at 729.489 kb on + strand, within B158DRAFT_2538 at 729.497 kb on - strand, within B158DRAFT_2538 at 729.497 kb on - strand, within B158DRAFT_2538 at 729.497 kb on - strand, within B158DRAFT_2538 at 729.497 kb on - strand, within B158DRAFT_2538 at 729.497 kb on - strand, within B158DRAFT_2538 at 729.524 kb on + strand, within B158DRAFT_2538 at 729.532 kb on - strand, within B158DRAFT_2538 at 729.570 kb on + strand, within B158DRAFT_2538 at 729.578 kb on - strand, within B158DRAFT_2538 at 729.632 kb on - strand, within B158DRAFT_2538 at 729.652 kb on + strand, within B158DRAFT_2538 at 729.652 kb on + strand, within B158DRAFT_2538 at 729.652 kb on + strand, within B158DRAFT_2538 at 729.652 kb on + strand, within B158DRAFT_2538 at 729.652 kb on + strand, within B158DRAFT_2538 at 729.660 kb on - strand, within B158DRAFT_2538 at 729.677 kb on - strand, within B158DRAFT_2538 at 729.713 kb on + strand, within B158DRAFT_2538 at 729.735 kb on - strand, within B158DRAFT_2538 at 729.735 kb on - strand, within B158DRAFT_2538 at 729.785 kb on - strand, within B158DRAFT_2538 at 729.804 kb on + strand, within B158DRAFT_2538 at 729.813 kb on + strand, within B158DRAFT_2538 at 729.822 kb on - strand, within B158DRAFT_2538 at 729.846 kb on + strand, within B158DRAFT_2538 at 729.856 kb on + strand, within B158DRAFT_2538 at 729.856 kb on + strand, within B158DRAFT_2538 at 729.856 kb on + strand, within B158DRAFT_2538 at 729.856 kb on + strand, within B158DRAFT_2538 at 729.856 kb on + strand, within B158DRAFT_2538 at 729.864 kb on - strand, within B158DRAFT_2538 at 729.864 kb on - strand, within B158DRAFT_2538 at 729.864 kb on - strand, within B158DRAFT_2538 at 729.864 kb on - strand, within B158DRAFT_2538 at 729.864 kb on - strand, within B158DRAFT_2538 at 729.928 kb on + strand, within B158DRAFT_2538 at 729.928 kb on + strand, within B158DRAFT_2538 at 729.936 kb on - strand at 730.094 kb on + strand, within B158DRAFT_2539 at 730.094 kb on + strand, within B158DRAFT_2539 at 730.094 kb on + strand, within B158DRAFT_2539 at 730.094 kb on + strand, within B158DRAFT_2539 at 730.094 kb on + strand, within B158DRAFT_2539 at 730.094 kb on + strand, within B158DRAFT_2539 at 730.095 kb on + strand, within B158DRAFT_2539 at 730.102 kb on - strand, within B158DRAFT_2539 at 730.104 kb on + strand, within B158DRAFT_2539 at 730.104 kb on + strand, within B158DRAFT_2539 at 730.308 kb on + strand, within B158DRAFT_2539 at 730.311 kb on - strand, within B158DRAFT_2539 at 730.311 kb on - strand, within B158DRAFT_2539 at 730.343 kb on + strand, within B158DRAFT_2539 at 730.357 kb on + strand, within B158DRAFT_2539 at 730.357 kb on + strand, within B158DRAFT_2539 at 730.357 kb on + strand, within B158DRAFT_2539 at 730.365 kb on - strand, within B158DRAFT_2539 at 730.365 kb on - strand, within B158DRAFT_2539 at 730.367 kb on + strand, within B158DRAFT_2539 at 730.377 kb on - strand, within B158DRAFT_2539 at 730.377 kb on - strand, within B158DRAFT_2539 at 730.398 kb on + strand, within B158DRAFT_2539 at 730.442 kb on - strand, within B158DRAFT_2539 at 730.442 kb on - strand, within B158DRAFT_2539 at 730.515 kb on + strand, within B158DRAFT_2539 at 730.541 kb on + strand at 730.555 kb on + strand at 730.719 kb on + strand, within B158DRAFT_2540 at 730.719 kb on + strand, within B158DRAFT_2540 at 730.727 kb on - strand, within B158DRAFT_2540 at 730.898 kb on + strand, within B158DRAFT_2540 at 730.914 kb on - strand, within B158DRAFT_2540 at 730.939 kb on + strand, within B158DRAFT_2540
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 728,273 + B158DRAFT_2536 0.69 +0.4 728,281 - B158DRAFT_2536 0.70 +2.3 728,283 + B158DRAFT_2536 0.70 +1.1 728,283 + B158DRAFT_2536 0.70 -1.7 728,283 + B158DRAFT_2536 0.70 +2.0 728,291 - B158DRAFT_2536 0.70 -0.1 728,298 - B158DRAFT_2536 0.71 -0.7 728,321 - B158DRAFT_2536 0.73 +1.3 728,353 - B158DRAFT_2536 0.76 -1.2 728,384 - B158DRAFT_2536 0.78 -0.0 728,403 + B158DRAFT_2536 0.80 -0.0 728,411 - B158DRAFT_2536 0.80 -0.4 728,413 + B158DRAFT_2536 0.81 +0.3 728,420 + B158DRAFT_2536 0.81 -1.0 728,439 + B158DRAFT_2536 0.83 -2.6 728,444 + B158DRAFT_2536 0.83 +1.2 728,483 - B158DRAFT_2536 0.86 +0.4 728,483 - B158DRAFT_2536 0.86 +0.1 728,483 - B158DRAFT_2536 0.86 +0.5 728,483 - B158DRAFT_2536 0.86 -1.0 728,518 + B158DRAFT_2536 0.89 -0.8 728,526 - -0.7 728,538 - +1.3 728,561 + +0.0 728,569 - -0.7 728,829 - +0.6 728,874 - B158DRAFT_2537 0.18 -0.2 728,878 - B158DRAFT_2537 0.19 +0.2 728,886 + B158DRAFT_2537 0.21 -0.2 728,971 + B158DRAFT_2537 0.39 +1.6 729,036 + B158DRAFT_2537 0.54 -0.3 729,036 + B158DRAFT_2537 0.54 -1.3 729,044 - B158DRAFT_2537 0.55 +0.0 729,044 - B158DRAFT_2537 0.55 -0.0 729,080 + B158DRAFT_2537 0.63 -0.1 729,166 + B158DRAFT_2537 0.82 -0.1 729,166 + B158DRAFT_2537 0.82 +0.9 729,183 + B158DRAFT_2537 0.86 -0.7 729,183 + B158DRAFT_2537 0.86 -1.9 729,191 + B158DRAFT_2537 0.88 +0.4 729,191 - B158DRAFT_2537 0.88 +0.3 729,191 - B158DRAFT_2537 0.88 +0.2 729,191 - B158DRAFT_2537 0.88 +0.6 729,191 - B158DRAFT_2537 0.88 -0.4 729,191 - B158DRAFT_2537 0.88 -0.3 729,199 - B158DRAFT_2537 0.89 -2.1 729,209 - -0.8 729,216 + -0.2 729,219 - -0.7 729,224 - -2.5 729,224 - -0.1 729,224 - +0.2 729,224 - -0.7 729,224 - -0.7 729,224 - -1.3 729,226 + -0.7 729,234 - -1.7 729,234 - -0.0 729,293 - +0.9 729,299 - -0.5 729,299 - -0.4 729,299 - -1.2 729,324 - -1.0 729,354 + B158DRAFT_2538 0.12 -0.3 729,364 + B158DRAFT_2538 0.13 -1.3 729,432 + B158DRAFT_2538 0.22 +1.0 729,432 + B158DRAFT_2538 0.22 -1.1 729,440 - B158DRAFT_2538 0.24 +1.6 729,453 - B158DRAFT_2538 0.25 -0.4 729,487 - B158DRAFT_2538 0.30 -0.5 729,487 - B158DRAFT_2538 0.30 -0.3 729,489 + B158DRAFT_2538 0.30 +0.2 729,497 - B158DRAFT_2538 0.31 -0.5 729,497 - B158DRAFT_2538 0.31 -0.6 729,497 - B158DRAFT_2538 0.31 +0.0 729,497 - B158DRAFT_2538 0.31 +0.1 729,497 - B158DRAFT_2538 0.31 +0.9 729,524 + B158DRAFT_2538 0.35 +0.1 729,532 - B158DRAFT_2538 0.36 -0.1 729,570 + B158DRAFT_2538 0.41 -0.9 729,578 - B158DRAFT_2538 0.42 -0.7 729,632 - B158DRAFT_2538 0.49 -1.6 729,652 + B158DRAFT_2538 0.52 -1.1 729,652 + B158DRAFT_2538 0.52 -0.8 729,652 + B158DRAFT_2538 0.52 -0.2 729,652 + B158DRAFT_2538 0.52 +1.3 729,652 + B158DRAFT_2538 0.52 +4.1 729,660 - B158DRAFT_2538 0.53 +3.7 729,677 - B158DRAFT_2538 0.55 -0.3 729,713 + B158DRAFT_2538 0.60 -1.8 729,735 - B158DRAFT_2538 0.63 -0.1 729,735 - B158DRAFT_2538 0.63 -1.4 729,785 - B158DRAFT_2538 0.70 -1.4 729,804 + B158DRAFT_2538 0.72 -0.7 729,813 + B158DRAFT_2538 0.73 -1.0 729,822 - B158DRAFT_2538 0.75 -1.0 729,846 + B158DRAFT_2538 0.78 +0.1 729,856 + B158DRAFT_2538 0.79 -1.1 729,856 + B158DRAFT_2538 0.79 +0.3 729,856 + B158DRAFT_2538 0.79 +2.3 729,856 + B158DRAFT_2538 0.79 -0.3 729,856 + B158DRAFT_2538 0.79 -0.0 729,864 - B158DRAFT_2538 0.80 -0.3 729,864 - B158DRAFT_2538 0.80 -0.5 729,864 - B158DRAFT_2538 0.80 -0.2 729,864 - B158DRAFT_2538 0.80 -3.1 729,864 - B158DRAFT_2538 0.80 +1.6 729,928 + B158DRAFT_2538 0.89 -1.0 729,928 + B158DRAFT_2538 0.89 -2.0 729,936 - -1.4 730,094 + B158DRAFT_2539 0.12 -0.7 730,094 + B158DRAFT_2539 0.12 -1.2 730,094 + B158DRAFT_2539 0.12 +1.2 730,094 + B158DRAFT_2539 0.12 -0.7 730,094 + B158DRAFT_2539 0.12 -2.0 730,094 + B158DRAFT_2539 0.12 +0.8 730,095 + B158DRAFT_2539 0.12 -1.3 730,102 - B158DRAFT_2539 0.13 +1.6 730,104 + B158DRAFT_2539 0.14 +1.5 730,104 + B158DRAFT_2539 0.14 +0.6 730,308 + B158DRAFT_2539 0.49 -1.4 730,311 - B158DRAFT_2539 0.50 -1.6 730,311 - B158DRAFT_2539 0.50 -0.9 730,343 + B158DRAFT_2539 0.55 -0.9 730,357 + B158DRAFT_2539 0.58 -2.1 730,357 + B158DRAFT_2539 0.58 -1.2 730,357 + B158DRAFT_2539 0.58 +0.1 730,365 - B158DRAFT_2539 0.59 -1.1 730,365 - B158DRAFT_2539 0.59 -0.5 730,367 + B158DRAFT_2539 0.60 +2.0 730,377 - B158DRAFT_2539 0.61 -1.1 730,377 - B158DRAFT_2539 0.61 -0.3 730,398 + B158DRAFT_2539 0.65 -0.4 730,442 - B158DRAFT_2539 0.73 -2.2 730,442 - B158DRAFT_2539 0.73 -1.3 730,515 + B158DRAFT_2539 0.86 +1.2 730,541 + -0.7 730,555 + +1.7 730,719 + B158DRAFT_2540 0.13 -0.6 730,719 + B158DRAFT_2540 0.13 -0.6 730,727 - B158DRAFT_2540 0.15 -1.5 730,898 + B158DRAFT_2540 0.51 +1.0 730,914 - B158DRAFT_2540 0.54 -0.5 730,939 + B158DRAFT_2540 0.59 -1.3
Or see this region's nucleotide sequence