Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2015 and B158DRAFT_2016 are separated by 267 nucleotides B158DRAFT_2016 and B158DRAFT_2017 are separated by 56 nucleotides B158DRAFT_2017 and B158DRAFT_2018 are separated by 181 nucleotides
B158DRAFT_2015: B158DRAFT_2015 - hypothetical protein, at 144,763 to 145,476
_2015
B158DRAFT_2016: B158DRAFT_2016 - Zn-dependent protease with chaperone function, at 145,744 to 146,640
_2016
B158DRAFT_2017: B158DRAFT_2017 - Protein of unknown function (DUF2799)., at 146,697 to 147,239
_2017
B158DRAFT_2018: B158DRAFT_2018 - tRNA dihydrouridine synthase A, at 147,421 to 148,380
_2018
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 144.820 kb on + strand at 144.831 kb on + strand at 144.831 kb on + strand at 144.839 kb on - strand, within B158DRAFT_2015 at 144.839 kb on - strand, within B158DRAFT_2015 at 144.841 kb on + strand, within B158DRAFT_2015 at 144.889 kb on + strand, within B158DRAFT_2015 at 144.900 kb on + strand, within B158DRAFT_2015 at 144.902 kb on - strand, within B158DRAFT_2015 at 144.927 kb on - strand, within B158DRAFT_2015 at 144.927 kb on - strand, within B158DRAFT_2015 at 144.927 kb on - strand, within B158DRAFT_2015 at 144.950 kb on + strand, within B158DRAFT_2015 at 144.956 kb on - strand, within B158DRAFT_2015 at 144.958 kb on - strand, within B158DRAFT_2015 at 144.966 kb on + strand, within B158DRAFT_2015 at 145.022 kb on + strand, within B158DRAFT_2015 at 145.022 kb on + strand, within B158DRAFT_2015 at 145.022 kb on + strand, within B158DRAFT_2015 at 145.030 kb on - strand, within B158DRAFT_2015 at 145.030 kb on - strand, within B158DRAFT_2015 at 145.030 kb on - strand, within B158DRAFT_2015 at 145.030 kb on - strand, within B158DRAFT_2015 at 145.030 kb on - strand, within B158DRAFT_2015 at 145.032 kb on + strand, within B158DRAFT_2015 at 145.040 kb on - strand, within B158DRAFT_2015 at 145.040 kb on - strand, within B158DRAFT_2015 at 145.040 kb on - strand, within B158DRAFT_2015 at 145.040 kb on - strand, within B158DRAFT_2015 at 145.040 kb on - strand, within B158DRAFT_2015 at 145.047 kb on - strand, within B158DRAFT_2015 at 145.064 kb on + strand, within B158DRAFT_2015 at 145.176 kb on - strand, within B158DRAFT_2015 at 145.179 kb on - strand, within B158DRAFT_2015 at 145.190 kb on + strand, within B158DRAFT_2015 at 145.190 kb on + strand, within B158DRAFT_2015 at 145.218 kb on + strand, within B158DRAFT_2015 at 145.250 kb on - strand, within B158DRAFT_2015 at 145.260 kb on + strand, within B158DRAFT_2015 at 145.284 kb on + strand, within B158DRAFT_2015 at 145.292 kb on - strand, within B158DRAFT_2015 at 145.298 kb on - strand, within B158DRAFT_2015 at 145.326 kb on - strand, within B158DRAFT_2015 at 145.337 kb on + strand, within B158DRAFT_2015 at 145.351 kb on + strand, within B158DRAFT_2015 at 145.395 kb on + strand, within B158DRAFT_2015 at 145.402 kb on + strand, within B158DRAFT_2015 at 145.410 kb on - strand at 145.412 kb on + strand at 145.412 kb on + strand at 145.412 kb on + strand at 145.412 kb on + strand at 145.420 kb on - strand at 145.420 kb on - strand at 145.420 kb on - strand at 145.473 kb on - strand at 145.473 kb on - strand at 145.473 kb on - strand at 145.480 kb on + strand at 145.537 kb on + strand at 145.537 kb on + strand at 145.537 kb on + strand at 145.537 kb on + strand at 145.537 kb on + strand at 145.538 kb on + strand at 145.538 kb on + strand at 145.616 kb on + strand at 145.616 kb on + strand at 145.624 kb on - strand at 145.624 kb on - strand at 145.624 kb on - strand at 145.624 kb on - strand at 145.640 kb on - strand at 145.799 kb on + strand at 145.804 kb on + strand at 145.806 kb on + strand at 145.812 kb on - strand at 145.812 kb on - strand at 145.813 kb on - strand at 145.845 kb on - strand, within B158DRAFT_2016 at 145.847 kb on + strand, within B158DRAFT_2016 at 145.853 kb on + strand, within B158DRAFT_2016 at 145.868 kb on - strand, within B158DRAFT_2016 at 145.915 kb on - strand, within B158DRAFT_2016 at 145.990 kb on + strand, within B158DRAFT_2016 at 146.001 kb on + strand, within B158DRAFT_2016 at 146.001 kb on + strand, within B158DRAFT_2016 at 146.009 kb on - strand, within B158DRAFT_2016 at 146.009 kb on - strand, within B158DRAFT_2016 at 146.038 kb on - strand, within B158DRAFT_2016 at 146.071 kb on + strand, within B158DRAFT_2016 at 146.134 kb on + strand, within B158DRAFT_2016 at 146.135 kb on + strand, within B158DRAFT_2016 at 146.143 kb on - strand, within B158DRAFT_2016 at 146.143 kb on - strand, within B158DRAFT_2016 at 146.143 kb on - strand, within B158DRAFT_2016 at 146.239 kb on + strand, within B158DRAFT_2016 at 146.294 kb on + strand, within B158DRAFT_2016 at 146.294 kb on + strand, within B158DRAFT_2016 at 146.301 kb on + strand, within B158DRAFT_2016 at 146.302 kb on - strand, within B158DRAFT_2016 at 146.389 kb on - strand, within B158DRAFT_2016 at 146.423 kb on - strand, within B158DRAFT_2016 at 146.435 kb on + strand, within B158DRAFT_2016 at 146.435 kb on + strand, within B158DRAFT_2016 at 146.443 kb on - strand, within B158DRAFT_2016 at 146.445 kb on + strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.453 kb on - strand, within B158DRAFT_2016 at 146.523 kb on - strand, within B158DRAFT_2016 at 146.582 kb on - strand at 146.692 kb on - strand at 146.777 kb on + strand, within B158DRAFT_2017 at 146.777 kb on + strand, within B158DRAFT_2017 at 146.777 kb on + strand, within B158DRAFT_2017 at 146.777 kb on + strand, within B158DRAFT_2017 at 146.777 kb on + strand, within B158DRAFT_2017 at 146.785 kb on - strand, within B158DRAFT_2017 at 146.785 kb on - strand, within B158DRAFT_2017 at 146.785 kb on - strand, within B158DRAFT_2017 at 146.851 kb on + strand, within B158DRAFT_2017 at 146.874 kb on - strand, within B158DRAFT_2017 at 146.881 kb on + strand, within B158DRAFT_2017 at 146.941 kb on + strand, within B158DRAFT_2017 at 146.946 kb on + strand, within B158DRAFT_2017 at 146.985 kb on + strand, within B158DRAFT_2017 at 146.988 kb on + strand, within B158DRAFT_2017 at 146.988 kb on + strand, within B158DRAFT_2017 at 146.988 kb on + strand, within B158DRAFT_2017 at 146.988 kb on + strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.996 kb on - strand, within B158DRAFT_2017 at 146.998 kb on + strand, within B158DRAFT_2017 at 147.006 kb on - strand, within B158DRAFT_2017 at 147.008 kb on - strand, within B158DRAFT_2017 at 147.095 kb on - strand, within B158DRAFT_2017 at 147.224 kb on + strand at 147.232 kb on - strand at 147.233 kb on - strand at 147.248 kb on - strand at 147.285 kb on - strand at 147.340 kb on - strand at 147.340 kb on - strand at 147.391 kb on + strand at 147.391 kb on + strand at 147.392 kb on - strand at 147.399 kb on - strand at 147.399 kb on - strand at 147.399 kb on - strand at 147.424 kb on - strand at 147.424 kb on - strand at 147.426 kb on + strand at 147.426 kb on + strand at 147.431 kb on + strand at 147.434 kb on - strand at 147.434 kb on - strand at 147.434 kb on - strand at 147.434 kb on - strand at 147.434 kb on - strand at 147.434 kb on - strand at 147.440 kb on + strand at 147.475 kb on - strand at 147.475 kb on - strand at 147.482 kb on - strand at 147.483 kb on + strand at 147.483 kb on + strand at 147.483 kb on + strand at 147.483 kb on + strand at 147.483 kb on + strand at 147.483 kb on + strand at 147.491 kb on - strand at 147.491 kb on - strand at 147.491 kb on - strand at 147.491 kb on - strand at 147.491 kb on - strand at 147.522 kb on + strand, within B158DRAFT_2018 at 147.574 kb on + strand, within B158DRAFT_2018 at 147.574 kb on + strand, within B158DRAFT_2018 at 147.624 kb on - strand, within B158DRAFT_2018
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 144,820 + -0.9 144,831 + -0.0 144,831 + -0.6 144,839 - B158DRAFT_2015 0.11 -0.8 144,839 - B158DRAFT_2015 0.11 -1.2 144,841 + B158DRAFT_2015 0.11 -1.2 144,889 + B158DRAFT_2015 0.18 -1.5 144,900 + B158DRAFT_2015 0.19 -1.0 144,902 - B158DRAFT_2015 0.19 +0.7 144,927 - B158DRAFT_2015 0.23 +0.1 144,927 - B158DRAFT_2015 0.23 +0.4 144,927 - B158DRAFT_2015 0.23 -0.6 144,950 + B158DRAFT_2015 0.26 -1.5 144,956 - B158DRAFT_2015 0.27 -1.8 144,958 - B158DRAFT_2015 0.27 +2.5 144,966 + B158DRAFT_2015 0.28 +0.5 145,022 + B158DRAFT_2015 0.36 +0.4 145,022 + B158DRAFT_2015 0.36 -0.5 145,022 + B158DRAFT_2015 0.36 -0.4 145,030 - B158DRAFT_2015 0.37 -2.7 145,030 - B158DRAFT_2015 0.37 -0.8 145,030 - B158DRAFT_2015 0.37 -0.4 145,030 - B158DRAFT_2015 0.37 -0.5 145,030 - B158DRAFT_2015 0.37 -1.0 145,032 + B158DRAFT_2015 0.38 +1.3 145,040 - B158DRAFT_2015 0.39 -0.5 145,040 - B158DRAFT_2015 0.39 +0.3 145,040 - B158DRAFT_2015 0.39 -0.3 145,040 - B158DRAFT_2015 0.39 +0.3 145,040 - B158DRAFT_2015 0.39 -1.4 145,047 - B158DRAFT_2015 0.40 +1.1 145,064 + B158DRAFT_2015 0.42 +1.8 145,176 - B158DRAFT_2015 0.58 -0.7 145,179 - B158DRAFT_2015 0.58 -0.8 145,190 + B158DRAFT_2015 0.60 -0.8 145,190 + B158DRAFT_2015 0.60 -1.0 145,218 + B158DRAFT_2015 0.64 +0.1 145,250 - B158DRAFT_2015 0.68 -0.9 145,260 + B158DRAFT_2015 0.70 -0.1 145,284 + B158DRAFT_2015 0.73 +1.2 145,292 - B158DRAFT_2015 0.74 -1.6 145,298 - B158DRAFT_2015 0.75 +0.7 145,326 - B158DRAFT_2015 0.79 -0.9 145,337 + B158DRAFT_2015 0.80 -1.4 145,351 + B158DRAFT_2015 0.82 -1.8 145,395 + B158DRAFT_2015 0.89 -3.0 145,402 + B158DRAFT_2015 0.89 -0.3 145,410 - -2.8 145,412 + -0.7 145,412 + -1.0 145,412 + +2.0 145,412 + -1.9 145,420 - -1.2 145,420 - -1.3 145,420 - -1.1 145,473 - -2.3 145,473 - -0.7 145,473 - -0.1 145,480 + -0.2 145,537 + -1.9 145,537 + -1.0 145,537 + -2.0 145,537 + +0.1 145,537 + +0.9 145,538 + -1.4 145,538 + -0.9 145,616 + -0.4 145,616 + -0.8 145,624 - +1.4 145,624 - -1.4 145,624 - -0.8 145,624 - -0.1 145,640 - -2.5 145,799 + +0.2 145,804 + -2.2 145,806 + -1.8 145,812 - -1.8 145,812 - -1.2 145,813 - -1.9 145,845 - B158DRAFT_2016 0.11 -2.3 145,847 + B158DRAFT_2016 0.11 -2.2 145,853 + B158DRAFT_2016 0.12 -0.9 145,868 - B158DRAFT_2016 0.14 -0.8 145,915 - B158DRAFT_2016 0.19 +0.1 145,990 + B158DRAFT_2016 0.27 +0.3 146,001 + B158DRAFT_2016 0.29 -0.8 146,001 + B158DRAFT_2016 0.29 -1.7 146,009 - B158DRAFT_2016 0.30 -0.5 146,009 - B158DRAFT_2016 0.30 -1.1 146,038 - B158DRAFT_2016 0.33 +0.1 146,071 + B158DRAFT_2016 0.36 -0.3 146,134 + B158DRAFT_2016 0.43 -1.6 146,135 + B158DRAFT_2016 0.44 +0.5 146,143 - B158DRAFT_2016 0.44 +0.7 146,143 - B158DRAFT_2016 0.44 -3.0 146,143 - B158DRAFT_2016 0.44 -0.1 146,239 + B158DRAFT_2016 0.55 -2.2 146,294 + B158DRAFT_2016 0.61 -1.4 146,294 + B158DRAFT_2016 0.61 -2.1 146,301 + B158DRAFT_2016 0.62 -1.3 146,302 - B158DRAFT_2016 0.62 -0.4 146,389 - B158DRAFT_2016 0.72 +1.5 146,423 - B158DRAFT_2016 0.76 -1.6 146,435 + B158DRAFT_2016 0.77 -0.9 146,435 + B158DRAFT_2016 0.77 -1.3 146,443 - B158DRAFT_2016 0.78 -1.7 146,445 + B158DRAFT_2016 0.78 +1.5 146,453 - B158DRAFT_2016 0.79 -0.5 146,453 - B158DRAFT_2016 0.79 -1.2 146,453 - B158DRAFT_2016 0.79 -0.8 146,453 - B158DRAFT_2016 0.79 +0.5 146,453 - B158DRAFT_2016 0.79 +0.3 146,453 - B158DRAFT_2016 0.79 -2.2 146,453 - B158DRAFT_2016 0.79 -0.8 146,453 - B158DRAFT_2016 0.79 -1.9 146,453 - B158DRAFT_2016 0.79 -2.7 146,523 - B158DRAFT_2016 0.87 -0.5 146,582 - -2.0 146,692 - -0.5 146,777 + B158DRAFT_2017 0.15 +0.7 146,777 + B158DRAFT_2017 0.15 +0.1 146,777 + B158DRAFT_2017 0.15 +0.1 146,777 + B158DRAFT_2017 0.15 -0.7 146,777 + B158DRAFT_2017 0.15 -1.3 146,785 - B158DRAFT_2017 0.16 -1.1 146,785 - B158DRAFT_2017 0.16 -0.9 146,785 - B158DRAFT_2017 0.16 +0.7 146,851 + B158DRAFT_2017 0.28 +0.1 146,874 - B158DRAFT_2017 0.33 -2.1 146,881 + B158DRAFT_2017 0.34 -2.5 146,941 + B158DRAFT_2017 0.45 -2.1 146,946 + B158DRAFT_2017 0.46 +4.4 146,985 + B158DRAFT_2017 0.53 -0.8 146,988 + B158DRAFT_2017 0.54 -0.3 146,988 + B158DRAFT_2017 0.54 -0.5 146,988 + B158DRAFT_2017 0.54 -1.2 146,988 + B158DRAFT_2017 0.54 -1.2 146,996 - B158DRAFT_2017 0.55 -2.6 146,996 - B158DRAFT_2017 0.55 -0.2 146,996 - B158DRAFT_2017 0.55 -0.2 146,996 - B158DRAFT_2017 0.55 -1.8 146,996 - B158DRAFT_2017 0.55 -0.4 146,996 - B158DRAFT_2017 0.55 -0.4 146,996 - B158DRAFT_2017 0.55 +0.4 146,996 - B158DRAFT_2017 0.55 -0.5 146,996 - B158DRAFT_2017 0.55 -0.1 146,996 - B158DRAFT_2017 0.55 -1.7 146,998 + B158DRAFT_2017 0.55 +0.3 147,006 - B158DRAFT_2017 0.57 -0.6 147,008 - B158DRAFT_2017 0.57 -0.2 147,095 - B158DRAFT_2017 0.73 -0.5 147,224 + -0.2 147,232 - +1.2 147,233 - +0.6 147,248 - +0.1 147,285 - -1.2 147,340 - +1.6 147,340 - -0.1 147,391 + -0.6 147,391 + +0.0 147,392 - +1.9 147,399 - -0.1 147,399 - -0.9 147,399 - +1.1 147,424 - +0.0 147,424 - +0.1 147,426 + -0.1 147,426 + +1.0 147,431 + -0.1 147,434 - +0.6 147,434 - +1.0 147,434 - -1.0 147,434 - -0.9 147,434 - -0.4 147,434 - -1.0 147,440 + -0.5 147,475 - +0.3 147,475 - +1.2 147,482 - -1.2 147,483 + -2.5 147,483 + +0.2 147,483 + -0.2 147,483 + -0.6 147,483 + -0.9 147,483 + +0.0 147,491 - -1.6 147,491 - -1.3 147,491 - -1.6 147,491 - -0.6 147,491 - +0.2 147,522 + B158DRAFT_2018 0.11 -0.2 147,574 + B158DRAFT_2018 0.16 +0.5 147,574 + B158DRAFT_2018 0.16 -1.5 147,624 - B158DRAFT_2018 0.21 -0.8
Or see this region's nucleotide sequence