Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1952

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1951 and B158DRAFT_1952 are separated by 184 nucleotidesB158DRAFT_1952 and B158DRAFT_1953 are separated by 159 nucleotides B158DRAFT_1951: B158DRAFT_1951 - tRNA dimethylallyltransferase, at 87,949 to 88,902 _1951 B158DRAFT_1952: B158DRAFT_1952 - RNA chaperone Hfq, at 89,087 to 89,434 _1952 B158DRAFT_1953: B158DRAFT_1953 - GTP-binding protein HflX, at 89,594 to 90,892 _1953 Position (kb) 89 90Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 88.096 kb on + strand, within B158DRAFT_1951at 88.102 kb on + strand, within B158DRAFT_1951at 88.132 kb on + strand, within B158DRAFT_1951at 88.132 kb on + strand, within B158DRAFT_1951at 88.132 kb on + strand, within B158DRAFT_1951at 88.137 kb on + strand, within B158DRAFT_1951at 88.140 kb on - strand, within B158DRAFT_1951at 88.152 kb on - strand, within B158DRAFT_1951at 88.182 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.245 kb on + strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.253 kb on - strand, within B158DRAFT_1951at 88.372 kb on + strand, within B158DRAFT_1951at 88.380 kb on - strand, within B158DRAFT_1951at 88.380 kb on - strand, within B158DRAFT_1951at 88.424 kb on + strand, within B158DRAFT_1951at 88.432 kb on - strand, within B158DRAFT_1951at 88.456 kb on + strand, within B158DRAFT_1951at 88.492 kb on + strand, within B158DRAFT_1951at 88.492 kb on + strand, within B158DRAFT_1951at 88.492 kb on + strand, within B158DRAFT_1951at 88.500 kb on - strand, within B158DRAFT_1951at 88.560 kb on + strand, within B158DRAFT_1951at 88.560 kb on + strand, within B158DRAFT_1951at 88.580 kb on + strand, within B158DRAFT_1951at 88.651 kb on + strand, within B158DRAFT_1951at 88.686 kb on - strand, within B158DRAFT_1951at 88.743 kb on - strand, within B158DRAFT_1951at 88.759 kb on - strand, within B158DRAFT_1951at 88.774 kb on - strand, within B158DRAFT_1951at 88.794 kb on + strand, within B158DRAFT_1951at 88.794 kb on + strand, within B158DRAFT_1951at 88.809 kb on + strandat 88.809 kb on + strandat 88.817 kb on - strandat 88.835 kb on + strandat 88.835 kb on + strandat 88.852 kb on + strandat 88.853 kb on + strandat 88.855 kb on + strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.860 kb on - strandat 88.972 kb on - strandat 89.036 kb on + strandat 89.043 kb on - strandat 89.077 kb on + strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.085 kb on - strandat 89.096 kb on - strandat 89.105 kb on + strandat 89.164 kb on + strand, within B158DRAFT_1952at 89.172 kb on + strand, within B158DRAFT_1952at 89.172 kb on + strand, within B158DRAFT_1952at 89.261 kb on + strand, within B158DRAFT_1952at 89.288 kb on + strand, within B158DRAFT_1952at 89.355 kb on - strand, within B158DRAFT_1952at 89.468 kb on - strandat 89.501 kb on + strandat 89.501 kb on + strandat 89.509 kb on - strandat 89.579 kb on - strandat 89.613 kb on - strandat 89.618 kb on - strandat 89.655 kb on + strandat 89.655 kb on + strandat 89.662 kb on - strandat 89.663 kb on - strandat 89.699 kb on + strandat 89.704 kb on + strandat 89.704 kb on + strandat 89.704 kb on + strandat 89.726 kb on - strand, within B158DRAFT_1953at 89.750 kb on - strand, within B158DRAFT_1953at 89.760 kb on - strand, within B158DRAFT_1953at 89.808 kb on - strand, within B158DRAFT_1953at 89.808 kb on - strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.854 kb on + strand, within B158DRAFT_1953at 89.862 kb on - strand, within B158DRAFT_1953at 89.862 kb on - strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.872 kb on + strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.880 kb on - strand, within B158DRAFT_1953at 89.889 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.891 kb on + strand, within B158DRAFT_1953at 89.897 kb on - strand, within B158DRAFT_1953at 89.899 kb on - strand, within B158DRAFT_1953at 89.899 kb on - strand, within B158DRAFT_1953at 89.913 kb on + strand, within B158DRAFT_1953at 89.942 kb on - strand, within B158DRAFT_1953at 89.942 kb on - strand, within B158DRAFT_1953at 89.948 kb on + strand, within B158DRAFT_1953at 89.948 kb on + strand, within B158DRAFT_1953at 89.956 kb on - strand, within B158DRAFT_1953at 89.956 kb on - strand, within B158DRAFT_1953at 89.976 kb on - strand, within B158DRAFT_1953at 89.983 kb on + strand, within B158DRAFT_1953at 90.016 kb on - strand, within B158DRAFT_1953at 90.016 kb on - strand, within B158DRAFT_1953at 90.027 kb on - strand, within B158DRAFT_1953at 90.029 kb on + strand, within B158DRAFT_1953at 90.029 kb on + strand, within B158DRAFT_1953at 90.071 kb on + strand, within B158DRAFT_1953at 90.079 kb on - strand, within B158DRAFT_1953at 90.083 kb on - strand, within B158DRAFT_1953at 90.104 kb on - strand, within B158DRAFT_1953at 90.161 kb on + strand, within B158DRAFT_1953at 90.193 kb on + strand, within B158DRAFT_1953at 90.261 kb on + strand, within B158DRAFT_1953at 90.318 kb on + strand, within B158DRAFT_1953at 90.326 kb on - strand, within B158DRAFT_1953at 90.344 kb on - strand, within B158DRAFT_1953at 90.344 kb on - strand, within B158DRAFT_1953at 90.344 kb on - strand, within B158DRAFT_1953at 90.360 kb on + strand, within B158DRAFT_1953

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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88,096 + B158DRAFT_1951 0.15 -1.6
88,102 + B158DRAFT_1951 0.16 -0.2
88,132 + B158DRAFT_1951 0.19 +1.0
88,132 + B158DRAFT_1951 0.19 +2.9
88,132 + B158DRAFT_1951 0.19 -0.2
88,137 + B158DRAFT_1951 0.20 -1.2
88,140 - B158DRAFT_1951 0.20 -1.4
88,152 - B158DRAFT_1951 0.21 -0.5
88,182 + B158DRAFT_1951 0.24 -0.7
88,245 + B158DRAFT_1951 0.31 -0.4
88,245 + B158DRAFT_1951 0.31 +0.5
88,245 + B158DRAFT_1951 0.31 +0.2
88,245 + B158DRAFT_1951 0.31 -0.6
88,245 + B158DRAFT_1951 0.31 -2.3
88,245 + B158DRAFT_1951 0.31 +1.1
88,245 + B158DRAFT_1951 0.31 -1.2
88,245 + B158DRAFT_1951 0.31 -0.5
88,245 + B158DRAFT_1951 0.31 -0.3
88,245 + B158DRAFT_1951 0.31 +0.4
88,253 - B158DRAFT_1951 0.32 -0.4
88,253 - B158DRAFT_1951 0.32 +0.6
88,253 - B158DRAFT_1951 0.32 +1.1
88,253 - B158DRAFT_1951 0.32 -0.6
88,253 - B158DRAFT_1951 0.32 +1.2
88,253 - B158DRAFT_1951 0.32 -2.7
88,253 - B158DRAFT_1951 0.32 -0.8
88,372 + B158DRAFT_1951 0.44 +0.4
88,380 - B158DRAFT_1951 0.45 -0.5
88,380 - B158DRAFT_1951 0.45 +1.3
88,424 + B158DRAFT_1951 0.50 -0.4
88,432 - B158DRAFT_1951 0.51 -0.8
88,456 + B158DRAFT_1951 0.53 +0.9
88,492 + B158DRAFT_1951 0.57 -0.1
88,492 + B158DRAFT_1951 0.57 -1.3
88,492 + B158DRAFT_1951 0.57 +0.7
88,500 - B158DRAFT_1951 0.58 +0.4
88,560 + B158DRAFT_1951 0.64 +0.0
88,560 + B158DRAFT_1951 0.64 -1.9
88,580 + B158DRAFT_1951 0.66 -1.7
88,651 + B158DRAFT_1951 0.74 -0.9
88,686 - B158DRAFT_1951 0.77 -1.2
88,743 - B158DRAFT_1951 0.83 -0.6
88,759 - B158DRAFT_1951 0.85 -0.2
88,774 - B158DRAFT_1951 0.86 -0.9
88,794 + B158DRAFT_1951 0.89 +0.7
88,794 + B158DRAFT_1951 0.89 +0.6
88,809 + -1.4
88,809 + -1.4
88,817 - -0.5
88,835 + +0.4
88,835 + +0.8
88,852 + -0.8
88,853 + -1.2
88,855 + -0.9
88,860 - +0.1
88,860 - -0.5
88,860 - +0.6
88,860 - +0.1
88,972 - +8.2
89,036 + +7.3
89,043 - +8.7
89,077 + +8.5
89,085 - +8.4
89,085 - +8.9
89,085 - +8.8
89,085 - +9.1
89,096 - +8.8
89,105 + +8.9
89,164 + B158DRAFT_1952 0.22 +8.4
89,172 + B158DRAFT_1952 0.24 +8.8
89,172 + B158DRAFT_1952 0.24 +8.5
89,261 + B158DRAFT_1952 0.50 +7.9
89,288 + B158DRAFT_1952 0.58 +5.4
89,355 - B158DRAFT_1952 0.77 +7.8
89,468 - +1.9
89,501 + -0.9
89,501 + -2.6
89,509 - -0.7
89,579 - -0.7
89,613 - -0.6
89,618 - +0.6
89,655 + -0.5
89,655 + -1.2
89,662 - +1.2
89,663 - +0.3
89,699 + -0.5
89,704 + -0.8
89,704 + +0.2
89,704 + +0.1
89,726 - B158DRAFT_1953 0.10 -1.8
89,750 - B158DRAFT_1953 0.12 -0.5
89,760 - B158DRAFT_1953 0.13 +0.2
89,808 - B158DRAFT_1953 0.16 +0.7
89,808 - B158DRAFT_1953 0.16 -0.2
89,854 + B158DRAFT_1953 0.20 +9.6
89,854 + B158DRAFT_1953 0.20 +1.0
89,854 + B158DRAFT_1953 0.20 -0.7
89,862 - B158DRAFT_1953 0.21 +2.6
89,862 - B158DRAFT_1953 0.21 +0.6
89,872 + B158DRAFT_1953 0.21 -1.7
89,872 + B158DRAFT_1953 0.21 -1.7
89,872 + B158DRAFT_1953 0.21 +0.2
89,880 - B158DRAFT_1953 0.22 +0.1
89,880 - B158DRAFT_1953 0.22 +1.0
89,880 - B158DRAFT_1953 0.22 -1.3
89,889 + B158DRAFT_1953 0.23 +1.6
89,891 + B158DRAFT_1953 0.23 -2.1
89,891 + B158DRAFT_1953 0.23 -1.5
89,891 + B158DRAFT_1953 0.23 -0.1
89,891 + B158DRAFT_1953 0.23 -0.7
89,891 + B158DRAFT_1953 0.23 -2.2
89,897 - B158DRAFT_1953 0.23 +4.5
89,899 - B158DRAFT_1953 0.23 -0.0
89,899 - B158DRAFT_1953 0.23 +0.4
89,913 + B158DRAFT_1953 0.25 -0.9
89,942 - B158DRAFT_1953 0.27 -0.2
89,942 - B158DRAFT_1953 0.27 +0.1
89,948 + B158DRAFT_1953 0.27 -1.1
89,948 + B158DRAFT_1953 0.27 -0.6
89,956 - B158DRAFT_1953 0.28 -0.7
89,956 - B158DRAFT_1953 0.28 -0.2
89,976 - B158DRAFT_1953 0.29 -1.4
89,983 + B158DRAFT_1953 0.30 -0.1
90,016 - B158DRAFT_1953 0.32 -0.7
90,016 - B158DRAFT_1953 0.32 -1.1
90,027 - B158DRAFT_1953 0.33 +0.7
90,029 + B158DRAFT_1953 0.33 -0.3
90,029 + B158DRAFT_1953 0.33 -0.8
90,071 + B158DRAFT_1953 0.37 +0.1
90,079 - B158DRAFT_1953 0.37 -0.6
90,083 - B158DRAFT_1953 0.38 +0.2
90,104 - B158DRAFT_1953 0.39 +0.6
90,161 + B158DRAFT_1953 0.44 -2.4
90,193 + B158DRAFT_1953 0.46 -1.5
90,261 + B158DRAFT_1953 0.51 +0.8
90,318 + B158DRAFT_1953 0.56 +0.1
90,326 - B158DRAFT_1953 0.56 -1.0
90,344 - B158DRAFT_1953 0.58 -0.7
90,344 - B158DRAFT_1953 0.58 -0.5
90,344 - B158DRAFT_1953 0.58 -1.0
90,360 + B158DRAFT_1953 0.59 +0.5

Or see this region's nucleotide sequence