Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1797 and B158DRAFT_1798 are separated by 79 nucleotides B158DRAFT_1798 and B158DRAFT_1799 are separated by 125 nucleotides
B158DRAFT_1797: B158DRAFT_1797 - sodium/proton antiporter, CPA1 family (TC 2.A.36), at 1,891,150 to 1,893,021
_1797
B158DRAFT_1798: B158DRAFT_1798 - diguanylate cyclase (GGDEF) domain, at 1,893,101 to 1,895,113
_1798
B158DRAFT_1799: B158DRAFT_1799 - hypothetical protein, at 1,895,239 to 1,896,567
_1799
Position (kb)
1893
1894
1895
1896 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1892.116 kb on - strand, within B158DRAFT_1797 at 1892.161 kb on - strand, within B158DRAFT_1797 at 1892.220 kb on + strand, within B158DRAFT_1797 at 1892.220 kb on + strand, within B158DRAFT_1797 at 1892.228 kb on - strand, within B158DRAFT_1797 at 1892.228 kb on - strand, within B158DRAFT_1797 at 1892.240 kb on - strand, within B158DRAFT_1797 at 1892.242 kb on + strand, within B158DRAFT_1797 at 1892.250 kb on - strand, within B158DRAFT_1797 at 1892.316 kb on + strand, within B158DRAFT_1797 at 1892.318 kb on + strand, within B158DRAFT_1797 at 1892.318 kb on + strand, within B158DRAFT_1797 at 1892.318 kb on + strand, within B158DRAFT_1797 at 1892.326 kb on - strand, within B158DRAFT_1797 at 1892.326 kb on - strand, within B158DRAFT_1797 at 1892.380 kb on - strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.487 kb on + strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.495 kb on - strand, within B158DRAFT_1797 at 1892.558 kb on - strand, within B158DRAFT_1797 at 1892.558 kb on - strand, within B158DRAFT_1797 at 1892.560 kb on - strand, within B158DRAFT_1797 at 1892.563 kb on + strand, within B158DRAFT_1797 at 1892.565 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.573 kb on + strand, within B158DRAFT_1797 at 1892.581 kb on - strand, within B158DRAFT_1797 at 1892.581 kb on - strand, within B158DRAFT_1797 at 1892.600 kb on + strand, within B158DRAFT_1797 at 1892.631 kb on - strand, within B158DRAFT_1797 at 1892.633 kb on + strand, within B158DRAFT_1797 at 1892.837 kb on - strand at 1892.837 kb on - strand at 1892.852 kb on - strand at 1892.982 kb on + strand at 1893.025 kb on + strand at 1893.035 kb on + strand at 1893.054 kb on + strand at 1893.062 kb on - strand at 1893.062 kb on - strand at 1893.062 kb on - strand at 1893.150 kb on - strand at 1893.195 kb on + strand at 1893.200 kb on + strand at 1893.203 kb on - strand at 1893.240 kb on + strand at 1893.314 kb on + strand, within B158DRAFT_1798 at 1893.322 kb on + strand, within B158DRAFT_1798 at 1893.371 kb on + strand, within B158DRAFT_1798 at 1893.371 kb on - strand, within B158DRAFT_1798 at 1893.379 kb on - strand, within B158DRAFT_1798 at 1893.627 kb on + strand, within B158DRAFT_1798 at 1893.627 kb on + strand, within B158DRAFT_1798 at 1893.737 kb on + strand, within B158DRAFT_1798 at 1893.853 kb on + strand, within B158DRAFT_1798 at 1893.923 kb on - strand, within B158DRAFT_1798 at 1894.134 kb on - strand, within B158DRAFT_1798 at 1894.187 kb on - strand, within B158DRAFT_1798 at 1894.189 kb on + strand, within B158DRAFT_1798 at 1894.197 kb on - strand, within B158DRAFT_1798 at 1894.242 kb on - strand, within B158DRAFT_1798 at 1894.283 kb on + strand, within B158DRAFT_1798 at 1894.284 kb on + strand, within B158DRAFT_1798 at 1894.297 kb on + strand, within B158DRAFT_1798 at 1894.323 kb on + strand, within B158DRAFT_1798 at 1894.443 kb on + strand, within B158DRAFT_1798 at 1894.445 kb on - strand, within B158DRAFT_1798 at 1894.544 kb on - strand, within B158DRAFT_1798 at 1894.640 kb on - strand, within B158DRAFT_1798 at 1894.641 kb on - strand, within B158DRAFT_1798 at 1894.647 kb on - strand, within B158DRAFT_1798 at 1894.721 kb on - strand, within B158DRAFT_1798 at 1894.948 kb on - strand at 1894.987 kb on + strand at 1894.995 kb on - strand at 1894.996 kb on + strand at 1895.004 kb on - strand at 1895.004 kb on - strand at 1895.004 kb on - strand at 1895.121 kb on + strand at 1895.263 kb on + strand at 1895.264 kb on - strand at 1895.284 kb on + strand at 1895.290 kb on + strand at 1895.290 kb on - strand at 1895.290 kb on - strand at 1895.290 kb on - strand at 1895.431 kb on + strand, within B158DRAFT_1799 at 1895.443 kb on + strand, within B158DRAFT_1799 at 1895.449 kb on + strand, within B158DRAFT_1799 at 1895.449 kb on - strand, within B158DRAFT_1799 at 1895.451 kb on - strand, within B158DRAFT_1799 at 1895.457 kb on - strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.470 kb on + strand, within B158DRAFT_1799 at 1895.480 kb on + strand, within B158DRAFT_1799 at 1895.483 kb on - strand, within B158DRAFT_1799 at 1895.522 kb on + strand, within B158DRAFT_1799 at 1895.530 kb on - strand, within B158DRAFT_1799 at 1895.530 kb on - strand, within B158DRAFT_1799 at 1895.567 kb on + strand, within B158DRAFT_1799 at 1895.575 kb on - strand, within B158DRAFT_1799 at 1895.583 kb on - strand, within B158DRAFT_1799 at 1895.626 kb on + strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.634 kb on - strand, within B158DRAFT_1799 at 1895.776 kb on + strand, within B158DRAFT_1799 at 1895.828 kb on - strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.863 kb on + strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.871 kb on - strand, within B158DRAFT_1799 at 1895.873 kb on + strand, within B158DRAFT_1799 at 1895.891 kb on - strand, within B158DRAFT_1799 at 1895.901 kb on + strand, within B158DRAFT_1799 at 1895.901 kb on + strand, within B158DRAFT_1799 at 1895.971 kb on + strand, within B158DRAFT_1799 at 1895.986 kb on - strand, within B158DRAFT_1799 at 1895.994 kb on + strand, within B158DRAFT_1799 at 1896.060 kb on - strand, within B158DRAFT_1799 at 1896.071 kb on - strand, within B158DRAFT_1799 at 1896.092 kb on - strand, within B158DRAFT_1799 at 1896.092 kb on - strand, within B158DRAFT_1799
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,892,116 - B158DRAFT_1797 0.52 +0.4 1,892,161 - B158DRAFT_1797 0.54 -1.8 1,892,220 + B158DRAFT_1797 0.57 -1.2 1,892,220 + B158DRAFT_1797 0.57 -1.8 1,892,228 - B158DRAFT_1797 0.58 -1.2 1,892,228 - B158DRAFT_1797 0.58 -1.4 1,892,240 - B158DRAFT_1797 0.58 +0.3 1,892,242 + B158DRAFT_1797 0.58 -0.5 1,892,250 - B158DRAFT_1797 0.59 -0.5 1,892,316 + B158DRAFT_1797 0.62 -2.3 1,892,318 + B158DRAFT_1797 0.62 -1.1 1,892,318 + B158DRAFT_1797 0.62 -0.3 1,892,318 + B158DRAFT_1797 0.62 -2.3 1,892,326 - B158DRAFT_1797 0.63 -1.2 1,892,326 - B158DRAFT_1797 0.63 +0.7 1,892,380 - B158DRAFT_1797 0.66 -0.7 1,892,487 + B158DRAFT_1797 0.71 -2.0 1,892,487 + B158DRAFT_1797 0.71 +0.1 1,892,487 + B158DRAFT_1797 0.71 -1.4 1,892,487 + B158DRAFT_1797 0.71 -1.0 1,892,487 + B158DRAFT_1797 0.71 -1.0 1,892,487 + B158DRAFT_1797 0.71 -1.0 1,892,487 + B158DRAFT_1797 0.71 +2.6 1,892,495 - B158DRAFT_1797 0.72 -0.5 1,892,495 - B158DRAFT_1797 0.72 +0.2 1,892,495 - B158DRAFT_1797 0.72 +1.3 1,892,495 - B158DRAFT_1797 0.72 -0.3 1,892,495 - B158DRAFT_1797 0.72 -0.9 1,892,495 - B158DRAFT_1797 0.72 +1.7 1,892,495 - B158DRAFT_1797 0.72 -0.6 1,892,558 - B158DRAFT_1797 0.75 -0.6 1,892,558 - B158DRAFT_1797 0.75 -0.9 1,892,560 - B158DRAFT_1797 0.75 +0.7 1,892,563 + B158DRAFT_1797 0.75 -1.4 1,892,565 + B158DRAFT_1797 0.76 -0.5 1,892,573 + B158DRAFT_1797 0.76 +0.9 1,892,573 + B158DRAFT_1797 0.76 +0.1 1,892,573 + B158DRAFT_1797 0.76 +1.7 1,892,573 + B158DRAFT_1797 0.76 -1.2 1,892,573 + B158DRAFT_1797 0.76 -0.6 1,892,573 + B158DRAFT_1797 0.76 -0.4 1,892,581 - B158DRAFT_1797 0.76 -0.8 1,892,581 - B158DRAFT_1797 0.76 +0.7 1,892,600 + B158DRAFT_1797 0.77 -0.2 1,892,631 - B158DRAFT_1797 0.79 -0.3 1,892,633 + B158DRAFT_1797 0.79 -1.4 1,892,837 - -0.2 1,892,837 - -0.3 1,892,852 - -2.3 1,892,982 + -0.4 1,893,025 + -1.3 1,893,035 + -0.7 1,893,054 + -1.0 1,893,062 - -0.8 1,893,062 - +0.1 1,893,062 - -0.5 1,893,150 - +1.0 1,893,195 + +1.2 1,893,200 + +0.4 1,893,203 - -0.6 1,893,240 + -0.7 1,893,314 + B158DRAFT_1798 0.11 -0.9 1,893,322 + B158DRAFT_1798 0.11 -1.6 1,893,371 + B158DRAFT_1798 0.13 -1.1 1,893,371 - B158DRAFT_1798 0.13 +0.4 1,893,379 - B158DRAFT_1798 0.14 -1.1 1,893,627 + B158DRAFT_1798 0.26 -1.0 1,893,627 + B158DRAFT_1798 0.26 -1.6 1,893,737 + B158DRAFT_1798 0.32 +1.9 1,893,853 + B158DRAFT_1798 0.37 -0.5 1,893,923 - B158DRAFT_1798 0.41 -1.5 1,894,134 - B158DRAFT_1798 0.51 -0.5 1,894,187 - B158DRAFT_1798 0.54 +2.9 1,894,189 + B158DRAFT_1798 0.54 -1.5 1,894,197 - B158DRAFT_1798 0.54 -0.3 1,894,242 - B158DRAFT_1798 0.57 -0.9 1,894,283 + B158DRAFT_1798 0.59 -0.8 1,894,284 + B158DRAFT_1798 0.59 -0.8 1,894,297 + B158DRAFT_1798 0.59 -1.4 1,894,323 + B158DRAFT_1798 0.61 -1.4 1,894,443 + B158DRAFT_1798 0.67 -0.6 1,894,445 - B158DRAFT_1798 0.67 -0.3 1,894,544 - B158DRAFT_1798 0.72 +0.9 1,894,640 - B158DRAFT_1798 0.76 +0.5 1,894,641 - B158DRAFT_1798 0.77 -0.1 1,894,647 - B158DRAFT_1798 0.77 -0.4 1,894,721 - B158DRAFT_1798 0.80 +0.2 1,894,948 - -1.5 1,894,987 + -0.1 1,894,995 - -0.4 1,894,996 + -0.8 1,895,004 - +0.6 1,895,004 - -0.5 1,895,004 - -1.2 1,895,121 + -0.0 1,895,263 + +0.3 1,895,264 - -1.3 1,895,284 + +0.2 1,895,290 + -0.3 1,895,290 - +0.4 1,895,290 - +1.0 1,895,290 - -0.2 1,895,431 + B158DRAFT_1799 0.14 -0.2 1,895,443 + B158DRAFT_1799 0.15 -1.1 1,895,449 + B158DRAFT_1799 0.16 -0.6 1,895,449 - B158DRAFT_1799 0.16 +0.3 1,895,451 - B158DRAFT_1799 0.16 +1.7 1,895,457 - B158DRAFT_1799 0.16 -1.2 1,895,470 + B158DRAFT_1799 0.17 +1.4 1,895,470 + B158DRAFT_1799 0.17 -2.3 1,895,470 + B158DRAFT_1799 0.17 -0.2 1,895,480 + B158DRAFT_1799 0.18 -2.8 1,895,483 - B158DRAFT_1799 0.18 -2.0 1,895,522 + B158DRAFT_1799 0.21 -1.0 1,895,530 - B158DRAFT_1799 0.22 +0.3 1,895,530 - B158DRAFT_1799 0.22 -1.5 1,895,567 + B158DRAFT_1799 0.25 -1.4 1,895,575 - B158DRAFT_1799 0.25 -1.4 1,895,583 - B158DRAFT_1799 0.26 +0.0 1,895,626 + B158DRAFT_1799 0.29 +3.1 1,895,634 - B158DRAFT_1799 0.30 -0.6 1,895,634 - B158DRAFT_1799 0.30 -0.9 1,895,634 - B158DRAFT_1799 0.30 -2.6 1,895,776 + B158DRAFT_1799 0.40 +2.2 1,895,828 - B158DRAFT_1799 0.44 -0.2 1,895,863 + B158DRAFT_1799 0.47 -0.0 1,895,863 + B158DRAFT_1799 0.47 +1.6 1,895,863 + B158DRAFT_1799 0.47 +0.1 1,895,871 - B158DRAFT_1799 0.48 -0.7 1,895,871 - B158DRAFT_1799 0.48 -0.1 1,895,871 - B158DRAFT_1799 0.48 -1.1 1,895,873 + B158DRAFT_1799 0.48 -0.9 1,895,891 - B158DRAFT_1799 0.49 -0.7 1,895,901 + B158DRAFT_1799 0.50 -1.4 1,895,901 + B158DRAFT_1799 0.50 +1.3 1,895,971 + B158DRAFT_1799 0.55 +0.3 1,895,986 - B158DRAFT_1799 0.56 +2.5 1,895,994 + B158DRAFT_1799 0.57 -2.0 1,896,060 - B158DRAFT_1799 0.62 -1.8 1,896,071 - B158DRAFT_1799 0.63 -1.8 1,896,092 - B158DRAFT_1799 0.64 -1.2 1,896,092 - B158DRAFT_1799 0.64 -1.5
Or see this region's nucleotide sequence