Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1783 and B158DRAFT_1784 overlap by 23 nucleotides B158DRAFT_1784 and B158DRAFT_1785 are separated by 37 nucleotides B158DRAFT_1785 and B158DRAFT_1786 are separated by 19 nucleotides B158DRAFT_1786 and B158DRAFT_1787 are separated by 455 nucleotides
B158DRAFT_1783: B158DRAFT_1783 - Choline/ethanolamine kinase., at 1,877,954 to 1,878,790
_1783
B158DRAFT_1784: B158DRAFT_1784 - nicotinamide mononucleotide transporter PnuC, at 1,878,768 to 1,879,379
_1784
B158DRAFT_1785: B158DRAFT_1785 - Domain of unknown function DUF77., at 1,879,417 to 1,879,668
_1785
B158DRAFT_1786: B158DRAFT_1786 - Outer membrane receptor proteins, mostly Fe transport, at 1,879,688 to 1,881,883
_1786
B158DRAFT_1787: B158DRAFT_1787 - hypothetical protein, at 1,882,339 to 1,883,112
_1787
Position (kb)
1879
1880
1881
1882 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1878.775 kb on + strand at 1878.775 kb on + strand at 1878.783 kb on - strand at 1878.787 kb on + strand at 1878.790 kb on - strand at 1878.795 kb on - strand at 1878.795 kb on - strand at 1878.803 kb on + strand at 1878.822 kb on + strand at 1878.830 kb on - strand, within B158DRAFT_1784 at 1878.830 kb on - strand, within B158DRAFT_1784 at 1878.944 kb on - strand, within B158DRAFT_1784 at 1878.955 kb on + strand, within B158DRAFT_1784 at 1878.955 kb on + strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.963 kb on - strand, within B158DRAFT_1784 at 1878.965 kb on + strand, within B158DRAFT_1784 at 1878.973 kb on - strand, within B158DRAFT_1784 at 1879.069 kb on - strand, within B158DRAFT_1784 at 1879.107 kb on - strand, within B158DRAFT_1784 at 1879.157 kb on - strand, within B158DRAFT_1784 at 1879.185 kb on - strand, within B158DRAFT_1784 at 1879.215 kb on + strand, within B158DRAFT_1784 at 1879.223 kb on - strand, within B158DRAFT_1784 at 1879.223 kb on - strand, within B158DRAFT_1784 at 1879.223 kb on - strand, within B158DRAFT_1784 at 1879.256 kb on + strand, within B158DRAFT_1784 at 1879.302 kb on + strand, within B158DRAFT_1784 at 1879.310 kb on - strand, within B158DRAFT_1784 at 1879.331 kb on - strand at 1879.360 kb on - strand at 1879.486 kb on + strand, within B158DRAFT_1785 at 1879.494 kb on - strand, within B158DRAFT_1785 at 1879.494 kb on - strand, within B158DRAFT_1785 at 1879.520 kb on + strand, within B158DRAFT_1785 at 1879.566 kb on - strand, within B158DRAFT_1785 at 1879.652 kb on - strand at 1879.652 kb on - strand at 1879.663 kb on - strand at 1879.694 kb on + strand at 1879.694 kb on + strand at 1879.736 kb on - strand at 1879.858 kb on + strand at 1879.899 kb on + strand at 1879.899 kb on + strand at 1879.899 kb on + strand at 1879.907 kb on - strand at 1879.907 kb on - strand at 1879.907 kb on - strand at 1879.907 kb on - strand at 1880.171 kb on - strand, within B158DRAFT_1786 at 1880.208 kb on + strand, within B158DRAFT_1786 at 1880.216 kb on - strand, within B158DRAFT_1786 at 1880.243 kb on + strand, within B158DRAFT_1786 at 1880.301 kb on + strand, within B158DRAFT_1786 at 1880.329 kb on + strand, within B158DRAFT_1786 at 1880.432 kb on - strand, within B158DRAFT_1786 at 1880.443 kb on - strand, within B158DRAFT_1786 at 1880.443 kb on - strand, within B158DRAFT_1786 at 1880.460 kb on + strand, within B158DRAFT_1786 at 1880.600 kb on - strand, within B158DRAFT_1786 at 1880.633 kb on - strand, within B158DRAFT_1786 at 1880.648 kb on + strand, within B158DRAFT_1786 at 1880.648 kb on + strand, within B158DRAFT_1786 at 1880.656 kb on - strand, within B158DRAFT_1786 at 1880.656 kb on - strand, within B158DRAFT_1786 at 1880.656 kb on - strand, within B158DRAFT_1786 at 1880.656 kb on - strand, within B158DRAFT_1786 at 1880.668 kb on - strand, within B158DRAFT_1786 at 1880.790 kb on + strand, within B158DRAFT_1786 at 1880.790 kb on + strand, within B158DRAFT_1786 at 1880.790 kb on + strand, within B158DRAFT_1786 at 1880.798 kb on - strand, within B158DRAFT_1786 at 1880.798 kb on - strand, within B158DRAFT_1786 at 1880.803 kb on - strand, within B158DRAFT_1786 at 1880.803 kb on - strand, within B158DRAFT_1786 at 1880.824 kb on + strand, within B158DRAFT_1786 at 1880.832 kb on - strand, within B158DRAFT_1786 at 1880.930 kb on + strand, within B158DRAFT_1786 at 1880.938 kb on - strand, within B158DRAFT_1786 at 1880.938 kb on - strand, within B158DRAFT_1786 at 1880.938 kb on - strand, within B158DRAFT_1786 at 1880.938 kb on - strand, within B158DRAFT_1786 at 1880.938 kb on - strand, within B158DRAFT_1786 at 1880.949 kb on + strand, within B158DRAFT_1786 at 1880.949 kb on + strand, within B158DRAFT_1786 at 1880.949 kb on + strand, within B158DRAFT_1786 at 1880.957 kb on - strand, within B158DRAFT_1786 at 1880.975 kb on + strand, within B158DRAFT_1786 at 1880.985 kb on - strand, within B158DRAFT_1786 at 1880.990 kb on - strand, within B158DRAFT_1786 at 1880.992 kb on + strand, within B158DRAFT_1786 at 1881.010 kb on - strand, within B158DRAFT_1786 at 1881.010 kb on - strand, within B158DRAFT_1786 at 1881.011 kb on - strand, within B158DRAFT_1786 at 1881.064 kb on + strand, within B158DRAFT_1786 at 1881.072 kb on - strand, within B158DRAFT_1786 at 1881.077 kb on - strand, within B158DRAFT_1786 at 1881.084 kb on + strand, within B158DRAFT_1786 at 1881.084 kb on + strand, within B158DRAFT_1786 at 1881.084 kb on + strand, within B158DRAFT_1786 at 1881.084 kb on + strand, within B158DRAFT_1786 at 1881.087 kb on - strand, within B158DRAFT_1786 at 1881.092 kb on - strand, within B158DRAFT_1786 at 1881.092 kb on - strand, within B158DRAFT_1786 at 1881.102 kb on - strand, within B158DRAFT_1786 at 1881.136 kb on + strand, within B158DRAFT_1786 at 1881.181 kb on - strand, within B158DRAFT_1786 at 1881.255 kb on + strand, within B158DRAFT_1786 at 1881.268 kb on - strand, within B158DRAFT_1786 at 1881.293 kb on + strand, within B158DRAFT_1786 at 1881.299 kb on + strand, within B158DRAFT_1786 at 1881.302 kb on - strand, within B158DRAFT_1786 at 1881.312 kb on - strand, within B158DRAFT_1786 at 1881.322 kb on - strand, within B158DRAFT_1786 at 1881.322 kb on - strand, within B158DRAFT_1786 at 1881.336 kb on + strand, within B158DRAFT_1786 at 1881.344 kb on - strand, within B158DRAFT_1786 at 1881.395 kb on - strand, within B158DRAFT_1786 at 1881.411 kb on + strand, within B158DRAFT_1786 at 1881.423 kb on + strand, within B158DRAFT_1786 at 1881.478 kb on + strand, within B158DRAFT_1786 at 1881.587 kb on - strand, within B158DRAFT_1786 at 1881.587 kb on - strand, within B158DRAFT_1786 at 1881.623 kb on + strand, within B158DRAFT_1786 at 1881.666 kb on + strand at 1881.690 kb on + strand at 1881.698 kb on - strand at 1881.719 kb on + strand at 1881.727 kb on - strand at 1881.727 kb on - strand at 1881.747 kb on + strand at 1881.770 kb on - strand at 1881.778 kb on - strand at 1881.883 kb on + strand at 1881.912 kb on + strand at 1881.966 kb on - strand at 1881.968 kb on + strand at 1881.968 kb on + strand at 1881.976 kb on - strand at 1882.042 kb on - strand at 1882.076 kb on + strand at 1882.114 kb on + strand at 1882.149 kb on + strand at 1882.210 kb on - strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.234 kb on + strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.242 kb on - strand at 1882.268 kb on + strand at 1882.302 kb on + strand at 1882.302 kb on + strand at 1882.302 kb on + strand at 1882.308 kb on + strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.310 kb on - strand at 1882.323 kb on - strand at 1882.331 kb on + strand at 1882.339 kb on + strand at 1882.348 kb on + strand at 1882.357 kb on - strand at 1882.461 kb on - strand, within B158DRAFT_1787 at 1882.627 kb on - strand, within B158DRAFT_1787 at 1882.656 kb on + strand, within B158DRAFT_1787 at 1882.718 kb on + strand, within B158DRAFT_1787 at 1882.754 kb on + strand, within B158DRAFT_1787 at 1882.754 kb on + strand, within B158DRAFT_1787 at 1882.754 kb on + strand, within B158DRAFT_1787 at 1882.762 kb on - strand, within B158DRAFT_1787 at 1882.762 kb on - strand, within B158DRAFT_1787 at 1882.793 kb on + strand, within B158DRAFT_1787
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,878,775 + +0.6 1,878,775 + +0.7 1,878,783 - -0.2 1,878,787 + -0.9 1,878,790 - -0.3 1,878,795 - -1.7 1,878,795 - +2.9 1,878,803 + -1.0 1,878,822 + -0.6 1,878,830 - B158DRAFT_1784 0.10 +1.0 1,878,830 - B158DRAFT_1784 0.10 -0.8 1,878,944 - B158DRAFT_1784 0.29 -0.2 1,878,955 + B158DRAFT_1784 0.31 -1.0 1,878,955 + B158DRAFT_1784 0.31 -0.8 1,878,963 - B158DRAFT_1784 0.32 +0.4 1,878,963 - B158DRAFT_1784 0.32 +0.1 1,878,963 - B158DRAFT_1784 0.32 -0.2 1,878,963 - B158DRAFT_1784 0.32 -0.3 1,878,963 - B158DRAFT_1784 0.32 +1.4 1,878,963 - B158DRAFT_1784 0.32 -1.3 1,878,963 - B158DRAFT_1784 0.32 -0.8 1,878,963 - B158DRAFT_1784 0.32 -0.7 1,878,965 + B158DRAFT_1784 0.32 -0.8 1,878,973 - B158DRAFT_1784 0.33 +0.4 1,879,069 - B158DRAFT_1784 0.49 -1.6 1,879,107 - B158DRAFT_1784 0.55 +0.2 1,879,157 - B158DRAFT_1784 0.64 -0.5 1,879,185 - B158DRAFT_1784 0.68 +1.8 1,879,215 + B158DRAFT_1784 0.73 -1.3 1,879,223 - B158DRAFT_1784 0.74 -1.2 1,879,223 - B158DRAFT_1784 0.74 -1.1 1,879,223 - B158DRAFT_1784 0.74 -1.1 1,879,256 + B158DRAFT_1784 0.80 -1.6 1,879,302 + B158DRAFT_1784 0.87 +0.2 1,879,310 - B158DRAFT_1784 0.89 -0.9 1,879,331 - +0.5 1,879,360 - +0.4 1,879,486 + B158DRAFT_1785 0.27 -2.3 1,879,494 - B158DRAFT_1785 0.31 +0.3 1,879,494 - B158DRAFT_1785 0.31 +0.2 1,879,520 + B158DRAFT_1785 0.41 -0.2 1,879,566 - B158DRAFT_1785 0.59 -1.0 1,879,652 - +0.4 1,879,652 - -0.4 1,879,663 - -0.7 1,879,694 + +0.7 1,879,694 + -0.1 1,879,736 - -0.1 1,879,858 + +0.8 1,879,899 + -0.8 1,879,899 + -0.6 1,879,899 + -0.9 1,879,907 - +0.4 1,879,907 - -0.6 1,879,907 - -1.5 1,879,907 - +0.0 1,880,171 - B158DRAFT_1786 0.22 -1.8 1,880,208 + B158DRAFT_1786 0.24 +0.3 1,880,216 - B158DRAFT_1786 0.24 -1.7 1,880,243 + B158DRAFT_1786 0.25 -0.1 1,880,301 + B158DRAFT_1786 0.28 +0.4 1,880,329 + B158DRAFT_1786 0.29 -2.0 1,880,432 - B158DRAFT_1786 0.34 -1.6 1,880,443 - B158DRAFT_1786 0.34 -1.0 1,880,443 - B158DRAFT_1786 0.34 -0.7 1,880,460 + B158DRAFT_1786 0.35 -0.8 1,880,600 - B158DRAFT_1786 0.42 -1.5 1,880,633 - B158DRAFT_1786 0.43 +0.2 1,880,648 + B158DRAFT_1786 0.44 +0.7 1,880,648 + B158DRAFT_1786 0.44 -0.2 1,880,656 - B158DRAFT_1786 0.44 -1.8 1,880,656 - B158DRAFT_1786 0.44 -0.8 1,880,656 - B158DRAFT_1786 0.44 -1.1 1,880,656 - B158DRAFT_1786 0.44 -1.1 1,880,668 - B158DRAFT_1786 0.45 -0.4 1,880,790 + B158DRAFT_1786 0.50 -0.9 1,880,790 + B158DRAFT_1786 0.50 +0.6 1,880,790 + B158DRAFT_1786 0.50 -0.3 1,880,798 - B158DRAFT_1786 0.51 +0.4 1,880,798 - B158DRAFT_1786 0.51 -0.2 1,880,803 - B158DRAFT_1786 0.51 +0.1 1,880,803 - B158DRAFT_1786 0.51 -0.9 1,880,824 + B158DRAFT_1786 0.52 +0.2 1,880,832 - B158DRAFT_1786 0.52 -1.5 1,880,930 + B158DRAFT_1786 0.57 -0.5 1,880,938 - B158DRAFT_1786 0.57 -1.2 1,880,938 - B158DRAFT_1786 0.57 +0.7 1,880,938 - B158DRAFT_1786 0.57 -0.7 1,880,938 - B158DRAFT_1786 0.57 +0.9 1,880,938 - B158DRAFT_1786 0.57 -0.9 1,880,949 + B158DRAFT_1786 0.57 -0.2 1,880,949 + B158DRAFT_1786 0.57 -1.3 1,880,949 + B158DRAFT_1786 0.57 +1.1 1,880,957 - B158DRAFT_1786 0.58 -1.3 1,880,975 + B158DRAFT_1786 0.59 +0.6 1,880,985 - B158DRAFT_1786 0.59 -0.6 1,880,990 - B158DRAFT_1786 0.59 -1.5 1,880,992 + B158DRAFT_1786 0.59 +0.1 1,881,010 - B158DRAFT_1786 0.60 +0.2 1,881,010 - B158DRAFT_1786 0.60 -0.7 1,881,011 - B158DRAFT_1786 0.60 -0.8 1,881,064 + B158DRAFT_1786 0.63 -1.0 1,881,072 - B158DRAFT_1786 0.63 -0.9 1,881,077 - B158DRAFT_1786 0.63 -1.0 1,881,084 + B158DRAFT_1786 0.64 +0.4 1,881,084 + B158DRAFT_1786 0.64 +0.3 1,881,084 + B158DRAFT_1786 0.64 -0.5 1,881,084 + B158DRAFT_1786 0.64 +0.1 1,881,087 - B158DRAFT_1786 0.64 -1.8 1,881,092 - B158DRAFT_1786 0.64 +0.7 1,881,092 - B158DRAFT_1786 0.64 +1.5 1,881,102 - B158DRAFT_1786 0.64 -0.2 1,881,136 + B158DRAFT_1786 0.66 -0.7 1,881,181 - B158DRAFT_1786 0.68 -0.6 1,881,255 + B158DRAFT_1786 0.71 -1.8 1,881,268 - B158DRAFT_1786 0.72 +1.1 1,881,293 + B158DRAFT_1786 0.73 +0.5 1,881,299 + B158DRAFT_1786 0.73 -0.3 1,881,302 - B158DRAFT_1786 0.73 -0.6 1,881,312 - B158DRAFT_1786 0.74 -0.1 1,881,322 - B158DRAFT_1786 0.74 +1.2 1,881,322 - B158DRAFT_1786 0.74 -2.9 1,881,336 + B158DRAFT_1786 0.75 -0.5 1,881,344 - B158DRAFT_1786 0.75 -0.6 1,881,395 - B158DRAFT_1786 0.78 -0.4 1,881,411 + B158DRAFT_1786 0.78 -0.8 1,881,423 + B158DRAFT_1786 0.79 +1.5 1,881,478 + B158DRAFT_1786 0.82 +0.6 1,881,587 - B158DRAFT_1786 0.86 -1.6 1,881,587 - B158DRAFT_1786 0.86 -1.6 1,881,623 + B158DRAFT_1786 0.88 -0.0 1,881,666 + -0.4 1,881,690 + +0.6 1,881,698 - +0.1 1,881,719 + -2.2 1,881,727 - -0.2 1,881,727 - -0.5 1,881,747 + -0.3 1,881,770 - -0.8 1,881,778 - -0.6 1,881,883 + -0.3 1,881,912 + -0.8 1,881,966 - -1.0 1,881,968 + -0.2 1,881,968 + -0.3 1,881,976 - +0.9 1,882,042 - -1.2 1,882,076 + -0.5 1,882,114 + -0.8 1,882,149 + -0.4 1,882,210 - -1.6 1,882,234 + -0.9 1,882,234 + -2.1 1,882,234 + -0.2 1,882,234 + -1.9 1,882,234 + -1.4 1,882,234 + -0.3 1,882,234 + +0.8 1,882,234 + +0.1 1,882,234 + -0.1 1,882,234 + -1.4 1,882,234 + -0.5 1,882,234 + +0.8 1,882,234 + +0.0 1,882,234 + -0.5 1,882,234 + -0.5 1,882,242 - -0.1 1,882,242 - -1.0 1,882,242 - -0.6 1,882,242 - -1.4 1,882,242 - -0.1 1,882,242 - +0.2 1,882,242 - -0.0 1,882,242 - -1.3 1,882,242 - -0.5 1,882,242 - -0.4 1,882,242 - +0.7 1,882,242 - -1.9 1,882,242 - -1.1 1,882,242 - -0.3 1,882,242 - +1.0 1,882,242 - -0.1 1,882,242 - -2.1 1,882,242 - +0.9 1,882,242 - +0.7 1,882,242 - -0.3 1,882,268 + -0.5 1,882,302 + +1.5 1,882,302 + -1.6 1,882,302 + +1.7 1,882,308 + +1.4 1,882,310 - -0.1 1,882,310 - -0.1 1,882,310 - -1.5 1,882,310 - -0.3 1,882,310 - -1.9 1,882,323 - -0.2 1,882,331 + -0.3 1,882,339 + -1.5 1,882,348 + -0.4 1,882,357 - -0.1 1,882,461 - B158DRAFT_1787 0.16 -1.1 1,882,627 - B158DRAFT_1787 0.37 -0.4 1,882,656 + B158DRAFT_1787 0.41 +0.1 1,882,718 + B158DRAFT_1787 0.49 +1.0 1,882,754 + B158DRAFT_1787 0.54 -0.4 1,882,754 + B158DRAFT_1787 0.54 -1.9 1,882,754 + B158DRAFT_1787 0.54 -3.1 1,882,762 - B158DRAFT_1787 0.55 -1.3 1,882,762 - B158DRAFT_1787 0.55 -1.1 1,882,793 + B158DRAFT_1787 0.59 -1.0
Or see this region's nucleotide sequence