Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1616 and B158DRAFT_1617 are separated by 16 nucleotides B158DRAFT_1617 and B158DRAFT_1618 are separated by 256 nucleotides
B158DRAFT_1616: B158DRAFT_1616 - copper-(or silver)-translocating P-type ATPase, at 1,675,449 to 1,677,701
_1616
B158DRAFT_1617: B158DRAFT_1617 - hypothetical protein, at 1,677,718 to 1,678,080
_1617
B158DRAFT_1618: B158DRAFT_1618 - sodium/proton antiporter, NhaD family (TC 2.A.62), at 1,678,337 to 1,679,740
_1618
Position (kb)
1677
1678
1679 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1676.880 kb on + strand, within B158DRAFT_1616 at 1677.085 kb on - strand, within B158DRAFT_1616 at 1677.248 kb on - strand, within B158DRAFT_1616 at 1677.279 kb on - strand, within B158DRAFT_1616 at 1677.339 kb on + strand, within B158DRAFT_1616 at 1677.340 kb on - strand, within B158DRAFT_1616 at 1677.383 kb on + strand, within B158DRAFT_1616 at 1677.446 kb on - strand, within B158DRAFT_1616 at 1677.446 kb on - strand, within B158DRAFT_1616 at 1677.457 kb on + strand, within B158DRAFT_1616 at 1677.457 kb on + strand, within B158DRAFT_1616 at 1677.465 kb on - strand, within B158DRAFT_1616 at 1677.470 kb on - strand, within B158DRAFT_1616 at 1677.477 kb on - strand at 1677.490 kb on + strand at 1677.517 kb on + strand at 1677.519 kb on - strand at 1677.573 kb on + strand at 1677.581 kb on - strand at 1677.581 kb on - strand at 1677.581 kb on - strand at 1677.581 kb on - strand at 1677.602 kb on + strand at 1677.605 kb on - strand at 1677.648 kb on - strand at 1677.651 kb on + strand at 1677.651 kb on + strand at 1677.651 kb on + strand at 1677.656 kb on + strand at 1677.659 kb on - strand at 1677.695 kb on + strand at 1677.703 kb on - strand at 1677.746 kb on + strand at 1677.746 kb on + strand at 1677.754 kb on - strand at 1677.754 kb on - strand at 1677.754 kb on - strand at 1677.754 kb on - strand at 1677.802 kb on - strand, within B158DRAFT_1617 at 1677.814 kb on + strand, within B158DRAFT_1617 at 1677.814 kb on + strand, within B158DRAFT_1617 at 1677.856 kb on - strand, within B158DRAFT_1617 at 1677.870 kb on - strand, within B158DRAFT_1617 at 1677.870 kb on - strand, within B158DRAFT_1617 at 1678.053 kb on + strand at 1678.053 kb on + strand at 1678.114 kb on + strand at 1678.120 kb on + strand at 1678.127 kb on + strand at 1678.128 kb on - strand at 1678.128 kb on - strand at 1678.154 kb on + strand at 1678.201 kb on + strand at 1678.209 kb on - strand at 1678.221 kb on - strand at 1678.277 kb on + strand at 1678.285 kb on - strand at 1678.293 kb on + strand at 1678.322 kb on + strand at 1678.480 kb on - strand, within B158DRAFT_1618 at 1678.516 kb on + strand, within B158DRAFT_1618 at 1678.547 kb on + strand, within B158DRAFT_1618 at 1678.547 kb on + strand, within B158DRAFT_1618 at 1678.555 kb on - strand, within B158DRAFT_1618 at 1678.555 kb on - strand, within B158DRAFT_1618 at 1678.555 kb on - strand, within B158DRAFT_1618 at 1678.674 kb on + strand, within B158DRAFT_1618 at 1678.713 kb on - strand, within B158DRAFT_1618 at 1678.739 kb on + strand, within B158DRAFT_1618 at 1678.754 kb on + strand, within B158DRAFT_1618 at 1678.767 kb on - strand, within B158DRAFT_1618 at 1678.767 kb on - strand, within B158DRAFT_1618 at 1678.770 kb on + strand, within B158DRAFT_1618 at 1678.808 kb on + strand, within B158DRAFT_1618 at 1678.808 kb on + strand, within B158DRAFT_1618 at 1678.808 kb on + strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.816 kb on - strand, within B158DRAFT_1618 at 1678.818 kb on - strand, within B158DRAFT_1618 at 1678.818 kb on - strand, within B158DRAFT_1618 at 1678.820 kb on + strand, within B158DRAFT_1618 at 1678.877 kb on + strand, within B158DRAFT_1618 at 1678.885 kb on - strand, within B158DRAFT_1618 at 1678.885 kb on - strand, within B158DRAFT_1618 at 1678.895 kb on - strand, within B158DRAFT_1618 at 1679.002 kb on + strand, within B158DRAFT_1618 at 1679.071 kb on + strand, within B158DRAFT_1618 at 1679.079 kb on + strand, within B158DRAFT_1618
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,676,880 + B158DRAFT_1616 0.64 -0.8 1,677,085 - B158DRAFT_1616 0.73 -1.3 1,677,248 - B158DRAFT_1616 0.80 -1.2 1,677,279 - B158DRAFT_1616 0.81 -1.0 1,677,339 + B158DRAFT_1616 0.84 +2.2 1,677,340 - B158DRAFT_1616 0.84 -0.3 1,677,383 + B158DRAFT_1616 0.86 -0.1 1,677,446 - B158DRAFT_1616 0.89 -1.8 1,677,446 - B158DRAFT_1616 0.89 +0.7 1,677,457 + B158DRAFT_1616 0.89 -0.8 1,677,457 + B158DRAFT_1616 0.89 -0.2 1,677,465 - B158DRAFT_1616 0.89 +0.4 1,677,470 - B158DRAFT_1616 0.90 -1.0 1,677,477 - -1.1 1,677,490 + -0.9 1,677,517 + -0.8 1,677,519 - -0.8 1,677,573 + -0.7 1,677,581 - -0.9 1,677,581 - +0.6 1,677,581 - +0.4 1,677,581 - -0.3 1,677,602 + -0.6 1,677,605 - -1.9 1,677,648 - +0.3 1,677,651 + -0.8 1,677,651 + -0.7 1,677,651 + +1.8 1,677,656 + -1.2 1,677,659 - +1.3 1,677,695 + -0.4 1,677,703 - +0.2 1,677,746 + -0.4 1,677,746 + -1.7 1,677,754 - +1.3 1,677,754 - -0.7 1,677,754 - +0.7 1,677,754 - -0.5 1,677,802 - B158DRAFT_1617 0.23 -0.4 1,677,814 + B158DRAFT_1617 0.26 +0.3 1,677,814 + B158DRAFT_1617 0.26 +0.3 1,677,856 - B158DRAFT_1617 0.38 -0.7 1,677,870 - B158DRAFT_1617 0.42 -0.1 1,677,870 - B158DRAFT_1617 0.42 -1.4 1,678,053 + +0.5 1,678,053 + +0.1 1,678,114 + -1.0 1,678,120 + -0.4 1,678,127 + -1.7 1,678,128 - -0.1 1,678,128 - -1.1 1,678,154 + -0.9 1,678,201 + -0.5 1,678,209 - -0.1 1,678,221 - -1.6 1,678,277 + +0.6 1,678,285 - +0.5 1,678,293 + -0.7 1,678,322 + -2.4 1,678,480 - B158DRAFT_1618 0.10 +1.0 1,678,516 + B158DRAFT_1618 0.13 -0.5 1,678,547 + B158DRAFT_1618 0.15 +0.1 1,678,547 + B158DRAFT_1618 0.15 -1.1 1,678,555 - B158DRAFT_1618 0.16 -0.7 1,678,555 - B158DRAFT_1618 0.16 -0.5 1,678,555 - B158DRAFT_1618 0.16 +0.9 1,678,674 + B158DRAFT_1618 0.24 -1.6 1,678,713 - B158DRAFT_1618 0.27 -0.5 1,678,739 + B158DRAFT_1618 0.29 +1.0 1,678,754 + B158DRAFT_1618 0.30 +0.2 1,678,767 - B158DRAFT_1618 0.31 -1.5 1,678,767 - B158DRAFT_1618 0.31 -0.1 1,678,770 + B158DRAFT_1618 0.31 -0.9 1,678,808 + B158DRAFT_1618 0.34 +0.8 1,678,808 + B158DRAFT_1618 0.34 -0.0 1,678,808 + B158DRAFT_1618 0.34 -0.4 1,678,816 - B158DRAFT_1618 0.34 +0.8 1,678,816 - B158DRAFT_1618 0.34 +0.3 1,678,816 - B158DRAFT_1618 0.34 -0.2 1,678,816 - B158DRAFT_1618 0.34 +0.7 1,678,818 - B158DRAFT_1618 0.34 -0.8 1,678,818 - B158DRAFT_1618 0.34 -0.7 1,678,820 + B158DRAFT_1618 0.34 +1.1 1,678,877 + B158DRAFT_1618 0.38 -0.6 1,678,885 - B158DRAFT_1618 0.39 +0.1 1,678,885 - B158DRAFT_1618 0.39 -1.9 1,678,895 - B158DRAFT_1618 0.40 -0.3 1,679,002 + B158DRAFT_1618 0.47 -0.8 1,679,071 + B158DRAFT_1618 0.52 +2.1 1,679,079 + B158DRAFT_1618 0.53 -0.6
Or see this region's nucleotide sequence