Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1609 and B158DRAFT_1610 are separated by 20 nucleotides B158DRAFT_1610 and B158DRAFT_1611 are separated by 29 nucleotides B158DRAFT_1611 and B158DRAFT_1612 are separated by 106 nucleotides B158DRAFT_1612 and B158DRAFT_1613 are separated by 91 nucleotides
B158DRAFT_1609: B158DRAFT_1609 - putative thymidine phosphorylase, at 1,670,376 to 1,671,890
_1609
B158DRAFT_1610: B158DRAFT_1610 - Metal-dependent hydrolase, at 1,671,911 to 1,672,657
_1610
B158DRAFT_1611: B158DRAFT_1611 - hypothetical protein, at 1,672,687 to 1,672,977
_1611
B158DRAFT_1612: B158DRAFT_1612 - hypothetical protein, at 1,673,084 to 1,673,251
_1612
B158DRAFT_1613: B158DRAFT_1613 - arsenical-resistance protein, at 1,673,343 to 1,674,362
_1613
Position (kb)
1671
1672
1673 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1670.955 kb on - strand, within B158DRAFT_1609 at 1670.960 kb on + strand, within B158DRAFT_1609 at 1670.962 kb on + strand, within B158DRAFT_1609 at 1670.975 kb on - strand, within B158DRAFT_1609 at 1670.975 kb on - strand, within B158DRAFT_1609 at 1670.977 kb on + strand, within B158DRAFT_1609 at 1670.977 kb on - strand, within B158DRAFT_1609 at 1670.986 kb on + strand, within B158DRAFT_1609 at 1671.071 kb on - strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.117 kb on + strand, within B158DRAFT_1609 at 1671.125 kb on - strand, within B158DRAFT_1609 at 1671.125 kb on - strand, within B158DRAFT_1609 at 1671.143 kb on + strand, within B158DRAFT_1609 at 1671.310 kb on - strand, within B158DRAFT_1609 at 1671.369 kb on - strand, within B158DRAFT_1609 at 1671.494 kb on + strand, within B158DRAFT_1609 at 1671.495 kb on + strand, within B158DRAFT_1609 at 1671.495 kb on + strand, within B158DRAFT_1609 at 1671.502 kb on - strand, within B158DRAFT_1609 at 1671.503 kb on - strand, within B158DRAFT_1609 at 1671.503 kb on - strand, within B158DRAFT_1609 at 1671.613 kb on + strand, within B158DRAFT_1609 at 1671.695 kb on + strand, within B158DRAFT_1609 at 1671.761 kb on + strand at 1671.994 kb on - strand, within B158DRAFT_1610 at 1672.058 kb on + strand, within B158DRAFT_1610 at 1672.058 kb on - strand, within B158DRAFT_1610 at 1672.101 kb on + strand, within B158DRAFT_1610 at 1672.109 kb on - strand, within B158DRAFT_1610 at 1672.111 kb on - strand, within B158DRAFT_1610 at 1672.124 kb on - strand, within B158DRAFT_1610 at 1672.124 kb on - strand, within B158DRAFT_1610 at 1672.312 kb on - strand, within B158DRAFT_1610 at 1672.331 kb on - strand, within B158DRAFT_1610 at 1672.426 kb on - strand, within B158DRAFT_1610 at 1672.453 kb on + strand, within B158DRAFT_1610 at 1672.498 kb on + strand, within B158DRAFT_1610 at 1672.545 kb on + strand, within B158DRAFT_1610 at 1672.553 kb on - strand, within B158DRAFT_1610 at 1672.558 kb on + strand, within B158DRAFT_1610 at 1672.601 kb on - strand at 1672.620 kb on - strand at 1672.630 kb on + strand at 1672.653 kb on - strand at 1672.666 kb on + strand at 1672.706 kb on - strand at 1672.727 kb on - strand, within B158DRAFT_1611 at 1672.814 kb on + strand, within B158DRAFT_1611 at 1672.814 kb on + strand, within B158DRAFT_1611 at 1672.820 kb on + strand, within B158DRAFT_1611 at 1672.826 kb on + strand, within B158DRAFT_1611 at 1672.827 kb on + strand, within B158DRAFT_1611 at 1672.922 kb on + strand, within B158DRAFT_1611 at 1672.922 kb on + strand, within B158DRAFT_1611 at 1672.922 kb on + strand, within B158DRAFT_1611 at 1672.922 kb on + strand, within B158DRAFT_1611 at 1672.922 kb on + strand, within B158DRAFT_1611 at 1672.930 kb on - strand, within B158DRAFT_1611 at 1672.930 kb on - strand, within B158DRAFT_1611 at 1672.930 kb on - strand, within B158DRAFT_1611 at 1672.930 kb on - strand, within B158DRAFT_1611 at 1672.930 kb on - strand, within B158DRAFT_1611 at 1672.988 kb on + strand at 1672.988 kb on + strand at 1672.988 kb on + strand at 1672.996 kb on - strand at 1673.002 kb on + strand at 1673.002 kb on + strand at 1673.002 kb on + strand at 1673.002 kb on + strand at 1673.002 kb on + strand at 1673.010 kb on + strand at 1673.010 kb on - strand at 1673.010 kb on - strand at 1673.010 kb on - strand at 1673.010 kb on - strand at 1673.010 kb on - strand at 1673.010 kb on - strand at 1673.010 kb on - strand at 1673.010 kb on - strand at 1673.018 kb on - strand at 1673.018 kb on - strand at 1673.118 kb on + strand, within B158DRAFT_1612 at 1673.187 kb on + strand, within B158DRAFT_1612 at 1673.187 kb on + strand, within B158DRAFT_1612 at 1673.289 kb on + strand at 1673.289 kb on + strand at 1673.294 kb on + strand at 1673.294 kb on + strand at 1673.313 kb on - strand at 1673.348 kb on + strand at 1673.404 kb on + strand at 1673.443 kb on + strand at 1673.443 kb on + strand at 1673.443 kb on + strand at 1673.443 kb on + strand at 1673.443 kb on + strand at 1673.443 kb on + strand at 1673.443 kb on + strand at 1673.451 kb on - strand, within B158DRAFT_1613 at 1673.451 kb on - strand, within B158DRAFT_1613 at 1673.451 kb on - strand, within B158DRAFT_1613 at 1673.451 kb on - strand, within B158DRAFT_1613 at 1673.451 kb on - strand, within B158DRAFT_1613 at 1673.460 kb on - strand, within B158DRAFT_1613 at 1673.570 kb on - strand, within B158DRAFT_1613
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,670,955 - B158DRAFT_1609 0.38 +0.0 1,670,960 + B158DRAFT_1609 0.39 +1.3 1,670,962 + B158DRAFT_1609 0.39 -2.1 1,670,975 - B158DRAFT_1609 0.40 -0.7 1,670,975 - B158DRAFT_1609 0.40 -1.9 1,670,977 + B158DRAFT_1609 0.40 -2.1 1,670,977 - B158DRAFT_1609 0.40 +0.2 1,670,986 + B158DRAFT_1609 0.40 +0.8 1,671,071 - B158DRAFT_1609 0.46 +0.4 1,671,117 + B158DRAFT_1609 0.49 -0.0 1,671,117 + B158DRAFT_1609 0.49 -1.4 1,671,117 + B158DRAFT_1609 0.49 +0.8 1,671,117 + B158DRAFT_1609 0.49 -1.3 1,671,117 + B158DRAFT_1609 0.49 -2.2 1,671,125 - B158DRAFT_1609 0.49 -0.7 1,671,125 - B158DRAFT_1609 0.49 +1.0 1,671,143 + B158DRAFT_1609 0.51 -1.1 1,671,310 - B158DRAFT_1609 0.62 -0.8 1,671,369 - B158DRAFT_1609 0.66 +0.2 1,671,494 + B158DRAFT_1609 0.74 -2.1 1,671,495 + B158DRAFT_1609 0.74 -0.1 1,671,495 + B158DRAFT_1609 0.74 +0.1 1,671,502 - B158DRAFT_1609 0.74 -0.3 1,671,503 - B158DRAFT_1609 0.74 +0.3 1,671,503 - B158DRAFT_1609 0.74 +0.7 1,671,613 + B158DRAFT_1609 0.82 +0.9 1,671,695 + B158DRAFT_1609 0.87 -2.0 1,671,761 + -0.2 1,671,994 - B158DRAFT_1610 0.11 +2.0 1,672,058 + B158DRAFT_1610 0.20 -0.6 1,672,058 - B158DRAFT_1610 0.20 -0.8 1,672,101 + B158DRAFT_1610 0.25 -0.7 1,672,109 - B158DRAFT_1610 0.27 -1.1 1,672,111 - B158DRAFT_1610 0.27 +0.3 1,672,124 - B158DRAFT_1610 0.29 -1.4 1,672,124 - B158DRAFT_1610 0.29 -0.2 1,672,312 - B158DRAFT_1610 0.54 -0.4 1,672,331 - B158DRAFT_1610 0.56 -0.4 1,672,426 - B158DRAFT_1610 0.69 -0.9 1,672,453 + B158DRAFT_1610 0.73 -0.2 1,672,498 + B158DRAFT_1610 0.79 -1.0 1,672,545 + B158DRAFT_1610 0.85 +0.3 1,672,553 - B158DRAFT_1610 0.86 -0.8 1,672,558 + B158DRAFT_1610 0.87 -0.7 1,672,601 - +0.3 1,672,620 - -0.2 1,672,630 + -1.0 1,672,653 - -0.5 1,672,666 + +0.5 1,672,706 - +0.4 1,672,727 - B158DRAFT_1611 0.14 -1.4 1,672,814 + B158DRAFT_1611 0.44 -0.2 1,672,814 + B158DRAFT_1611 0.44 +1.3 1,672,820 + B158DRAFT_1611 0.46 +1.4 1,672,826 + B158DRAFT_1611 0.48 -0.4 1,672,827 + B158DRAFT_1611 0.48 -0.9 1,672,922 + B158DRAFT_1611 0.81 -0.1 1,672,922 + B158DRAFT_1611 0.81 -0.5 1,672,922 + B158DRAFT_1611 0.81 -0.1 1,672,922 + B158DRAFT_1611 0.81 -1.5 1,672,922 + B158DRAFT_1611 0.81 -0.8 1,672,930 - B158DRAFT_1611 0.84 -1.0 1,672,930 - B158DRAFT_1611 0.84 +1.6 1,672,930 - B158DRAFT_1611 0.84 +0.3 1,672,930 - B158DRAFT_1611 0.84 +0.3 1,672,930 - B158DRAFT_1611 0.84 -1.7 1,672,988 + -0.9 1,672,988 + +0.5 1,672,988 + -1.7 1,672,996 - +2.2 1,673,002 + -1.3 1,673,002 + -0.4 1,673,002 + -1.1 1,673,002 + -1.1 1,673,002 + -0.3 1,673,010 + +1.4 1,673,010 - -0.4 1,673,010 - -0.3 1,673,010 - -1.3 1,673,010 - -0.8 1,673,010 - +0.3 1,673,010 - -0.3 1,673,010 - -1.0 1,673,010 - -0.4 1,673,018 - -0.5 1,673,018 - -0.3 1,673,118 + B158DRAFT_1612 0.20 +0.9 1,673,187 + B158DRAFT_1612 0.61 -0.1 1,673,187 + B158DRAFT_1612 0.61 +1.6 1,673,289 + -1.3 1,673,289 + -1.4 1,673,294 + +1.5 1,673,294 + -0.8 1,673,313 - -1.0 1,673,348 + -1.5 1,673,404 + +0.4 1,673,443 + -0.6 1,673,443 + -1.4 1,673,443 + -0.7 1,673,443 + -0.0 1,673,443 + -1.1 1,673,443 + -1.5 1,673,443 + -0.8 1,673,451 - B158DRAFT_1613 0.11 -0.0 1,673,451 - B158DRAFT_1613 0.11 -0.0 1,673,451 - B158DRAFT_1613 0.11 -2.1 1,673,451 - B158DRAFT_1613 0.11 +2.4 1,673,451 - B158DRAFT_1613 0.11 +0.0 1,673,460 - B158DRAFT_1613 0.11 -0.7 1,673,570 - B158DRAFT_1613 0.22 +0.2
Or see this region's nucleotide sequence